isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	perc_A_downstream_TTS	NEG_MLprob	POS_MLprob	ML_classifier	intra-priming	SQANTI_filter
SAMPLE_1_MOLECULE_7422_CONTIG_1	4	-	1547	10	full-splice_match	FGG	ENST00000404648	1760	10	196	17	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6471_CONTIG_1	7	+	1925	14	full-splice_match	CCT6A	ENST00000275603	2719	14	117	677	multi-exon	FALSE	canonical	0	0	1625	2	NA	0	0	FALSE	NA	NA	0	C	coding	488	1464	232	1695	15	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3825_CONTIG_1	2	+	1403	6	full-splice_match	HNMT	ENST00000280097	3291	6	170	1718	multi-exon	FALSE	canonical	0	0	535	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7659_CONTIG_1	4	+	1535	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	504	224	internal_fragment	FALSE	canonical	0	0	1438	2	NA	1	0	FALSE	NA	NA	0	C	coding	463	1389	24	1412	35	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6997_CONTIG_1	12	-	740	7	full-splice_match	TMBIM4	ENST00000358230	2952	7	94	2118	multi-exon	FALSE	canonical	0	0	124	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1201_CONTIG_1	1	-	475	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	3	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7426_CONTIG_1	11	-	1414	10	full-splice_match	EEF1G	ENST00000329251	1523	10	107	2	multi-exon	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	25	1335	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_763_CONTIG_1	8	+	1514	7	full-splice_match	CA2	ENST00000285379	1717	7	155	48	multi-exon	FALSE	canonical	0	0	738	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4914_CONTIG_1	19	-	2262	12	incomplete-splice_match	EEF2	ENST00000309311	3164	15	670	232	5prime_fragment	FALSE	canonical	0	0	31	2	NA	2	0	FALSE	NA	NA	0	B	coding	659	1977	17	1993	20	0.574	0.426	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3355_CONTIG_1	11	-	1579	10	full-splice_match	HPX	ENST00000265983	1652	10	77	-4	multi-exon	FALSE	canonical	0	0	107	2	NA	2	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	25	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_656_CONTIG_1	10	-	909	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	168	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6475_CONTIG_1	4	+	1910	15	full-splice_match	ALB	ENST00000295897	2263	15	50	303	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_740_CONTIG_1	12	+	1231	7	full-splice_match	TPI1	ENST00000396705	1231	7	0	0	multi-exon	FALSE	canonical	0	0	667	2	NA	1	0	FALSE	NA	NA	0	A	coding	249	747	37	783	0	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7804_CONTIG_1	4	-	1491	10	full-splice_match	FGG	ENST00000404648	1760	10	193	76	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7289_CONTIG_1	4	-	1563	10	full-splice_match	FGG	ENST00000404648	1760	10	193	4	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3018_CONTIG_1	4	+	1526	13	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1385	2	NA	0	0	TRUE	NA	NA	0	C	coding	440	1320	40	1359	65	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2494_CONTIG_1	4	+	471	3	full-splice_match	FGB	ENST00000497097	574	3	5	98	multi-exon	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	C	coding	156	468	3	470	55	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_563_CONTIG_1	1	-	1044	3	incomplete-splice_match	TAGLN2	ENST00000368096	1603	5	502	57	5prime_fragment	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	61	405	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3691_CONTIG_1	5	-	1994	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	62	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.39	0.61	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2231_CONTIG_1	10	-	1342	7	incomplete-splice_match	CYP2C8	ENST00000525991	1587	8	373	-128	5prime_fragment	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.232	0.768	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4418_CONTIG_1	1	-	1503	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	51	40	multi-exon	FALSE	canonical	0	0	109	2	NA	2	0	FALSE	NA	NA	0	C	coding	464	1392	69	1460	65	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5520_CONTIG_1	4	+	949	8	incomplete-splice_match	ALB	ENST00000511370	1519	11	97	473	internal_fragment	FALSE	canonical	0	0	864	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	400	948	25	0.304	0.696	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4301_CONTIG_1	2	-	955	6	novel_in_catalog	IFT172	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	140	2	NA	1	0	FALSE	NA	NA	0	A	coding	123	369	102	470	50	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3052_CONTIG_1	4	-	801	4	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	980	-114	5prime_fragment	FALSE	canonical	0	0	40	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7241_CONTIG_1	11	+	1714	9	novel_not_in_catalog	OTUB1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1695	2	NA	0	0	TRUE	NA	NA	0	A	coding	271	813	12	824	35	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5357_CONTIG_1	4	+	1381	11	full-splice_match	ALB	ENST00000511370	1519	11	71	67	multi-exon	FALSE	canonical	0	0	1315	2	NA	2	0	FALSE	NA	NA	0	C	coding	288	864	426	1289	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1698_CONTIG_1	18	+	617	4	full-splice_match	TTR	ENST00000237014	957	4	150	190	multi-exon	FALSE	canonical	0	0	363	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	28	468	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5784_CONTIG_1	16	-	404	3	full-splice_match	MT1G	ENST00000379811	405	3	0	1	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	49	147	150	296	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2925_CONTIG_1	19	+	863	4	full-splice_match	FTL	ENST00000331825	878	4	8	7	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8213_CONTIG_1	14	-	1371	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	33	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	5	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4699_CONTIG_1	6	+	1604	3	incomplete-splice_match	AIG1	ENST00000344492	1229	5	283	-658	internal_fragment	FALSE	canonical	0	0	280	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8513_CONTIG_1	4	+	1903	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	189	171	internal_fragment	FALSE	canonical	0	0	1753	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	231	1727	50	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2587_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2951_CONTIG_1	7	-	1153	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	28	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2034_CONTIG_1	21	+	890	5	full-splice_match	SOD1	ENST00000270142	966	5	71	5	multi-exon	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	78	539	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3794_CONTIG_1	5	-	2038	5	full-splice_match	SEPP1	ENST00000514985	2243	5	186	19	multi-exon	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.28	0.72	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6657_CONTIG_1	19	+	404	4	full-splice_match	APOC1	ENST00000252491	461	4	44	13	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1268_CONTIG_1	8	-	1114	10	full-splice_match	CTSB	ENST00000353047	3875	10	142	2619	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	334	1002	113	1114	40	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_782_CONTIG_1	19	-	1316	13	incomplete-splice_match	C3	ENST00000245907	5263	41	3751	196	5prime_fragment	FALSE	canonical	0	0	152	2	NA	0	0	FALSE	NA	NA	0	B	coding	385	1155	162	1316	15	0.656	0.344	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_32_CONTIG_1	10	-	910	10	full-splice_match	NUDT5	ENST00000491614	3433	10	271	2252	multi-exon	TRUE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	coding	219	657	126	782	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7652_CONTIG_1	17	-	1548	8	full-splice_match	VTN	ENST00000226218	2149	8	515	86	multi-exon	FALSE	canonical	0	0	168	2	NA	1	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	15	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1596_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	23	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2825_CONTIG_1	11	-	857	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	42	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7937_CONTIG_1	17	-	282	3	incomplete-splice_match	VTN	ENST00000536498	2046	10	587	1177	internal_fragment	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1891_CONTIG_1	1	+	623	2	genic_intron	novelGene_128	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	530	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7201_CONTIG_1	11	-	467	5	full-splice_match	RPS25	ENST00000527673	835	5	347	21	multi-exon	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	60	434	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4719_CONTIG_1	11	+	868	5	incomplete-splice_match	VPS51	ENST00000527646	2144	9	1275	1	internal_fragment	FALSE	canonical	0	0	488	2	NA	0	0	FALSE	NA	NA	0	A	coding	193	579	168	746	0	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1605_CONTIG_1	10	-	309	2	incomplete-splice_match	NRP1	ENST00000374821	1988	11	-62	1741	internal_fragment	FALSE	canonical	0	0	275	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.462	0.538	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6517_CONTIG_1	6	+	1229	9	novel_not_in_catalog	PLG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1201	2	NA	0	0	TRUE	NA	NA	0	C	coding	207	621	354	974	40	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6631_CONTIG_1	22	-	1111	3	full-splice_match	C22orf39	ENST00000333059	1221	3	-3	113	multi-exon	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	A	coding	105	315	13	327	30	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2628_CONTIG_1	4	-	638	5	incomplete-splice_match	ADH1A	ENST00000209668	1499	9	32	829	internal_fragment	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	185	555	83	637	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1417_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	56	337	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7300_CONTIG_1	3	+	2016	15	incomplete-splice_match	ITIH1	ENST00000537050	2486	18	448	22	internal_fragment	FALSE	canonical	0	0	1758	2	NA	0	0	FALSE	NA	NA	0	C	coding	623	1869	17	1885	30	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2451_CONTIG_1	17	+	1397	2	novel_not_in_catalog	TAOK1	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	canonical	0	0	280	2	NA	2	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4223_CONTIG_1	2	-	403	3	incomplete-splice_match	FN1	ENST00000494446	676	4	267	6	5prime_fragment	FALSE	canonical	0	0	12	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	10	0.422	0.578	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1223_CONTIG_1	4	+	1663	12	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	263	3prime_fragment	FALSE	canonical	0	0	1467	2	NA	2	0	FALSE	NA	NA	0	C	coding	541	1623	40	1662	55	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7648_CONTIG_1	15	+	883	6	full-splice_match	MRPS11	ENST00000325844	1862	6	249	730	multi-exon	FALSE	canonical	0	0	493	2	NA	0	0	FALSE	NA	NA	0	A	coding	194	582	17	598	25	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5979_CONTIG_1	4	-	1672	13	full-splice_match	GC	ENST00000273951	1972	13	286	14	multi-exon	FALSE	canonical	0	0	116	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	50	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2192_CONTIG_1	1	-	1153	3	novel_not_in_catalog	CRP	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	165	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1870_CONTIG_1	4	+	2033	15	full-splice_match	ALB	ENST00000295897	2263	15	50	180	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_788_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7205_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3953_CONTIG_1	11	+	306	3	incomplete-splice_match	FKBP2	ENST00000536642	637	4	58	273	3prime_fragment	FALSE	canonical	0	0	247	2	NA	0	0	FALSE	NA	NA	0	A	coding	76	228	77	304	10	0.244	0.756	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8425_CONTIG_1	11	-	1573	10	full-splice_match	HPX	ENST00000265983	1652	10	72	7	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	30	1415	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8709_CONTIG_1	1	-	1019	6	novel_not_in_catalog	SELENBP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	68	2	NA	2	0	FALSE	NA	NA	0	C	coding	170	510	508	1017	25	0.542	0.458	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1626_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-15	446	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	50	1018	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1510_CONTIG_1	1	-	1065	3	genic	TOR1AIP2	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	46	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5842_CONTIG_1	14	+	1423	5	full-splice_match	SERPINA3	ENST00000393080	1581	5	7	151	multi-exon	FALSE	canonical	0	0	1129	2	NA	0	0	FALSE	NA	NA	0	C	coding	420	1260	71	1330	15	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2290_CONTIG_1	19	+	1092	3	full-splice_match	APOE	ENST00000425718	923	3	255	-424	multi-exon	FALSE	canonical	0	0	246	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	11	961	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4648_CONTIG_1	11	-	887	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	12	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2045_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	50	161	multi-exon	FALSE	canonical	0	0	1892	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8469_CONTIG_1	9	-	1278	10	full-splice_match	STOML2	ENST00000356493	1278	10	-18	18	multi-exon	FALSE	canonical	0	0	126	2	NA	0	0	FALSE	NA	NA	0	C	coding	356	1068	82	1149	40	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3047_CONTIG_1	9	+	881	8	full-splice_match	RPL7A	ENST00000323345	891	8	8	2	multi-exon	FALSE	canonical	0	0	718	2	NA	0	0	FALSE	NA	NA	0	A	coding	266	798	23	820	20	0.276	0.724	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6698_CONTIG_1	19	+	482	4	full-splice_match	APOC2	ENST00000252490	717	4	65	170	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	39	341	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2048_CONTIG_1	4	+	2061	15	full-splice_match	ALB	ENST00000295897	2263	15	48	154	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7396_CONTIG_1	15	-	1406	10	full-splice_match	RPL4	ENST00000307961	2767	10	45	1316	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	49	1329	40	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4042_CONTIG_1	11	+	509	4	full-splice_match	SAA1	ENST00000356524	615	4	90	16	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7882_CONTIG_1	4	+	400	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	754	329	internal_fragment	FALSE	canonical	0	0	363	2	NA	0	0	FALSE	NA	NA	0	C	coding	94	282	119	400	55	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5293_CONTIG_1	9	+	764	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-4	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7450_CONTIG_1	4	+	2010	15	full-splice_match	ALB	ENST00000295897	2263	15	48	205	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6093_CONTIG_1	7	-	890	8	full-splice_match	PSMA2	ENST00000223321	1483	8	42	551	multi-exon	FALSE	canonical	0	0	64	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2907_CONTIG_1	4	+	1951	15	full-splice_match	ALB	ENST00000295897	2263	15	48	264	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4666_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6585_CONTIG_1	14	+	1268	2	full-splice_match	RNASE4	ENST00000555835	1907	2	562	77	multi-exon	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5414_CONTIG_1	1	-	1534	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	53	7	multi-exon	FALSE	canonical	0	0	107	2	NA	1	0	FALSE	NA	NA	0	C	coding	464	1392	67	1458	40	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_246_CONTIG_1	6	-	1659	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	88	multi-exon	FALSE	canonical	0	0	33	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7636_CONTIG_1	16	+	1115	3	full-splice_match	HP	ENST00000566821	3024	3	1900	9	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2438_CONTIG_1	3	-	1852	4	full-splice_match	CMTM6	ENST00000205636	3863	4	580	1431	multi-exon	FALSE	canonical	0	0	221	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4437_CONTIG_1	1	+	1074	5	incomplete-splice_match	C4BPA	ENST00000367070	2243	12	1166	3	internal_fragment	FALSE	canonical	0	0	648	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7890_CONTIG_1	15	-	1449	5	incomplete-splice_match	GATM	ENST00000396659	2597	9	1017	131	5prime_fragment	FALSE	canonical	0	0	136	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6153_CONTIG_1	1	+	814	2	full-splice_match	APCS	ENST00000255040	926	2	1	111	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2817_CONTIG_1	9	+	1455	15	full-splice_match	ASS1	ENST00000352480	1564	15	33	76	multi-exon	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	40	1275	20	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5937_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-14	442	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	49	1020	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4519_CONTIG_1	3	+	1093	7	full-splice_match	HRG	ENST00000232003	2015	7	166	756	multi-exon	FALSE	canonical	0	0	655	2	NA	0	0	FALSE	NA	NA	0	C	coding	72	216	878	1093	30	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_21_CONTIG_1	4	-	2159	5	full-splice_match	FGA	ENST00000403106	2248	5	22	67	multi-exon	FALSE	canonical	0	0	111	2	NA	1	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	40	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7747_CONTIG_1	12	-	689	5	incomplete-splice_match	HPD	ENST00000289004	1419	14	730	0	5prime_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	156	468	18	485	5	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2943_CONTIG_1	11	+	1717	13	full-splice_match	ILK	ENST00000420936	1692	13	12	-37	multi-exon	FALSE	canonical	0	0	1308	2	NA	0	0	FALSE	NA	NA	0	A	coding	452	1356	100	1455	15	0.244	0.756	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4002_CONTIG_1	5	+	1830	14	incomplete-splice_match	DDX46	ENST00000452510	5689	23	1480	2379	internal_fragment	FALSE	non_canonical	0	0	1729	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.692	0.308	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_128_CONTIG_1	10	+	361	2	incomplete-splice_match	CYP2E1	ENST00000541261	475	4	182	-68	internal_fragment	FALSE	canonical	0	0	210	2	NA	0	0	FALSE	NA	NA	0	C	coding	109	327	34	360	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5349_CONTIG_1	GL000220.1	+	221	2	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	184	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1154_CONTIG_1	3	-	1624	4	full-splice_match	ABHD14B	ENST00000361143	1636	4	35	-23	multi-exon	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	A	coding	210	630	96	725	35	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7635_CONTIG_1	17	+	2069	13	full-splice_match	GRN	ENST00000053867	2148	13	9	70	multi-exon	FALSE	canonical	0	0	1697	2	NA	0	0	FALSE	NA	NA	0	A	coding	593	1779	54	1832	15	0.478	0.522	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7536_CONTIG_1	12	-	1877	10	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	55	2	NA	1	0	TRUE	NA	NA	0	C	coding	592	1776	54	1829	75	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3056_CONTIG_1	16	-	391	3	full-splice_match	MT1G	ENST00000444837	406	3	0	15	multi-exon	FALSE	canonical	0	0	100	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3818_CONTIG_1	2	+	431	5	full-splice_match	RPL31	ENST00000264258	1865	5	579	855	multi-exon	FALSE	canonical	0	0	368	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	23	397	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6694_CONTIG_1	4	-	1678	13	full-splice_match	GC	ENST00000273951	1972	13	286	8	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6335_CONTIG_1	4	+	1992	15	full-splice_match	ALB	ENST00000295897	2263	15	48	223	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4098_CONTIG_1	14	-	1371	7	incomplete-splice_match	TRIP11	ENST00000267622	9996	21	0	8625	internal_fragment	FALSE	canonical	0	0	513	2	NA	1	0	FALSE	NA	NA	0	A	coding	332	996	375	1370	50	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4705_CONTIG_1	12	-	1272	10	novel_not_in_catalog	MLF2	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	153	2	NA	0	0	TRUE	NA	NA	0	C	coding	248	744	182	925	35	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3513_CONTIG_1	6	+	1649	4	full-splice_match	TUBB	ENST00000327892	2670	4	156	865	multi-exon	FALSE	canonical	0	0	427	2	NA	2	0	FALSE	NA	NA	0	C	coding	444	1332	151	1482	25	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7169_CONTIG_1	2	-	1089	4	full-splice_match	ADI1	ENST00000327435	2391	4	207	1095	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	43	579	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7595_CONTIG_1	1	-	1327	2	genic_intron	novelGene_731	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	21	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1744_CONTIG_1	7	-	920	3	incomplete-splice_match	AZGP1	ENST00000292401	1307	4	390	-3	5prime_fragment	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	39	641	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2196_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	50	170	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_264_CONTIG_1	10	+	1310	8	incomplete-splice_match	CYP2E1	ENST00000252945	1667	9	330	27	internal_fragment	FALSE	canonical	0	0	1000	2	NA	0	0	FALSE	NA	NA	0	C	coding	356	1068	115	1182	55	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4006_CONTIG_1	4	+	1516	8	full-splice_match	FGB	ENST00000302068	1975	8	125	334	multi-exon	FALSE	canonical	0	0	1182	2	NA	0	0	FALSE	NA	NA	0	C	coding	344	1032	380	1411	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2330_CONTIG_1	9	-	1425	9	full-splice_match	ALDOB	ENST00000374855	2451	9	47	979	multi-exon	FALSE	canonical	0	0	68	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	79	1170	50	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1519_CONTIG_1	6	+	809	6	incomplete-splice_match	PLG	ENST00000308192	2741	19	1820	112	internal_fragment	FALSE	canonical	0	0	514	2	NA	0	0	FALSE	NA	NA	0	C	coding	207	621	53	673	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2838_CONTIG_1	4	+	1635	8	full-splice_match	FGB	ENST00000302068	1975	8	59	281	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8224_CONTIG_1	3	+	2283	17	full-splice_match	TF	ENST00000402696	2968	17	437	248	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	65	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6819_CONTIG_1	10	+	1631	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	36	multi-exon	FALSE	canonical	0	0	1330	2	NA	1	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5888_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	452	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4617_CONTIG_1	11	-	571	2	full-splice_match	IFITM3	ENST00000399808	808	2	230	7	multi-exon	FALSE	canonical	0	0	256	2	NA	0	0	FALSE	NA	NA	0	C	coding	133	399	8	406	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7824_CONTIG_1	3	+	1882	11	full-splice_match	EIF4A2	ENST00000440191	1889	11	0	7	multi-exon	FALSE	canonical	0	0	1116	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6713_CONTIG_1	9	-	1374	9	novel_not_in_catalog	ALDOB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	259	777	77	853	55	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1401_CONTIG_1	4	+	1174	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	284	25	internal_fragment	FALSE	canonical	0	0	1034	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	145	1008	65	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1627_CONTIG_1	20	+	1014	10	novel_not_in_catalog	SLC17A9	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	677	2	NA	0	0	FALSE	NA	NA	0	B	coding	123	369	470	838	10	0.708	0.292	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5272_CONTIG_1	2	-	1250	4	full-splice_match	ADI1	ENST00000327435	2391	4	211	930	multi-exon	FALSE	canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	39	575	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1814_CONTIG_1	12	-	1673	10	full-splice_match	ATP5B	ENST00000262030	1789	10	30	86	multi-exon	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	C	coding	417	1251	358	1608	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8652_CONTIG_1	17	-	1161	8	full-splice_match	APOH	ENST00000205948	1176	8	7	8	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7383_CONTIG_1	1	+	2244	2	novel_in_catalog	CFH	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1852	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.636	0.364	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4334_CONTIG_1	19	+	577	3	full-splice_match	APOC4	ENST00000592954	615	3	36	2	multi-exon	FALSE	canonical	0	0	222	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	5	385	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6629_CONTIG_1	1	-	1614	8	incomplete-splice_match	RP11-544M22.13	ENST00000289779	2096	13	469	13	5prime_fragment	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	B	coding	190	570	141	710	55	0.696	0.304	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5286_CONTIG_1	5	-	1866	10	incomplete-splice_match	C9	ENST00000263408	2713	11	173	674	5prime_fragment	FALSE	canonical	0	0	106	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.604	0.396	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7807_CONTIG_1	3	+	1044	9	novel_not_in_catalog	TF	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	946	2	NA	1	0	TRUE	NA	NA	0	C	coding	310	930	49	978	15	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8376_CONTIG_1	14	-	1006	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	456	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	47	1006	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3343_CONTIG_1	1	-	836	6	novel_not_in_catalog	FMO5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	75	2	NA	0	0	FALSE	NA	NA	0	B	coding	243	729	108	836	30	0.63	0.37	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3179_CONTIG_1	8	-	1149	7	full-splice_match	LACTB2	ENST00000276590	1508	7	-8	367	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2895_CONTIG_1	1	+	659	6	full-splice_match	RBM8A	ENST00000369307	796	6	6	131	multi-exon	FALSE	canonical	0	0	504	2	NA	0	0	FALSE	NA	NA	0	C	coding	173	519	29	547	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4413_CONTIG_1	4	+	2089	16	novel_not_in_catalog	HGFAC	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1864	2	NA	0	0	TRUE	NA	NA	0	B	coding	679	2037	8	2044	40	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8566_CONTIG_1	15	+	947	4	full-splice_match	B2M	ENST00000558401	1715	4	36	732	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2886_CONTIG_1	19	+	464	4	full-splice_match	COX6B1	ENST00000246554	667	4	120	83	multi-exon	FALSE	canonical	0	0	279	2	NA	0	0	FALSE	NA	NA	0	A	coding	86	258	73	330	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1747_CONTIG_1	4	+	292	3	incomplete-splice_match	RPS3A	ENST00000508783	587	4	195	100	internal_fragment	FALSE	canonical	0	0	258	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5607_CONTIG_1	8	-	894	6	full-splice_match	HRSP12	ENST00000254878	1057	6	75	88	multi-exon	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8640_CONTIG_1	6	+	1630	6	incomplete-splice_match	PLG	ENST00000308192	2741	19	1816	-705	internal_fragment	FALSE	canonical	0	0	518	2	NA	1	0	FALSE	NA	NA	0	C	coding	207	621	57	677	35	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7103_CONTIG_1	19	+	2282	18	incomplete-splice_match	SAFB	ENST00000592224	3014	21	589	143	internal_fragment	FALSE	canonical	0	0	2120	2	NA	0	0	FALSE	NA	NA	0	A	coding	463	1389	859	2247	25	0.294	0.706	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1503_CONTIG_1	4	+	1911	15	full-splice_match	ALB	ENST00000295897	2263	15	48	304	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4412_CONTIG_1	17	+	1430	6	full-splice_match	SLC9A3R1	ENST00000262613	1969	6	376	163	multi-exon	FALSE	canonical	0	0	707	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	288	893	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5549_CONTIG_1	14	+	1336	2	genic_intron	novelGene_676	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_633_CONTIG_1	20	+	1352	6	novel_not_in_catalog	GID8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1062	2	NA	0	0	TRUE	NA	NA	0	A	coding	228	684	99	782	35	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2712_CONTIG_1	4	-	1595	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	72	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	35	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7134_CONTIG_1	21	-	1167	7	full-splice_match	C21orf59	ENST00000290155	1692	7	494	31	multi-exon	FALSE	canonical	0	0	268	2	NA	0	0	FALSE	NA	NA	0	A	coding	290	870	130	999	50	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1006_CONTIG_1	8	+	607	4	full-splice_match	LY6E	ENST00000429120	1173	4	46	520	multi-exon	FALSE	canonical	0	0	282	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	111	503	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5232_CONTIG_1	10	+	1400	3	novel_not_in_catalog	CYP2C9	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	387	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6520_CONTIG_1	22	+	1303	9	full-splice_match	DRG1	ENST00000331457	1746	9	124	319	multi-exon	FALSE	canonical	0	0	1041	2	NA	1	0	FALSE	NA	NA	0	C	coding	367	1101	38	1138	25	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_537_CONTIG_1	5	-	2047	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	9	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_582_CONTIG_1	10	+	1833	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	27	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4142_CONTIG_1	16	+	310	2	novel_not_in_catalog	HSD3B7	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	180	2	NA	1	1	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1738_CONTIG_1	4	+	2007	15	full-splice_match	ALB	ENST00000295897	2263	15	50	206	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1034_CONTIG_1	5	-	1051	4	full-splice_match	TMEM167A	ENST00000502346	4630	4	122	3457	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4606_CONTIG_1	11	+	1511	7	novel_in_catalog	GLYATL1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	727	2	NA	0	0	FALSE	NA	NA	0	B	coding	325	975	168	1142	50	0.628	0.372	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_712_CONTIG_1	19	-	637	5	full-splice_match	BLVRB	ENST00000263368	873	5	98	138	multi-exon	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	C	coding	194	582	55	636	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4425_CONTIG_1	9	-	1804	8	full-splice_match	PLIN2	ENST00000276914	1972	8	89	79	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	92	1402	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5355_CONTIG_1	3	+	1058	2	full-splice_match	GOLGA4	ENST00000497537	332	2	255	-981	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4468_CONTIG_1	1	-	1931	8	novel_not_in_catalog	FMO5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	70	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6311_CONTIG_1	3	-	846	4	incomplete-splice_match	PLOD2	ENST00000494950	2908	20	1852	210	5prime_fragment	FALSE	canonical	0	0	91	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.418	0.582	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_14_CONTIG_1	4	+	377	4	incomplete-splice_match	ALB	ENST00000415165	1483	11	565	541	internal_fragment	FALSE	canonical	0	0	328	2	NA	0	0	FALSE	NA	NA	0	C	coding	23	69	308	376	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2374_CONTIG_1	6	+	1374	6	full-splice_match	AIG1	ENST00000357847	1395	6	10	11	multi-exon	FALSE	canonical	0	0	719	2	NA	1	0	FALSE	NA	NA	0	C	coding	238	714	41	754	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1629_CONTIG_1	3	-	1703	14	incomplete-splice_match	SFMBT1	ENST00000296295	3365	20	572	1090	internal_fragment	TRUE	canonical	0	0	161	2	NA	0	0	FALSE	NA	NA	0	A	coding	357	1071	632	1702	20	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7349_CONTIG_1	16	+	266	2	full-splice_match	MT2A	ENST00000563985	688	2	430	-8	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7115_CONTIG_1	8	-	1585	9	full-splice_match	CLU	ENST00000560366	2841	9	107	1149	multi-exon	FALSE	canonical	0	0	49	2	NA	1	0	FALSE	NA	NA	0	C	coding	448	1344	82	1425	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7106_CONTIG_1	10	-	914	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	163	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5236_CONTIG_1	4	+	2024	15	full-splice_match	ALB	ENST00000295897	2263	15	48	191	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7388_CONTIG_1	1	-	1465	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	82	47	multi-exon	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	38	1429	35	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7185_CONTIG_1	17	-	1614	8	full-splice_match	VTN	ENST00000226218	2149	8	515	20	multi-exon	FALSE	canonical	0	0	168	2	NA	1	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1253_CONTIG_1	10	-	928	4	incomplete-splice_match	CYP2C8	ENST00000371270	1923	9	991	4	5prime_fragment	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2169_CONTIG_1	4	+	2013	15	full-splice_match	ALB	ENST00000295897	2263	15	50	200	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_534_CONTIG_1	19	+	424	4	full-splice_match	APOC2	ENST00000252490	717	4	65	228	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	39	341	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2285_CONTIG_1	13	-	425	5	incomplete-splice_match	VPS36	ENST00000378060	4417	14	14	3978	internal_fragment	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	B	coding	137	411	15	425	50	0.542	0.458	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3648_CONTIG_1	6	+	1564	6	full-splice_match	PTP4A1	ENST00000370651	5088	6	464	3060	multi-exon	FALSE	canonical	0	0	1093	2	NA	0	0	FALSE	NA	NA	0	A	coding	173	519	690	1208	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3828_CONTIG_1	10	+	1600	12	novel_in_catalog	PDCD4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1460	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.684	0.316	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4289_CONTIG_1	11	+	517	4	full-splice_match	SAA1	ENST00000356524	615	4	90	8	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6175_CONTIG_1	4	-	1018	10	full-splice_match	BDH2	ENST00000296424	1126	10	50	58	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	A	coding	245	735	72	806	50	0.36	0.64	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4959_CONTIG_1	3	-	1096	5	full-splice_match	SELK	ENST00000541726	817	5	100	-379	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3264_CONTIG_1	17	+	1460	8	novel_in_catalog	SERPINF1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1084	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	88	1341	15	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3280_CONTIG_1	12	-	221	2	incomplete-splice_match	C1R	ENST00000535233	1020	7	800	-1	5prime_fragment	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8402_CONTIG_1	2	-	486	4	full-splice_match	FABP1	ENST00000295834	546	4	54	6	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	46	426	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7580_CONTIG_1	2	+	1601	8	full-splice_match	KHK	ENST00000260599	2411	8	25	785	multi-exon	FALSE	canonical	0	0	1299	2	NA	0	0	FALSE	NA	NA	0	C	coding	298	894	489	1382	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_860_CONTIG_1	4	+	1554	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	528	181	internal_fragment	FALSE	canonical	0	0	1414	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	525	1388	65	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2136_CONTIG_1	4	-	1076	10	incomplete-splice_match	GC	ENST00000503472	1466	12	316	74	5prime_fragment	FALSE	canonical	0	0	41	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4786_CONTIG_1	15	+	934	4	full-splice_match	B2M	ENST00000558401	1715	4	36	745	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3064_CONTIG_1	19	-	2293	7	novel_not_in_catalog	PALM3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	132	2	NA	0	0	TRUE	NA	NA	0	A	coding	688	2064	92	2155	25	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1998_CONTIG_1	4	+	1677	12	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	249	3prime_fragment	FALSE	canonical	0	0	1467	2	NA	0	0	FALSE	NA	NA	0	C	coding	546	1638	40	1677	50	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1638_CONTIG_1	12	+	1592	6	novel_in_catalog	HSP90B1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1313	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.576	0.424	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4464_CONTIG_1	16	-	1337	6	full-splice_match	LCAT	ENST00000264005	1507	6	-12	182	multi-exon	FALSE	canonical	0	0	196	2	NA	1	0	FALSE	NA	NA	0	C	coding	431	1293	43	1335	15	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8165_CONTIG_1	19	-	636	5	novel_not_in_catalog	CHMP2A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	20	2	NA	0	0	TRUE	NA	NA	0	A	coding	164	492	45	536	30	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5821_CONTIG_1	17	-	912	7	full-splice_match	DCXR	ENST00000580320	915	7	-3	6	multi-exon	FALSE	canonical	0	0	252	2	NA	0	0	FALSE	NA	NA	0	C	coding	87	261	574	834	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4994_CONTIG_1	19	-	1882	7	novel_in_catalog	CYP2A6	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	30	2	NA	2	0	FALSE	NA	NA	0	C	coding	240	720	297	1016	40	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_847_CONTIG_1	5	+	1546	11	incomplete-splice_match	TARS	ENST00000541634	2458	18	900	12	internal_fragment	FALSE	canonical	0	0	1055	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5108_CONTIG_1	8	-	1667	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1064	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4549_CONTIG_1	6	+	1574	10	novel_in_catalog	SIRT5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1077	2	NA	0	0	FALSE	NA	NA	0	A	coding	278	834	317	1150	35	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8433_CONTIG_1	6	-	1708	10	fusion	HLA-C_HLA-B	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	61	2	NA	4	0	TRUE	NA	NA	0	A	coding	366	1098	265	1362	35	0.95	0.05	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1734_CONTIG_1	16	+	1064	3	full-splice_match	HP	ENST00000566821	3024	3	1900	60	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4898_CONTIG_1	3	+	1468	2	full-splice_match	CTNNB1	ENST00000482042	1366	2	-222	120	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7563_CONTIG_1	10	+	941	2	antisense	novelGene_NRAP_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	137	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_544_CONTIG_1	4	+	1627	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	413	223	internal_fragment	FALSE	canonical	0	0	1529	2	NA	1	0	FALSE	NA	NA	0	C	coding	499	1497	7	1503	30	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_323_CONTIG_1	4	+	2015	15	full-splice_match	ALB	ENST00000295897	2263	15	48	200	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1366_CONTIG_1	9	-	1343	7	full-splice_match	FBP1	ENST00000375326	1462	7	0	119	multi-exon	FALSE	canonical	0	0	367	2	NA	0	0	FALSE	NA	NA	0	C	coding	338	1014	198	1211	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4221_CONTIG_1	14	+	1451	2	antisense	novelGene_SERPINA10_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	747	2	NA	0	0	FALSE	NA	NA	0	A	coding	133	399	358	756	20	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7591_CONTIG_1	6	+	1772	11	full-splice_match	SLC22A1	ENST00000366963	1948	11	112	64	multi-exon	FALSE	canonical	0	0	1633	2	NA	0	0	FALSE	NA	NA	0	C	coding	554	1662	36	1697	10	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2256_CONTIG_1	12	-	1727	16	full-splice_match	AAAS	ENST00000209873	1840	16	32	81	multi-exon	FALSE	canonical	0	0	257	2	NA	0	0	FALSE	NA	NA	0	A	coding	531	1593	135	1727	15	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7642_CONTIG_1	16	+	769	6	incomplete-splice_match	CES2	ENST00000568470	3391	12	2439	183	internal_fragment	FALSE	canonical	0	0	484	2	NA	0	0	FALSE	NA	NA	0	C	coding	206	618	51	668	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1166_CONTIG_1	4	+	1848	2	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	293	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1288_CONTIG_1	4	+	1979	15	full-splice_match	ALB	ENST00000295897	2263	15	48	236	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7932_CONTIG_1	4	-	1745	4	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	902	-980	5prime_fragment	FALSE	canonical	0	0	118	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5620_CONTIG_1	19	+	1042	3	incomplete-splice_match	NUCB1	ENST00000485798	938	4	182	-286	internal_fragment	FALSE	canonical	0	0	129	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_694_CONTIG_1	18	-	731	5	full-splice_match	CYB5A	ENST00000340533	834	5	72	31	multi-exon	FALSE	canonical	0	0	198	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	70	471	35	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5909_CONTIG_1	14	+	1575	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	0	multi-exon	FALSE	canonical	0	0	1133	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_105_CONTIG_1	4	+	1558	8	full-splice_match	FGB	ENST00000302068	1975	8	55	362	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_65_CONTIG_1	1	-	473	4	full-splice_match	APOA2	ENST00000367990	474	4	0	1	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_720_CONTIG_1	11	+	1297	9	incomplete-splice_match	SWAP70	ENST00000447399	3538	11	343	1898	internal_fragment	FALSE	canonical	0	0	1237	2	NA	0	0	FALSE	NA	NA	0	A	coding	421	1263	34	1296	50	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_989_CONTIG_1	X	+	1506	11	full-splice_match	PGK1	ENST00000373316	4887	11	45	3336	multi-exon	FALSE	canonical	0	0	1335	2	NA	0	0	FALSE	NA	NA	0	C	coding	417	1251	123	1373	35	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_755_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6298_CONTIG_1	4	+	1945	15	full-splice_match	ALB	ENST00000295897	2263	15	50	268	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4988_CONTIG_1	4	+	1710	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	362	191	internal_fragment	FALSE	canonical	0	0	1580	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	58	1554	45	0.22	0.78	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4665_CONTIG_1	7	+	1082	7	full-splice_match	TMEM176A	ENST00000484928	1530	7	441	7	multi-exon	FALSE	canonical	0	0	806	2	NA	0	0	FALSE	NA	NA	0	C	coding	252	756	90	845	15	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4576_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4241_CONTIG_1	2	+	810	6	full-splice_match	EEF1B2	ENST00000392222	1098	6	286	2	multi-exon	FALSE	canonical	0	0	612	2	NA	0	0	FALSE	NA	NA	0	C	coding	225	675	90	764	15	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4852_CONTIG_1	11	-	1578	10	full-splice_match	HPX	ENST00000265983	1652	10	72	2	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	30	1415	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5721_CONTIG_1	X	+	547	3	full-splice_match	TMSB4X	ENST00000451311	628	3	-1	82	multi-exon	FALSE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2403_CONTIG_1	14	-	827	5	novel_in_catalog	ZFYVE26	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	A	coding	237	711	116	826	35	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_762_CONTIG_1	6	+	2399	18	full-splice_match	CFB	ENST00000425368	2862	18	385	78	multi-exon	FALSE	canonical	0	0	2267	2	NA	0	0	FALSE	NA	NA	0	C	coding	757	2271	129	2399	15	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3905_CONTIG_1	5	-	2142	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	-86	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.274	0.726	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3883_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	23	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8009_CONTIG_1	16	+	1076	7	incomplete-splice_match	LONP2	ENST00000285737	8199	15	15	7108	3prime_fragment	FALSE	canonical	0	0	1060	2	NA	1	0	FALSE	NA	NA	0	A	coding	332	996	79	1074	10	0.316	0.684	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3407_CONTIG_1	11	-	1562	10	full-splice_match	HPX	ENST00000265983	1652	10	77	13	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2417_CONTIG_1	1	+	1020	5	novel_in_catalog	ESPN	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	648	2	NA	0	0	FALSE	NA	NA	0	B	coding	238	714	80	793	50	0.598	0.402	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4634_CONTIG_1	4	+	1845	8	full-splice_match	FGB	ENST00000302068	1975	8	56	74	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2742_CONTIG_1	8	+	659	4	full-splice_match	NDUFB9	ENST00000276689	711	4	49	3	multi-exon	FALSE	canonical	0	0	443	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	36	572	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5166_CONTIG_1	12	+	816	4	full-splice_match	PEBP1	ENST00000261313	1697	4	245	636	multi-exon	FALSE	canonical	0	0	453	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	108	668	0	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8410_CONTIG_1	3	+	2302	17	full-splice_match	TF	ENST00000402696	2968	17	439	227	multi-exon	FALSE	canonical	0	0	2108	2	NA	1	0	FALSE	NA	NA	0	C	coding	698	2094	47	2140	40	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2072_CONTIG_1	4	+	2035	15	full-splice_match	ALB	ENST00000295897	2263	15	50	178	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5519_CONTIG_1	15	+	1489	5	full-splice_match	CLK3	ENST00000566926	646	5	-15	-828	multi-exon	FALSE	canonical	0	0	317	2	NA	0	0	FALSE	NA	NA	0	A	coding	110	330	265	594	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5426_CONTIG_1	17	-	1213	5	full-splice_match	CBX1	ENST00000225603	2232	5	59	960	multi-exon	FALSE	canonical	0	0	195	2	NA	1	0	FALSE	NA	NA	0	A	coding	185	555	233	787	20	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5382_CONTIG_1	4	+	2055	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	35	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2304_CONTIG_1	18	+	554	4	full-splice_match	TTR	ENST00000237014	957	4	151	252	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4452_CONTIG_1	4	+	2020	15	full-splice_match	ALB	ENST00000295897	2263	15	50	193	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2997_CONTIG_1	7	+	1605	13	full-splice_match	PMPCB	ENST00000249269	2472	13	34	833	multi-exon	FALSE	canonical	0	0	1409	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7998_CONTIG_1	13	-	1731	3	full-splice_match	TSC22D1	ENST00000261489	1749	3	-8	26	multi-exon	FALSE	canonical	0	0	350	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	256	657	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4607_CONTIG_1	19	-	738	4	full-splice_match	TMEM205	ENST00000593256	792	4	28	26	multi-exon	TRUE	canonical	0	0	146	2	NA	0	0	FALSE	NA	NA	0	A	coding	189	567	156	722	30	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5556_CONTIG_1	19	+	770	7	full-splice_match	GPX4	ENST00000354171	908	7	133	5	multi-exon	FALSE	canonical	0	0	535	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1179_CONTIG_1	16	+	1202	5	full-splice_match	HP	ENST00000398131	1252	5	17	33	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_53_CONTIG_1	19	+	476	4	full-splice_match	RPS15	ENST00000586686	599	4	18	105	multi-exon	FALSE	canonical	0	0	345	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	22	456	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1302_CONTIG_1	4	+	2037	15	full-splice_match	ALB	ENST00000295897	2263	15	48	178	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2170_CONTIG_1	5	-	759	3	full-splice_match	GLRX	ENST00000237858	1211	3	276	176	multi-exon	FALSE	canonical	0	0	274	2	NA	2	0	FALSE	NA	NA	0	A	coding	106	318	68	385	35	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5503_CONTIG_1	14	+	715	2	full-splice_match	ANG	ENST00000397990	742	2	7	20	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	114	554	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7976_CONTIG_1	10	+	1631	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	36	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1193_CONTIG_1	16	+	1081	3	full-splice_match	HP	ENST00000566821	3024	3	1900	43	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3341_CONTIG_1	4	-	1582	4	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	653	2	NA	1	0	FALSE	NA	NA	0	C	coding	231	693	635	1327	20	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2596_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4858_CONTIG_1	19	-	767	5	full-splice_match	BLVRB	ENST00000263368	873	5	94	12	multi-exon	FALSE	canonical	0	0	137	2	NA	0	0	FALSE	NA	NA	0	C	coding	206	618	59	676	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7375_CONTIG_1	19	+	493	4	full-splice_match	RPS15	ENST00000586686	599	4	18	88	multi-exon	FALSE	canonical	0	0	345	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	22	456	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7562_CONTIG_1	15	+	929	4	full-splice_match	B2M	ENST00000558401	1715	4	36	750	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5350_CONTIG_1	14	+	1525	15	incomplete-splice_match	MTHFD1	ENST00000216605	3135	28	947	663	internal_fragment	TRUE	canonical	0	0	1410	2	NA	0	0	FALSE	NA	NA	0	B	coding	495	1485	41	1525	20	0.7	0.3	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_527_CONTIG_1	16	+	1087	3	full-splice_match	HP	ENST00000566821	3024	3	1911	26	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1544_CONTIG_1	4	+	1860	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	28	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8085_CONTIG_1	18	+	554	4	full-splice_match	TTR	ENST00000237014	957	4	151	252	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7876_CONTIG_1	6	-	1704	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	43	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7025_CONTIG_1	12	+	566	2	incomplete-splice_match	PEBP1	ENST00000542939	708	3	126	16	internal_fragment	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1197_CONTIG_1	3	+	2284	17	full-splice_match	TF	ENST00000402696	2968	17	436	248	multi-exon	FALSE	canonical	0	0	2111	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	50	2143	65	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1270_CONTIG_1	2	-	918	5	fusion	IGKV2-28_AC096579.7	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	80	2	NA	2	0	TRUE	NA	NA	0	A	coding	140	420	32	451	0	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1458_CONTIG_1	4	+	1999	15	full-splice_match	ALB	ENST00000295897	2263	15	50	214	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3181_CONTIG_1	4	+	1991	15	full-splice_match	ALB	ENST00000295897	2263	15	48	224	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4589_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1797_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	50	165	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_233_CONTIG_1	4	-	1508	10	full-splice_match	FGG	ENST00000404648	1760	10	193	59	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_603_CONTIG_1	1	-	820	4	novel_in_catalog	CAPZB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	B	coding	99	297	52	348	20	0.512	0.488	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6148_CONTIG_1	5	-	1320	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	736	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6632_CONTIG_1	2	+	2124	2	intergenic	novelGene_131	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	212	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.48	0.52	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5756_CONTIG_1	6	+	1405	8	novel_not_in_catalog	HLA-E	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	850	2	NA	0	0	TRUE	NA	NA	0	C	coding	275	825	21	845	75	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_463_CONTIG_1	15	+	738	2	full-splice_match	TRIM69	ENST00000560141	3162	2	169	2255	multi-exon	FALSE	canonical	0	0	383	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2523_CONTIG_1	11	+	1405	9	incomplete-splice_match	F2	ENST00000311907	2023	14	585	33	internal_fragment	FALSE	canonical	0	0	1196	2	NA	0	0	FALSE	NA	NA	0	C	coding	428	1284	54	1337	40	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4800_CONTIG_1	9	+	759	6	full-splice_match	ORM1	ENST00000259396	802	6	42	1	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5672_CONTIG_1	19	-	1465	13	full-splice_match	STAP2	ENST00000594605	1426	13	-50	11	multi-exon	FALSE	canonical	0	0	276	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	175	1383	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3191_CONTIG_1	11	+	1662	8	full-splice_match	LDHA	ENST00000422447	2416	8	175	579	multi-exon	FALSE	canonical	0	0	932	2	NA	0	0	FALSE	NA	NA	0	C	coding	332	996	99	1094	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7549_CONTIG_1	1	+	923	2	full-splice_match	APCS	ENST00000255040	926	2	0	3	multi-exon	FALSE	canonical	0	0	161	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	98	766	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_115_CONTIG_1	4	+	2196	15	full-splice_match	ALB	ENST00000295897	2263	15	50	17	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1346_CONTIG_1	6	+	1122	2	genic_intron	novelGene_793	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	220	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1072_CONTIG_1	14	-	1005	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	457	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	319	957	47	1003	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3129_CONTIG_1	6	-	539	5	full-splice_match	MPC1	ENST00000360961	962	5	58	365	multi-exon	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	C	coding	109	327	65	391	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7662_CONTIG_1	1	+	890	2	full-splice_match	APCS	ENST00000255040	926	2	1	35	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4219_CONTIG_1	9	+	381	4	novel_in_catalog	ORM1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	284	2	NA	0	0	FALSE	NA	NA	0	C	coding	73	219	129	347	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6285_CONTIG_1	11	-	867	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	32	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_696_CONTIG_1	18	+	337	2	incomplete-splice_match	TTR	ENST00000237014	957	4	419	201	internal_fragment	FALSE	canonical	0	0	94	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5396_CONTIG_1	12	+	654	6	full-splice_match	MYL6	ENST00000547649	655	6	-3	4	multi-exon	FALSE	canonical	0	0	470	2	NA	0	0	FALSE	NA	NA	0	C	coding	151	453	44	496	0	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5011_CONTIG_1	4	+	1904	15	full-splice_match	ALB	ENST00000295897	2263	15	48	311	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	1	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7366_CONTIG_1	4	+	290	2	incomplete-splice_match	ALB	ENST00000514786	577	5	286	1	internal_fragment	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_934_CONTIG_1	7	+	582	4	incomplete-splice_match	GSTK1	ENST00000479303	1185	7	16	587	3prime_fragment	FALSE	canonical	0	0	325	2	NA	0	0	FALSE	NA	NA	0	C	coding	180	540	43	582	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6660_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	435	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	42	1022	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5671_CONTIG_1	22	-	1466	2	antisense	novelGene_GGA1_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4756_CONTIG_1	10	+	1607	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	60	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_462_CONTIG_1	9	+	742	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	15	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_328_CONTIG_1	9	+	723	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	35	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6300_CONTIG_1	4	+	2021	15	full-splice_match	ALB	ENST00000295897	2263	15	50	192	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7806_CONTIG_1	11	-	576	2	full-splice_match	IFITM3	ENST00000399808	808	2	220	12	multi-exon	FALSE	canonical	0	0	266	2	NA	0	0	FALSE	NA	NA	0	C	coding	133	399	18	416	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6028_CONTIG_1	16	+	691	5	full-splice_match	COX4I1	ENST00000253452	708	5	11	6	multi-exon	FALSE	canonical	0	0	432	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	174	566	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_400_CONTIG_1	1	-	1178	7	novel_not_in_catalog	TXNDC12	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	205	2	NA	0	0	TRUE	NA	NA	0	C	coding	188	564	109	672	35	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4184_CONTIG_1	4	-	1843	13	full-splice_match	ETNPPL	ENST00000296486	2099	13	69	187	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	87	1583	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8148_CONTIG_1	1	-	425	3	novel_not_in_catalog	KCNT2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4735_CONTIG_1	3	-	1197	12	full-splice_match	ATG3	ENST00000283290	1570	12	319	54	multi-exon	FALSE	canonical	0	0	188	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8404_CONTIG_1	1	-	738	5	full-splice_match	MPC2	ENST00000367846	2177	5	44	1395	multi-exon	FALSE	canonical	0	0	264	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	156	536	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2567_CONTIG_1	4	+	1448	11	full-splice_match	ALB	ENST00000511370	1519	11	73	-2	multi-exon	FALSE	canonical	0	0	1313	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	424	1287	55	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_589_CONTIG_1	7	+	1697	8	novel_not_in_catalog	IFRD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1010	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1368_CONTIG_1	4	-	1487	10	full-splice_match	FGG	ENST00000404648	1760	10	196	77	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	40	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4769_CONTIG_1	19	-	1984	13	full-splice_match	CYP4F2	ENST00000221700	2407	13	46	377	multi-exon	TRUE	canonical	0	0	49	2	NA	3	0	FALSE	NA	NA	0	A	coding	520	1560	51	1610	20	0.226	0.774	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8029_CONTIG_1	4	-	2077	5	full-splice_match	FGA	ENST00000403106	2248	5	97	74	multi-exon	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	coding	575	1725	190	1914	45	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_939_CONTIG_1	7	-	1132	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	677	multi-exon	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	85	1131	20	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_368_CONTIG_1	7	-	1085	9	full-splice_match	PON3	ENST00000265627	1105	9	-24	44	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	350	1050	36	1085	20	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1973_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	48	167	multi-exon	FALSE	canonical	0	0	1894	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3616_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7118_CONTIG_1	14	+	1533	4	incomplete-splice_match	SERPINA5	ENST00000554276	2210	5	640	37	internal_fragment	FALSE	canonical	0	0	511	2	NA	0	0	FALSE	NA	NA	0	C	coding	208	624	68	691	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6363_CONTIG_1	20	+	1433	2	incomplete-splice_match	AAR2	ENST00000320849	2430	4	983	14	internal_fragment	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6421_CONTIG_1	3	+	1527	12	incomplete-splice_match	ITIH1	ENST00000537050	2486	18	956	3	internal_fragment	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	365	1095	283	1377	15	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3974_CONTIG_1	11	+	261	3	incomplete-splice_match	ACAT1	ENST00000524833	506	4	-3	248	3prime_fragment	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_394_CONTIG_1	19	+	578	3	full-splice_match	APOC4	ENST00000592954	615	3	36	1	multi-exon	FALSE	canonical	0	0	222	2	NA	1	0	FALSE	NA	NA	0	C	coding	127	381	5	385	5	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4350_CONTIG_1	19	-	1397	3	novel_not_in_catalog	KEAP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	91	2	NA	1	0	TRUE	NA	NA	0	A	coding	244	732	139	870	5	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7090_CONTIG_1	9	-	442	2	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	996	1013	5prime_fragment	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5586_CONTIG_1	9	-	1828	6	full-splice_match	AQP3	ENST00000297991	1849	6	15	6	multi-exon	FALSE	canonical	0	0	174	2	NA	2	0	FALSE	NA	NA	0	C	coding	292	876	67	942	25	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8732_CONTIG_1	X	+	1416	7	full-splice_match	RBM3	ENST00000376759	2162	7	-51	797	multi-exon	FALSE	canonical	0	0	611	2	NA	1	0	FALSE	NA	NA	0	A	coding	157	471	115	585	55	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6484_CONTIG_1	4	-	385	3	incomplete-splice_match	FGG	ENST00000443553	789	7	528	-124	internal_fragment	FALSE	canonical	0	0	115	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1895_CONTIG_1	4	+	406	3	incomplete-splice_match	HGFAC	ENST00000506132	743	4	229	108	internal_fragment	FALSE	canonical	0	0	306	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.414	0.586	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5834_CONTIG_1	1	-	1497	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	72	25	multi-exon	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	48	1439	50	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_929_CONTIG_1	4	+	1956	15	full-splice_match	ALB	ENST00000295897	2263	15	50	257	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2776_CONTIG_1	14	+	2134	16	full-splice_match	SRP54	ENST00000216774	2279	16	143	2	multi-exon	FALSE	canonical	0	0	1631	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.382	0.618	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3741_CONTIG_1	9	+	339	3	incomplete-splice_match	PMPCA	ENST00000444897	1029	6	-135	825	internal_fragment	FALSE	canonical	0	0	249	2	NA	0	0	FALSE	NA	NA	0	B	coding	110	330	10	339	20	0.522	0.478	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_19_CONTIG_1	1	+	396	4	incomplete-splice_match	ELF3	ENST00000446188	769	7	355	18	internal_fragment	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	C	coding	81	243	152	394	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6545_CONTIG_1	1	-	792	6	incomplete-splice_match	GBP1	ENST00000370473	3035	11	130	2113	internal_fragment	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	coding	234	702	91	792	5	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7067_CONTIG_1	2	+	1821	10	incomplete-splice_match	SLC4A1AP	ENST00000326019	2959	14	416	722	3prime_fragment	FALSE	canonical	0	0	1741	2	NA	2	0	FALSE	NA	NA	0	A	coding	597	1791	29	1819	55	0.372	0.628	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6763_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8210_CONTIG_1	9	+	1010	5	novel_not_in_catalog	TJP2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	B	coding	101	303	303	605	30	0.57	0.43	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6188_CONTIG_1	2	+	983	8	full-splice_match	SPP2	ENST00000168148	1024	8	19	22	multi-exon	FALSE	canonical	0	0	715	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	97	702	20	0.222	0.778	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4398_CONTIG_1	9	-	1001	9	novel_not_in_catalog	ALDOB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	76	2	NA	0	0	TRUE	NA	NA	0	C	coding	305	915	87	1001	25	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3903_CONTIG_1	19	+	594	7	full-splice_match	GPX4	ENST00000354171	908	7	136	178	multi-exon	FALSE	canonical	0	0	532	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3307_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	56	337	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6302_CONTIG_1	10	+	567	3	incomplete-splice_match	FAM21C	ENST00000471102	2018	4	1334	117	internal_fragment	FALSE	canonical	0	0	343	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5069_CONTIG_1	16	+	731	4	novel_not_in_catalog	ZG16	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	331	2	NA	0	0	FALSE	NA	NA	0	A	coding	167	501	144	644	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8507_CONTIG_1	11	+	683	2	full-splice_match	RP11-356J5.12	ENST00000419895	1711	2	82	946	multi-exon	FALSE	canonical	0	0	227	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6279_CONTIG_1	17	+	1525	6	full-splice_match	MPDU1	ENST00000572836	1523	6	0	-2	multi-exon	FALSE	canonical	0	0	772	2	NA	0	0	FALSE	NA	NA	0	C	coding	259	777	12	788	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7380_CONTIG_1	12	+	923	4	full-splice_match	MGST1	ENST00000396210	914	4	-4	-5	multi-exon	FALSE	canonical	0	0	309	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4590_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	48	159	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_918_CONTIG_1	11	-	542	4	full-splice_match	SAA2	ENST00000256733	563	4	8	13	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4795_CONTIG_1	6	+	1371	4	novel_not_in_catalog	AIG1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	382	2	NA	0	0	FALSE	NA	NA	0	C	coding	135	405	46	450	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7050_CONTIG_1	X	+	1049	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	16	multi-exon	FALSE	canonical	0	0	524	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	180	692	15	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6912_CONTIG_1	19	+	1171	4	full-splice_match	APOE	ENST00000252486	1208	4	37	0	multi-exon	FALSE	canonical	0	0	310	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	75	1025	0	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3049_CONTIG_1	13	+	1340	10	full-splice_match	PHF11	ENST00000378319	1359	10	6	13	multi-exon	FALSE	canonical	0	0	876	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4878_CONTIG_1	1	-	467	4	full-splice_match	APOA2	ENST00000367990	474	4	4	3	multi-exon	FALSE	canonical	0	0	30	2	NA	1	0	FALSE	NA	NA	0	C	coding	100	300	55	354	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5306_CONTIG_1	4	+	1297	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	184	38	internal_fragment	FALSE	canonical	0	0	1202	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	313	1176	40	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8602_CONTIG_1	18	-	2343	10	novel_in_catalog	MYOM1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	A	coding	503	1509	195	1703	45	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6760_CONTIG_1	19	+	967	5	full-splice_match	PGLS	ENST00000252603	1028	5	23	38	multi-exon	FALSE	canonical	0	0	660	2	NA	0	0	FALSE	NA	NA	0	C	coding	258	774	22	795	25	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3258_CONTIG_1	10	-	380	2	incomplete-splice_match	GLUD1	ENST00000544149	1537	13	1211	-54	5prime_fragment	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8419_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	48	183	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7750_CONTIG_1	9	+	797	7	novel_not_in_catalog	ORM1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	760	2	NA	2	0	TRUE	NA	NA	0	C	coding	201	603	37	639	25	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7137_CONTIG_1	4	+	1804	8	full-splice_match	FGB	ENST00000302068	1975	8	59	112	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1810_CONTIG_1	8	+	1380	2	incomplete-splice_match	SDC2	ENST00000519914	1318	5	481	-543	internal_fragment	FALSE	canonical	0	0	121	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1660_CONTIG_1	X	+	1559	2	full-splice_match	GJB1	ENST00000374022	1904	2	27	318	multi-exon	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	69	917	15	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_760_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	50	170	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_751_CONTIG_1	2	-	1164	7	incomplete-splice_match	HADHA	ENST00000380649	3037	20	1572	301	5prime_fragment	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	A	coding	267	801	47	847	10	0.278	0.722	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6919_CONTIG_1	4	+	1627	8	full-splice_match	FGB	ENST00000302068	1975	8	55	293	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7782_CONTIG_1	14	-	1012	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	451	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5365_CONTIG_1	12	+	1444	4	full-splice_match	PEBP1	ENST00000261313	1697	4	245	8	multi-exon	FALSE	canonical	0	0	453	2	NA	1	0	FALSE	NA	NA	0	C	coding	187	561	108	668	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3142_CONTIG_1	1	-	390	4	novel_not_in_catalog	APOA2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	34	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.938	0.062	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6957_CONTIG_1	9	+	761	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	20	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7442_CONTIG_1	14	-	1340	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	219	63	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	47	1300	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1741_CONTIG_1	10	-	594	4	incomplete-splice_match	RBP4	ENST00000371469	814	6	172	48	5prime_fragment	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	61	453	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5339_CONTIG_1	9	-	1983	7	full-splice_match	STOM	ENST00000286713	3010	7	-34	1061	multi-exon	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	coding	193	579	338	916	25	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1355_CONTIG_1	11	+	621	2	full-splice_match	IFITM2	ENST00000602569	605	2	-17	1	multi-exon	FALSE	canonical	0	0	239	2	NA	0	0	FALSE	NA	NA	0	C	coding	112	336	54	389	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6841_CONTIG_1	11	+	523	4	full-splice_match	APOC3	ENST00000227667	550	4	15	12	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7733_CONTIG_1	5	+	2361	8	incomplete-splice_match	HMGCR	ENST00000287936	4585	20	1790	434	internal_fragment	FALSE	canonical	0	0	978	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1495_CONTIG_1	15	+	1418	3	full-splice_match	B2M	ENST00000559916	1081	3	4	-341	multi-exon	FALSE	canonical	0	0	376	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2830_CONTIG_1	19	+	330	4	full-splice_match	EIF3K	ENST00000590134	711	4	409	-28	multi-exon	FALSE	canonical	0	0	266	2	NA	0	0	FALSE	NA	NA	0	A	coding	94	282	14	295	5	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6580_CONTIG_1	18	+	581	4	full-splice_match	TTR	ENST00000237014	957	4	151	225	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	55	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4943_CONTIG_1	X	+	727	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1444	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1877_CONTIG_1	3	+	1868	8	novel_not_in_catalog	HRG	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1203	2	NA	0	0	TRUE	NA	NA	0	C	coding	412	1236	19	1254	20	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6160_CONTIG_1	12	-	1737	2	full-splice_match	APOF	ENST00000398189	1715	2	-34	12	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	44	1090	20	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6714_CONTIG_1	3	+	1443	4	incomplete-splice_match	WDR6	ENST00000471162	3565	5	2701	-579	internal_fragment	FALSE	canonical	0	0	323	2	NA	0	0	FALSE	NA	NA	0	A	coding	259	777	8	784	15	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4331_CONTIG_1	12	+	1299	2	full-splice_match	METTL7B	ENST00000394252	1506	2	190	17	multi-exon	FALSE	canonical	0	0	517	2	NA	0	0	FALSE	NA	NA	0	C	coding	244	732	20	751	50	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2813_CONTIG_1	4	+	1936	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	168	159	internal_fragment	FALSE	canonical	0	0	1774	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	252	1748	35	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2974_CONTIG_1	16	+	979	2	incomplete-splice_match	HP	ENST00000398131	1252	5	244	29	internal_fragment	FALSE	canonical	0	0	65	2	NA	2	0	FALSE	NA	NA	0	C	coding	228	684	158	841	40	0.234	0.766	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3681_CONTIG_1	17	-	1264	8	novel_not_in_catalog	VTN	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	129	2	NA	0	0	TRUE	NA	NA	0	C	coding	394	1182	66	1247	15	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6566_CONTIG_1	16	+	892	8	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	595	2	NA	0	0	TRUE	NA	NA	0	C	coding	235	705	31	735	10	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5037_CONTIG_1	11	+	530	4	full-splice_match	APOC3	ENST00000227667	550	4	13	7	multi-exon	FALSE	canonical	0	0	228	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	50	346	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_605_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7064_CONTIG_1	11	-	609	5	incomplete-splice_match	HPX	ENST00000265983	1652	10	697	346	5prime_fragment	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	173	519	89	607	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7752_CONTIG_1	11	-	1529	10	full-splice_match	HPX	ENST00000265983	1652	10	77	46	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7449_CONTIG_1	5	-	1079	8	full-splice_match	GNB2L1	ENST00000512805	1403	8	303	21	multi-exon	FALSE	canonical	0	0	215	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	107	1057	70	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4785_CONTIG_1	19	+	1116	8	full-splice_match	RPL13A	ENST00000391857	1181	8	54	11	multi-exon	FALSE	canonical	0	0	547	2	NA	0	0	FALSE	NA	NA	0	C	coding	203	609	23	631	30	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1087_CONTIG_1	1	-	2025	11	full-splice_match	ALDH9A1	ENST00000354775	2696	11	298	373	multi-exon	FALSE	canonical	0	0	188	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	80	1561	75	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6940_CONTIG_1	3	-	1866	6	novel_not_in_catalog	CSRNP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	28	2	NA	0	0	TRUE	NA	NA	0	B	coding	477	1431	160	1590	10	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3256_CONTIG_1	3	+	1761	17	full-splice_match	PDIA5	ENST00000316218	1799	17	38	0	multi-exon	FALSE	canonical	0	0	1536	2	NA	1	0	FALSE	NA	NA	0	C	coding	519	1557	58	1614	10	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4903_CONTIG_1	3	+	953	10	full-splice_match	NIT2	ENST00000394140	2520	10	49	1518	multi-exon	FALSE	canonical	0	0	781	2	NA	0	0	FALSE	NA	NA	0	A	coding	276	828	43	870	20	0.238	0.762	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6121_CONTIG_1	19	+	866	4	full-splice_match	FTL	ENST00000331825	878	4	8	4	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3363_CONTIG_1	14	-	854	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	154	442	internal_fragment	FALSE	canonical	0	0	526	2	NA	1	0	FALSE	NA	NA	0	C	coding	238	714	139	852	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4008_CONTIG_1	19	+	1165	4	full-splice_match	APOE	ENST00000252486	1208	4	42	1	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5167_CONTIG_1	19	-	838	2	novel_in_catalog	CTB-50L17.14	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.478	0.522	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4802_CONTIG_1	5	+	1761	8	full-splice_match	KCNN2	ENST00000264773	2515	8	703	51	multi-exon	FALSE	canonical	0	0	1206	2	NA	0	0	FALSE	NA	NA	0	A	coding	113	339	1153	1491	35	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8663_CONTIG_1	10	-	1192	8	full-splice_match	ECHS1	ENST00000368547	1617	8	334	91	multi-exon	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	290	870	23	892	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3342_CONTIG_1	14	-	1001	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	456	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	42	1001	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7949_CONTIG_1	4	-	1542	10	full-splice_match	FGG	ENST00000404648	1760	10	193	25	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8000_CONTIG_1	9	+	1197	3	full-splice_match	GNG10	ENST00000374293	1491	3	288	6	multi-exon	FALSE	canonical	0	0	225	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1299_CONTIG_1	22	-	1290	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	4	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	27	1235	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4671_CONTIG_1	16	+	295	3	incomplete-splice_match	NPIPA1	ENST00000472413	5343	28	3976	1072	internal_fragment	FALSE	canonical	0	0	274	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4880_CONTIG_1	6	-	1907	6	novel_not_in_catalog	VNN1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	230	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6372_CONTIG_1	17	-	673	4	incomplete-splice_match	VTN	ENST00000536498	2046	10	439	934	internal_fragment	FALSE	canonical	0	0	239	2	NA	0	0	FALSE	NA	NA	0	C	coding	15	45	629	673	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2371_CONTIG_1	X	+	1034	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	31	multi-exon	FALSE	canonical	0	0	524	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	180	692	20	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7689_CONTIG_1	6	+	1692	13	novel_in_catalog	C4B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1419	2	NA	0	0	FALSE	NA	NA	0	A	coding	491	1473	86	1558	20	0.292	0.708	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6837_CONTIG_1	X	+	1286	9	full-splice_match	HPRT1	ENST00000298556	1407	9	121	0	multi-exon	FALSE	canonical	0	0	647	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3495_CONTIG_1	17	-	1586	8	full-splice_match	VTN	ENST00000226218	2149	8	554	9	multi-exon	FALSE	canonical	0	0	129	2	NA	1	0	FALSE	NA	NA	0	C	coding	478	1434	66	1499	30	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2765_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_217_CONTIG_1	4	-	1665	13	full-splice_match	GC	ENST00000273951	1972	13	286	21	multi-exon	FALSE	canonical	0	0	116	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	60	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2201_CONTIG_1	1	-	1766	5	full-splice_match	AGT	ENST00000366667	2291	5	170	355	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	485	1455	46	1500	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3316_CONTIG_1	11	-	828	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	71	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	263	789	39	827	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3220_CONTIG_1	14	-	1038	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	425	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	330	990	48	1037	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1650_CONTIG_1	4	-	1628	3	novel_in_catalog	ADH1B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	137	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1775_CONTIG_1	17	-	320	3	incomplete-splice_match	APOH	ENST00000205948	1176	8	-27	883	internal_fragment	FALSE	canonical	0	0	129	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6732_CONTIG_1	2	+	953	2	novel_in_catalog	CAD	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	855	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1351_CONTIG_1	1	-	470	4	full-splice_match	APOA2	ENST00000367990	474	4	0	4	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_779_CONTIG_1	18	-	2575	14	full-splice_match	NARS	ENST00000256854	3099	14	391	133	multi-exon	FALSE	canonical	0	0	75	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3339_CONTIG_1	16	-	1915	14	full-splice_match	CES1	ENST00000361503	1835	14	90	-170	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	coding	567	1701	42	1742	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6896_CONTIG_1	6	+	994	8	incomplete-splice_match	SLC22A1	ENST00000539263	1598	10	697	-93	internal_fragment	FALSE	canonical	0	0	834	2	NA	0	0	FALSE	NA	NA	0	C	coding	253	759	140	898	15	0.256	0.744	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3663_CONTIG_1	19	+	1618	8	incomplete-splice_match	NUCB1	ENST00000263273	2240	12	606	16	internal_fragment	FALSE	canonical	0	0	686	2	NA	0	0	FALSE	NA	NA	0	C	coding	176	528	263	790	40	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_677_CONTIG_1	4	+	1565	8	full-splice_match	FGB	ENST00000302068	1975	8	63	347	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	1	1473	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3569_CONTIG_1	16	+	1105	3	full-splice_match	HP	ENST00000566821	3024	3	1900	19	multi-exon	FALSE	canonical	0	0	181	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	274	957	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5054_CONTIG_1	3	+	2261	17	full-splice_match	TF	ENST00000402696	2968	17	437	270	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5741_CONTIG_1	7	-	1115	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	66	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5135_CONTIG_1	X	-	871	7	full-splice_match	RPS4X	ENST00000316084	1526	7	82	573	multi-exon	FALSE	canonical	0	0	26	2	NA	1	0	FALSE	NA	NA	0	C	coding	263	789	24	812	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6836_CONTIG_1	3	+	1465	11	novel_not_in_catalog	CCDC66	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1322	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2796_CONTIG_1	16	-	1145	4	novel_not_in_catalog	CPPED1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	151	2	NA	0	0	TRUE	NA	NA	0	A	coding	258	774	82	855	25	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1441_CONTIG_1	10	+	1612	9	novel_in_catalog	FAM45A	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	928	2	NA	1	0	FALSE	NA	NA	0	A	coding	246	738	365	1102	30	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2837_CONTIG_1	13	+	425	2	incomplete-splice_match	SPATA13	ENST00000382095	6665	12	271	5969	internal_fragment	FALSE	canonical	0	0	280	2	NA	0	0	FALSE	NA	NA	0	B	coding	96	288	137	424	15	0.492	0.508	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5405_CONTIG_1	2	+	1532	9	novel_not_in_catalog	TMEM214	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	799	2	NA	0	0	TRUE	NA	NA	0	A	coding	224	672	252	923	10	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4523_CONTIG_1	3	+	1331	11	incomplete-splice_match	TF	ENST00000264998	2143	16	712	100	internal_fragment	FALSE	canonical	0	0	1225	2	NA	0	0	FALSE	NA	NA	0	C	coding	371	1113	145	1257	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6904_CONTIG_1	12	-	1175	10	full-splice_match	MMAB	ENST00000537496	1188	10	3	10	multi-exon	FALSE	canonical	0	0	154	2	NA	1	0	FALSE	NA	NA	0	A	coding	173	519	21	539	25	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7910_CONTIG_1	4	-	1562	10	full-splice_match	FGG	ENST00000404648	1760	10	193	5	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7521_CONTIG_1	4	+	2196	15	full-splice_match	ALB	ENST00000295897	2263	15	50	17	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7171_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8572_CONTIG_1	16	+	1672	6	full-splice_match	HMOX2	ENST00000570646	2147	6	458	17	multi-exon	FALSE	canonical	0	0	970	2	NA	1	0	FALSE	NA	NA	0	C	coding	316	948	148	1095	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6887_CONTIG_1	12	+	2045	4	full-splice_match	TMED2	ENST00000262225	2552	4	52	455	multi-exon	FALSE	canonical	0	0	535	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_178_CONTIG_1	1	-	366	2	incomplete-splice_match	AGT	ENST00000366667	2291	5	173	1752	internal_fragment	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	108	324	43	366	10	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1823_CONTIG_1	7	+	599	2	genic	AC018720.10	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	132	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_830_CONTIG_1	4	-	1002	3	novel_not_in_catalog	HELQ	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	86	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4028_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5584_CONTIG_1	11	+	1450	6	incomplete-splice_match	SERPING1	ENST00000378324	1751	7	268	33	internal_fragment	FALSE	canonical	0	0	963	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	192	1214	50	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5957_CONTIG_1	4	+	1152	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	260	71	internal_fragment	FALSE	canonical	0	0	1058	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	169	1032	45	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2539_CONTIG_1	15	+	933	4	full-splice_match	B2M	ENST00000558401	1715	4	36	746	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2288_CONTIG_1	10	+	1208	7	novel_not_in_catalog	CYP2E1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	872	2	NA	0	0	TRUE	NA	NA	0	C	coding	349	1047	8	1054	35	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8579_CONTIG_1	1	+	1759	8	incomplete-splice_match	SCP2	ENST00000371514	2811	16	912	140	internal_fragment	FALSE	canonical	0	0	804	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1556_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_520_CONTIG_1	9	-	785	3	novel_in_catalog	ALDOB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	177	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	75	470	35	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5330_CONTIG_1	19	+	478	4	full-splice_match	APOC2	ENST00000252490	717	4	55	184	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	49	351	55	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7492_CONTIG_1	1	-	1146	2	incomplete-splice_match	APH1A	ENST00000360244	2353	6	1069	138	5prime_fragment	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1799_CONTIG_1	9	+	778	6	full-splice_match	ORM1	ENST00000259396	802	6	18	6	multi-exon	FALSE	canonical	0	0	600	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	61	663	30	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8280_CONTIG_1	7	-	1453	4	full-splice_match	BET1	ENST00000222547	1504	4	20	31	multi-exon	FALSE	canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3204_CONTIG_1	1	-	1905	8	full-splice_match	B4GALT3	ENST00000319769	1911	8	-10	16	multi-exon	FALSE	canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	C	coding	393	1179	234	1412	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7722_CONTIG_1	17	-	291	3	incomplete-splice_match	PHB	ENST00000508009	451	5	318	-158	5prime_fragment	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6262_CONTIG_1	5	-	1728	3	full-splice_match	SEPP1	ENST00000514403	653	3	305	-1380	multi-exon	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4153_CONTIG_1	4	+	1545	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	278	64	multi-exon	FALSE	canonical	0	0	1078	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_802_CONTIG_1	17	-	1529	12	full-splice_match	CCDC47	ENST00000582252	1719	12	-12	202	multi-exon	FALSE	canonical	0	0	171	2	NA	0	0	FALSE	NA	NA	0	C	coding	446	1338	191	1528	45	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2378_CONTIG_1	4	+	1458	11	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	468	3prime_fragment	FALSE	canonical	0	0	1328	2	NA	0	0	FALSE	NA	NA	0	C	coding	473	1419	40	1458	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8212_CONTIG_1	7	+	1820	14	incomplete-splice_match	EIF3B	ENST00000397011	2966	19	1118	28	internal_fragment	FALSE	canonical	0	0	1381	2	NA	0	0	FALSE	NA	NA	0	A	coding	420	1260	105	1364	50	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5285_CONTIG_1	2	-	1639	7	novel_not_in_catalog	WDR33	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	227	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2626_CONTIG_1	12	-	2015	16	incomplete-splice_match	A2M	ENST00000318602	4844	36	238	2591	internal_fragment	FALSE	canonical	0	0	156	2	NA	1	0	FALSE	NA	NA	0	B	coding	648	1944	71	2014	45	0.612	0.388	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6549_CONTIG_1	4	+	707	5	novel_in_catalog	F11	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	541	2	NA	0	0	FALSE	NA	NA	0	A	coding	215	645	61	705	15	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7125_CONTIG_1	18	+	598	4	full-splice_match	TTR	ENST00000237014	957	4	151	208	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3075_CONTIG_1	4	+	2040	15	full-splice_match	ALB	ENST00000295897	2263	15	50	173	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	55	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4070_CONTIG_1	16	+	810	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	432	2	NA	0	0	TRUE	NA	NA	0	C	coding	205	615	31	645	10	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3548_CONTIG_1	7	+	801	4	novel_not_in_catalog	STEAP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	432	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6289_CONTIG_1	9	+	745	6	full-splice_match	ORM1	ENST00000259396	802	6	42	15	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2345_CONTIG_1	13	-	733	6	full-splice_match	TPT1	ENST00000530705	1028	6	264	31	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3357_CONTIG_1	11	+	943	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	45	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4557_CONTIG_1	8	-	1628	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1103	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7209_CONTIG_1	9	+	744	6	full-splice_match	ORM1	ENST00000259396	802	6	42	16	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8091_CONTIG_1	11	-	951	13	full-splice_match	MTCH2	ENST00000302503	2587	13	138	1498	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	A	coding	303	909	21	929	20	0.282	0.718	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1033_CONTIG_1	9	+	568	5	incomplete-splice_match	ORM1	ENST00000259396	802	6	42	192	3prime_fragment	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	177	531	37	567	50	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8222_CONTIG_1	16	+	222	4	novel_not_in_catalog	MT1E	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	79	2	NA	4	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5417_CONTIG_1	11	-	877	4	full-splice_match	APOA1	ENST00000236850	1227	4	326	24	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	41	841	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1609_CONTIG_1	15	-	414	6	incomplete-splice_match	ETFA	ENST00000559602	792	9	322	56	5prime_fragment	FALSE	canonical	0	0	56	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6255_CONTIG_1	12	-	1100	2	full-splice_match	APOF	ENST00000541105	1682	2	24	558	multi-exon	FALSE	canonical	0	0	70	2	NA	0	0	FALSE	NA	NA	0	C	coding	326	978	55	1032	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4183_CONTIG_1	19	+	815	4	full-splice_match	FTL	ENST00000331825	878	4	8	55	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2380_CONTIG_1	12	-	782	8	full-splice_match	NACA	ENST00000356769	2690	8	1910	-2	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	215	645	28	672	10	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_663_CONTIG_1	1	-	320	3	novel_not_in_catalog	CRP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	165	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.946	0.054	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1347_CONTIG_1	12	-	1677	7	novel_in_catalog	STAT6	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	B	coding	200	600	443	1042	40	0.668	0.332	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5478_CONTIG_1	11	+	1062	3	novel_not_in_catalog	TMEM86A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	328	2	NA	0	0	FALSE	NA	NA	0	A	coding	142	426	337	762	20	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5733_CONTIG_1	7	-	1669	11	full-splice_match	HNRNPA2B1	ENST00000356674	1711	11	3	39	multi-exon	FALSE	canonical	0	0	172	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	167	1189	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4546_CONTIG_1	4	+	1551	8	full-splice_match	FGB	ENST00000302068	1975	8	55	369	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6134_CONTIG_1	11	-	1085	3	full-splice_match	EIF4G2	ENST00000525606	690	3	224	-619	multi-exon	FALSE	canonical	0	0	190	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7808_CONTIG_1	15	+	1552	6	novel_not_in_catalog	GABPB1-AS1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	559	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4419_CONTIG_1	4	-	262	3	full-splice_match	FGG	ENST00000484695	354	3	-42	134	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1528_CONTIG_1	3	+	1550	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	22	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	40	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3214_CONTIG_1	12	+	1069	7	full-splice_match	RAN	ENST00000543796	2661	7	192	1400	multi-exon	FALSE	canonical	0	0	672	2	NA	0	0	FALSE	NA	NA	0	C	coding	216	648	67	714	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5877_CONTIG_1	19	+	500	6	full-splice_match	RPS19	ENST00000598742	2359	6	337	1522	multi-exon	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	36	470	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8641_CONTIG_1	4	+	1321	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1181	2	NA	0	0	TRUE	NA	NA	0	C	coding	250	750	42	791	65	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1169_CONTIG_1	19	-	812	5	full-splice_match	FDX1L	ENST00000393708	1012	5	-9	209	multi-exon	FALSE	canonical	0	0	173	2	NA	0	0	FALSE	NA	NA	0	A	coding	186	558	20	577	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2872_CONTIG_1	6	+	1586	4	full-splice_match	TUBB	ENST00000327892	2670	4	153	931	multi-exon	FALSE	canonical	0	0	430	2	NA	1	0	FALSE	NA	NA	0	C	coding	444	1332	154	1485	0	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1991_CONTIG_1	4	+	866	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	447	170	internal_fragment	FALSE	canonical	0	0	803	2	NA	1	0	FALSE	NA	NA	0	C	coding	257	771	75	845	30	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5738_CONTIG_1	1	-	1301	3	incomplete-splice_match	DUSP10	ENST00000366899	2676	4	637	738	5prime_fragment	FALSE	canonical	0	0	413	2	NA	0	0	FALSE	NA	NA	0	A	coding	324	972	77	1048	50	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2126_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7198_CONTIG_1	11	+	417	4	full-splice_match	APOC3	ENST00000227667	550	4	13	120	multi-exon	FALSE	canonical	0	0	228	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	50	346	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_635_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7320_CONTIG_1	10	-	1413	7	full-splice_match	PDLIM1	ENST00000329399	1452	7	-11	50	multi-exon	FALSE	canonical	0	0	216	2	NA	0	0	FALSE	NA	NA	0	C	coding	329	987	121	1107	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5183_CONTIG_1	19	-	1057	2	full-splice_match	PLIN5	ENST00000586133	907	2	0	-150	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_64_CONTIG_1	2	+	604	3	full-splice_match	PNKD	ENST00000248451	758	3	127	27	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	142	426	18	443	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2198_CONTIG_1	15	-	2141	2	full-splice_match	SLTM	ENST00000474342	505	2	47	-1683	multi-exon	FALSE	canonical	0	0	166	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5818_CONTIG_1	4	+	704	5	incomplete-splice_match	ALB	ENST00000415165	1483	11	771	8	internal_fragment	FALSE	canonical	0	0	547	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	102	521	40	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4401_CONTIG_1	12	-	1450	16	full-splice_match	NAP1L1	ENST00000393263	1896	16	-23	469	multi-exon	FALSE	canonical	0	0	123	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.234	0.766	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3901_CONTIG_1	4	+	1703	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	12	172	multi-exon	FALSE	canonical	0	0	1344	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7951_CONTIG_1	3	-	816	3	novel_not_in_catalog	BCHE	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	49	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6929_CONTIG_1	12	+	762	4	full-splice_match	LYZ	ENST00000261267	1530	4	40	728	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5712_CONTIG_1	1	-	832	9	novel_not_in_catalog	TCEA3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	144	2	NA	0	0	TRUE	NA	NA	0	C	coding	220	660	76	735	25	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_862_CONTIG_1	2	+	2453	3	novel_in_catalog	FAM228B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	188	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7883_CONTIG_1	22	-	1291	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	3	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	27	1235	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7307_CONTIG_1	4	-	989	5	incomplete-splice_match	ADH1C	ENST00000515683	1740	9	714	37	5prime_fragment	FALSE	canonical	0	0	205	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	266	763	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6344_CONTIG_1	2	+	511	2	genic_intron	novelGene_826	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2390_CONTIG_1	3	+	2194	17	full-splice_match	TF	ENST00000402696	2968	17	437	337	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_248_CONTIG_1	19	-	1759	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	5	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2184_CONTIG_1	4	+	2040	15	full-splice_match	ALB	ENST00000295897	2263	15	50	173	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	55	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2263_CONTIG_1	1	+	922	2	full-splice_match	APCS	ENST00000255040	926	2	1	3	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	C	coding	223	669	97	765	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6922_CONTIG_1	4	+	1955	15	full-splice_match	ALB	ENST00000295897	2263	15	50	258	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5637_CONTIG_1	4	-	1384	8	full-splice_match	ADH6	ENST00000237653	1691	8	294	13	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	368	1104	92	1195	40	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5067_CONTIG_1	10	-	425	14	genic_intron	novelGene_542	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	58	2	NA	12	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.308	0.692	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_845_CONTIG_1	1	-	978	8	novel_not_in_catalog	FCN3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	97	2	NA	1	0	TRUE	NA	NA	0	C	coding	289	867	7	873	35	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7465_CONTIG_1	1	+	1314	10	novel_not_in_catalog	CAP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	907	2	NA	2	0	TRUE	NA	NA	0	A	coding	304	912	55	966	55	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5153_CONTIG_1	4	-	2088	7	novel_in_catalog	FGG	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	164	492	1407	1898	35	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7981_CONTIG_1	11	+	509	4	full-splice_match	APOC3	ENST00000227667	550	4	15	26	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5547_CONTIG_1	4	+	2302	8	full-splice_match	FGB	ENST00000302068	1975	8	55	-382	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	90	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8450_CONTIG_1	9	-	2140	18	full-splice_match	KIAA0020	ENST00000397885	2321	18	146	35	multi-exon	FALSE	canonical	0	0	51	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3571_CONTIG_1	11	+	934	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	54	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8236_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8636_CONTIG_1	7	+	1142	3	novel_in_catalog	PCOLCE	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1036	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8426_CONTIG_1	5	-	2046	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	10	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.278	0.722	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2383_CONTIG_1	10	+	1628	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	2	37	multi-exon	FALSE	canonical	0	0	1328	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	32	1510	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6261_CONTIG_1	1	-	1347	5	full-splice_match	TAGLN2	ENST00000368097	1604	5	222	35	multi-exon	FALSE	canonical	0	0	61	2	NA	0	0	FALSE	NA	NA	0	C	coding	199	597	90	686	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8014_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	50	158	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5934_CONTIG_1	Y	+	463	5	fusion	TTTY15_USP9Y	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	307	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3969_CONTIG_1	1	-	475	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	3	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3111_CONTIG_1	4	-	1664	13	full-splice_match	GC	ENST00000273951	1972	13	283	25	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	62	1483	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2846_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	441	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	48	1022	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4090_CONTIG_1	11	+	532	4	full-splice_match	APOC3	ENST00000227667	550	4	15	3	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7537_CONTIG_1	14	+	1220	5	novel_not_in_catalog	SERPINA3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1109	2	NA	0	0	TRUE	NA	NA	0	C	coding	385	1155	7	1161	10	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1536_CONTIG_1	17	-	1309	8	novel_not_in_catalog	VTN	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	167	2	NA	0	0	TRUE	NA	NA	0	C	coding	371	1113	104	1216	25	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2158_CONTIG_1	1	-	764	6	novel_not_in_catalog	FMO5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	B	coding	172	516	91	606	25	0.598	0.402	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6827_CONTIG_1	11	-	2121	3	novel_not_in_catalog	PLA2G16	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	455	2	NA	2	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.922	0.078	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6550_CONTIG_1	5	-	1968	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	88	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2599_CONTIG_1	3	+	1037	8	full-splice_match	EXOSC7	ENST00000265564	1055	8	14	4	multi-exon	FALSE	canonical	0	0	805	2	NA	0	0	FALSE	NA	NA	0	C	coding	291	873	35	907	5	0.224	0.776	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3460_CONTIG_1	17	-	424	5	novel_not_in_catalog	RPL26	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	37	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4869_CONTIG_1	X	-	449	4	incomplete-splice_match	AP1S2	ENST00000329235	2237	5	398	1390	5prime_fragment	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_392_CONTIG_1	17	-	1030	7	full-splice_match	PHB	ENST00000300408	1832	7	0	802	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	272	816	74	889	35	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_44_CONTIG_1	7	-	987	3	full-splice_match	CYCS	ENST00000305786	4098	3	95	3016	multi-exon	FALSE	canonical	0	0	67	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2962_CONTIG_1	16	+	415	5	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	289	2	NA	0	0	TRUE	NA	NA	0	C	coding	129	387	28	414	10	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3145_CONTIG_1	9	+	577	5	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	B	coding	180	540	37	576	40	0.542	0.458	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8203_CONTIG_1	1	+	545	4	full-splice_match	CAMTA1	ENST00000473578	567	4	-26	48	multi-exon	FALSE	canonical	0	0	311	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_607_CONTIG_1	4	-	1489	10	novel_in_catalog	FGG	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	50	2	NA	0	0	FALSE	NA	NA	0	C	coding	318	954	330	1283	30	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3727_CONTIG_1	9	+	1883	14	novel_not_in_catalog	PMPCA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1443	2	NA	0	0	TRUE	NA	NA	0	B	coding	491	1473	16	1488	25	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1465_CONTIG_1	2	+	1070	6	novel_in_catalog	LRRFIP1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	589	2	NA	0	0	FALSE	NA	NA	0	B	coding	219	657	203	859	95	0.6	0.4	NEG	TRUE	Artifact
SAMPLE_1_MOLECULE_122_CONTIG_1	6	-	1725	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	22	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	60	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3298_CONTIG_1	3	-	648	4	full-splice_match	RPL29	ENST00000294189	723	4	47	28	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	159	477	48	524	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7309_CONTIG_1	16	+	1083	3	full-splice_match	HP	ENST00000566821	3024	3	1910	31	multi-exon	FALSE	canonical	0	0	171	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	264	947	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4702_CONTIG_1	11	+	1744	12	novel_not_in_catalog	CAT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1443	2	NA	2	0	TRUE	NA	NA	0	C	coding	472	1416	40	1455	70	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3215_CONTIG_1	19	-	1761	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	3	multi-exon	FALSE	canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	15	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_266_CONTIG_1	11	-	1500	10	full-splice_match	HPX	ENST00000265983	1652	10	74	78	multi-exon	FALSE	canonical	0	0	110	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	28	1413	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5938_CONTIG_1	11	-	397	2	full-splice_match	POLR2L	ENST00000322028	892	2	12	483	multi-exon	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7056_CONTIG_1	8	-	1631	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1100	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5728_CONTIG_1	4	+	1580	8	full-splice_match	FGB	ENST00000302068	1975	8	57	338	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8194_CONTIG_1	1	-	463	4	full-splice_match	APOA2	ENST00000367990	474	4	0	11	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5512_CONTIG_1	19	-	918	9	novel_in_catalog	C3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	B	coding	280	840	32	871	10	0.692	0.308	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8355_CONTIG_1	11	-	909	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	291	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_729_CONTIG_1	19	+	720	5	full-splice_match	CRB3	ENST00000356762	733	5	-10	23	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	A	coding	123	369	173	541	40	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3293_CONTIG_1	20	+	833	2	full-splice_match	ID1	ENST00000376112	994	2	6	155	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	155	465	100	564	40	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4236_CONTIG_1	9	+	752	6	full-splice_match	ORM1	ENST00000259396	802	6	42	8	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1440_CONTIG_1	11	-	1430	11	novel_not_in_catalog	HPX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	107	2	NA	0	0	TRUE	NA	NA	0	C	coding	402	1206	25	1230	40	0.952	0.048	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_903_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1468_CONTIG_1	19	+	866	4	full-splice_match	FTL	ENST00000331825	878	4	8	4	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1448_CONTIG_1	4	+	1892	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	50	321	3prime_fragment	FALSE	canonical	0	0	1824	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2044_CONTIG_1	19	+	2388	12	novel_not_in_catalog	HPN	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	2367	2	NA	0	0	TRUE	NA	NA	0	B	coding	114	342	757	1098	20	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5897_CONTIG_1	7	-	322	3	novel_not_in_catalog	ICA1	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	57	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6163_CONTIG_1	4	+	1941	15	full-splice_match	ALB	ENST00000295897	2263	15	50	272	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5015_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	49	160	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6735_CONTIG_1	4	+	1811	13	incomplete-splice_match	ALB	ENST00000295897	2263	15	293	159	internal_fragment	FALSE	canonical	0	0	1649	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	127	1623	35	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7451_CONTIG_1	17	-	1967	3	incomplete-splice_match	SLC39A11	ENST00000255559	2737	10	765	5	5prime_fragment	FALSE	canonical	0	0	99	2	NA	2	0	FALSE	NA	NA	0	A	coding	72	216	119	334	15	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_265_CONTIG_1	11	+	1371	6	incomplete-splice_match	SERPING1	ENST00000378324	1751	7	375	5	internal_fragment	FALSE	canonical	0	0	856	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	85	1107	10	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7377_CONTIG_1	4	+	1502	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	501	260	internal_fragment	FALSE	canonical	0	0	1441	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	27	1415	25	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4837_CONTIG_1	12	-	1659	8	full-splice_match	KRT8	ENST00000293308	1777	8	15	103	multi-exon	FALSE	canonical	0	0	400	2	NA	0	0	FALSE	NA	NA	0	C	coding	483	1449	77	1525	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5169_CONTIG_1	11	+	1284	6	incomplete-splice_match	SERPING1	ENST00000378323	1733	8	385	64	internal_fragment	FALSE	canonical	0	0	936	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	165	1187	5	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3636_CONTIG_1	18	-	739	5	full-splice_match	CYB5A	ENST00000340533	834	5	81	14	multi-exon	FALSE	canonical	0	0	189	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	61	462	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_844_CONTIG_1	15	-	2300	9	full-splice_match	GATM	ENST00000396659	2597	9	249	48	multi-exon	FALSE	canonical	0	0	160	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2569_CONTIG_1	17	-	1497	8	full-splice_match	VTN	ENST00000226218	2149	8	515	137	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	105	1496	10	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3188_CONTIG_1	11	+	654	5	full-splice_match	MRPL23	ENST00000397298	736	5	54	28	multi-exon	FALSE	canonical	0	0	328	2	NA	0	0	FALSE	NA	NA	0	C	coding	153	459	32	490	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3662_CONTIG_1	10	-	887	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	190	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8730_CONTIG_1	17	+	1251	4	full-splice_match	EIF1	ENST00000469257	2330	4	-8	1087	multi-exon	FALSE	canonical	0	0	451	2	NA	0	0	FALSE	NA	NA	0	C	coding	113	339	155	493	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1532_CONTIG_1	3	+	1669	10	novel_not_in_catalog	ALAS1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1396	2	NA	1	0	TRUE	NA	NA	0	C	coding	475	1425	130	1554	40	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2347_CONTIG_1	4	+	1096	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	832	3prime_fragment	FALSE	canonical	0	0	884	2	NA	0	0	FALSE	NA	NA	0	C	coding	351	1053	42	1094	50	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_95_CONTIG_1	19	-	848	5	novel_not_in_catalog	EEF2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	72	2	NA	0	0	TRUE	NA	NA	0	B	coding	118	354	238	591	30	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2588_CONTIG_1	17	+	311	4	novel_in_catalog	SLC47A1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	215	2	NA	0	0	FALSE	NA	NA	0	B	coding	41	123	188	310	20	0.514	0.486	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6531_CONTIG_1	3	+	1807	3	novel_in_catalog	FNDC3B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	294	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	80	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4814_CONTIG_1	9	-	797	6	full-splice_match	RPS6	ENST00000380394	1387	6	18	572	multi-exon	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	42	788	55	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2191_CONTIG_1	4	+	2017	15	full-splice_match	ALB	ENST00000295897	2263	15	48	198	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3219_CONTIG_1	19	+	1363	11	incomplete-splice_match	PPP2R1A	ENST00000322088	3281	15	31	1887	3prime_fragment	FALSE	canonical	0	0	1329	2	NA	1	0	FALSE	NA	NA	0	B	coding	445	1335	28	1362	5	0.658	0.342	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6994_CONTIG_1	19	-	1607	8	full-splice_match	A1BG	ENST00000263100	1722	8	32	83	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	495	1485	31	1515	0	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3208_CONTIG_1	3	+	1926	7	full-splice_match	HRG	ENST00000232003	2015	7	60	29	multi-exon	FALSE	canonical	0	0	761	2	NA	0	0	FALSE	NA	NA	0	C	coding	525	1575	21	1595	50	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1042_CONTIG_1	12	+	2460	7	full-splice_match	NR4A1	ENST00000394825	2518	7	32	26	multi-exon	FALSE	canonical	0	0	1672	2	NA	0	0	FALSE	NA	NA	0	C	coding	598	1794	133	1926	55	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8299_CONTIG_1	15	+	1662	3	novel_not_in_catalog	RP11-1000B6.3	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	canonical	0	0	364	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_428_CONTIG_1	12	-	1331	10	full-splice_match	PHB2	ENST00000535923	1515	10	162	22	multi-exon	FALSE	canonical	0	0	247	2	NA	0	0	FALSE	NA	NA	0	C	coding	299	897	121	1017	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4522_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	50	167	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6434_CONTIG_1	6	-	1700	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	557	46	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	63	1448	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6821_CONTIG_1	11	-	815	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	84	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	259	777	39	815	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8745_CONTIG_1	X	-	1858	12	full-splice_match	RBBP7	ENST00000380087	2333	12	157	318	multi-exon	FALSE	canonical	0	0	220	2	NA	0	0	FALSE	NA	NA	0	C	coding	425	1275	205	1479	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3758_CONTIG_1	8	-	938	7	incomplete-splice_match	NAPRT1	ENST00000426292	1654	13	13	703	internal_fragment	TRUE	canonical	0	0	238	2	NA	0	0	FALSE	NA	NA	0	A	coding	308	924	13	936	10	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2507_CONTIG_1	18	+	582	4	full-splice_match	TTR	ENST00000237014	957	4	151	224	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	55	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8549_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5489_CONTIG_1	5	-	1883	5	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	24	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3178_CONTIG_1	15	+	593	4	full-splice_match	B2M	ENST00000558401	1715	4	36	1086	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1183_CONTIG_1	17	-	1625	8	full-splice_match	VTN	ENST00000226218	2149	8	515	9	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5352_CONTIG_1	14	+	373	4	full-splice_match	SLIRP	ENST00000557342	408	4	32	3	multi-exon	FALSE	canonical	0	0	273	2	NA	0	0	FALSE	NA	NA	0	A	coding	109	327	10	336	25	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1729_CONTIG_1	6	-	1169	6	full-splice_match	HLA-DRB1	ENST00000360004	1229	6	55	5	multi-exon	FALSE	canonical	0	0	151	2	NA	0	0	FALSE	NA	NA	0	C	coding	266	798	52	849	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5800_CONTIG_1	10	-	1827	5	full-splice_match	IDI1	ENST00000381344	2301	5	284	190	multi-exon	TRUE	canonical	0	0	23	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2054_CONTIG_1	8	-	1635	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1096	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	50	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3572_CONTIG_1	3	-	961	2	novel_in_catalog	LEPREL1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	566	2	NA	0	0	FALSE	NA	NA	0	A	coding	237	711	87	797	70	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3068_CONTIG_1	4	+	1878	8	full-splice_match	FGB	ENST00000302068	1975	8	56	41	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1345_CONTIG_1	19	+	861	4	full-splice_match	FTL	ENST00000331825	878	4	8	9	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1312_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	50	157	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5482_CONTIG_1	2	+	447	5	novel_in_catalog	PTMA	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	399	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8010_CONTIG_1	5	-	1264	7	full-splice_match	MOCS2	ENST00000450852	1337	7	21	52	multi-exon	FALSE	canonical	0	0	46	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.234	0.766	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4349_CONTIG_1	11	-	1522	10	full-splice_match	HPX	ENST00000265983	1652	10	77	53	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1048_CONTIG_1	12	-	1389	14	novel_not_in_catalog	HPD	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	39	2	NA	1	0	FALSE	NA	NA	0	C	coding	384	1152	37	1188	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7962_CONTIG_1	10	+	1797	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	63	multi-exon	FALSE	canonical	0	0	1316	2	NA	1	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	40	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5816_CONTIG_1	1	-	478	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	0	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6943_CONTIG_1	17	+	213	5	genic_intron	novelGene_283	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7001_CONTIG_1	11	-	1554	10	full-splice_match	HPX	ENST00000265983	1652	10	74	24	multi-exon	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	28	1413	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3546_CONTIG_1	1	+	1529	9	novel_in_catalog	CFH	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1280	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.596	0.404	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3434_CONTIG_1	1	-	1245	2	genic_intron	novelGene_890	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	1073	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.414	0.586	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3164_CONTIG_1	4	+	1909	15	full-splice_match	ALB	ENST00000295897	2263	15	50	304	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6538_CONTIG_1	1	-	2056	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-15	387	multi-exon	FALSE	canonical	0	0	169	2	NA	1	0	FALSE	NA	NA	0	C	coding	508	1524	66	1589	20	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1365_CONTIG_1	22	+	519	3	full-splice_match	MIF	ENST00000215754	939	3	413	7	multi-exon	FALSE	canonical	0	0	339	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	59	403	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6673_CONTIG_1	4	-	885	2	antisense	novelGene_AP1AR_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	683	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.292	0.708	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2535_CONTIG_1	15	+	1187	2	genic_intron	novelGene_560	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	21	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4754_CONTIG_1	4	+	2002	15	full-splice_match	ALB	ENST00000295897	2263	15	50	211	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5571_CONTIG_1	14	+	903	4	incomplete-splice_match	SERPINA3	ENST00000393080	1581	5	682	-4	internal_fragment	FALSE	canonical	0	0	454	2	NA	0	0	FALSE	NA	NA	0	C	coding	205	615	41	655	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5908_CONTIG_1	4	-	340	3	incomplete-splice_match	ADH1C	ENST00000511397	581	5	279	-38	internal_fragment	FALSE	canonical	0	0	37	2	NA	1	0	FALSE	NA	NA	0	C	coding	7	21	318	338	25	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1078_CONTIG_1	9	+	648	6	full-splice_match	ORM1	ENST00000259396	802	6	140	14	multi-exon	FALSE	canonical	0	0	478	2	NA	0	0	FALSE	NA	NA	0	C	coding	73	219	323	541	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8248_CONTIG_1	11	+	1551	4	full-splice_match	RBM4	ENST00000310092	1694	4	78	65	multi-exon	TRUE	canonical	0	0	1173	2	NA	1	0	FALSE	NA	NA	0	A	coding	364	1092	71	1162	25	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8065_CONTIG_1	2	-	1125	6	full-splice_match	CALM2	ENST00000272298	1302	6	90	87	multi-exon	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2142_CONTIG_1	14	+	1529	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	46	multi-exon	FALSE	canonical	0	0	1133	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	5	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_849_CONTIG_1	14	-	1020	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	443	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3526_CONTIG_1	1	-	2008	2	full-splice_match	CRP	ENST00000255030	2015	2	0	7	multi-exon	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	coding	224	672	105	776	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6678_CONTIG_1	7	-	2024	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	84	45	multi-exon	FALSE	canonical	0	0	171	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5596_CONTIG_1	4	+	2047	15	full-splice_match	ALB	ENST00000295897	2263	15	48	168	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7540_CONTIG_1	11	+	532	4	full-splice_match	APOC3	ENST00000227667	550	4	15	3	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6295_CONTIG_1	5	-	2000	14	full-splice_match	F12	ENST00000253496	2049	14	42	7	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	615	1845	8	1852	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3417_CONTIG_1	19	+	482	4	full-splice_match	RPS15	ENST00000586686	599	4	18	99	multi-exon	FALSE	canonical	0	0	345	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	22	456	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4049_CONTIG_1	12	-	1648	8	novel_not_in_catalog	SDS	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	128	1150	20	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1478_CONTIG_1	4	+	1992	15	full-splice_match	ALB	ENST00000295897	2263	15	50	221	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4737_CONTIG_1	7	-	1982	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	171	0	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7274_CONTIG_1	10	-	351	3	incomplete-splice_match	RBP4	ENST00000371469	814	6	133	330	internal_fragment	FALSE	canonical	0	0	137	2	NA	0	0	FALSE	NA	NA	0	C	coding	110	330	22	351	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2212_CONTIG_1	7	+	1688	2	full-splice_match	MIOS	ENST00000433635	602	2	-11	-1075	multi-exon	FALSE	canonical	0	0	123	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5528_CONTIG_1	3	+	1556	12	incomplete-splice_match	ITIH1	ENST00000537050	2486	18	919	11	internal_fragment	FALSE	canonical	0	0	1287	2	NA	1	1	FALSE	NA	NA	0	C	coding	465	1395	20	1414	15	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1328_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2908_CONTIG_1	11	-	629	4	full-splice_match	SAA4	ENST00000278222	727	4	87	11	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	95	484	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3742_CONTIG_1	15	+	907	4	full-splice_match	B2M	ENST00000558401	1715	4	36	772	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7244_CONTIG_1	19	+	854	4	full-splice_match	FTL	ENST00000331825	878	4	8	16	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4328_CONTIG_1	4	+	1578	8	full-splice_match	FGB	ENST00000302068	1975	8	63	334	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	1	1473	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3085_CONTIG_1	11	-	962	8	novel_not_in_catalog	HPX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	103	2	NA	0	0	TRUE	NA	NA	0	C	coding	263	789	21	809	30	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_70_CONTIG_1	4	+	400	2	incomplete-splice_match	FGB	ENST00000509493	1164	6	728	36	internal_fragment	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	C	coding	108	324	39	362	35	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4548_CONTIG_1	4	+	1567	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	513	183	internal_fragment	FALSE	canonical	0	0	1429	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	15	1403	65	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1029_CONTIG_1	6	+	1731	15	incomplete-splice_match	CFB	ENST00000425368	2862	18	1129	2	internal_fragment	FALSE	canonical	0	0	1523	2	NA	0	0	FALSE	NA	NA	0	C	coding	542	1626	51	1676	15	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3583_CONTIG_1	2	+	1549	5	incomplete-splice_match	CPS1	ENST00000451903	4770	28	3191	30	internal_fragment	FALSE	canonical	0	0	358	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.478	0.522	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7319_CONTIG_1	17	-	1156	8	full-splice_match	APOH	ENST00000205948	1176	8	18	2	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5275_CONTIG_1	4	+	1175	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1037	2	NA	0	0	TRUE	NA	NA	0	C	coding	140	420	592	1011	65	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6367_CONTIG_1	4	+	1564	8	full-splice_match	FGB	ENST00000302068	1975	8	61	350	multi-exon	FALSE	canonical	0	0	1246	2	NA	2	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	35	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1369_CONTIG_1	1	-	475	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	3	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5693_CONTIG_1	1	-	449	4	full-splice_match	APOA2	ENST00000367990	474	4	0	25	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2775_CONTIG_1	19	+	1107	4	full-splice_match	APOE	ENST00000252486	1208	4	42	59	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4284_CONTIG_1	5	+	1290	11	full-splice_match	NPM1	ENST00000296930	1758	11	202	266	multi-exon	FALSE	canonical	0	0	945	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6296_CONTIG_1	12	-	1144	2	full-splice_match	TRIAP1	ENST00000546954	1182	2	31	7	multi-exon	FALSE	canonical	0	0	156	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6284_CONTIG_1	7	+	1136	7	full-splice_match	GSTK1	ENST00000479303	1185	7	16	33	multi-exon	FALSE	canonical	0	0	841	2	NA	0	0	FALSE	NA	NA	0	C	coding	282	846	43	888	50	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6355_CONTIG_1	11	-	1499	4	novel_not_in_catalog	CPSF7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	86	2	NA	1	0	TRUE	NA	NA	0	A	coding	110	330	142	471	25	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2722_CONTIG_1	14	-	1384	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	20	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1354_CONTIG_1	9	+	767	2	intergenic	novelGene_246	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	422	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6936_CONTIG_1	4	+	1694	13	incomplete-splice_match	ALB	ENST00000295897	2263	15	335	234	internal_fragment	FALSE	canonical	0	0	1607	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	85	1581	50	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5761_CONTIG_1	4	+	1950	15	full-splice_match	ALB	ENST00000295897	2263	15	49	264	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	15	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2218_CONTIG_1	18	+	603	4	full-splice_match	TTR	ENST00000237014	957	4	151	203	multi-exon	FALSE	canonical	0	0	362	2	NA	1	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6145_CONTIG_1	2	+	1928	10	full-splice_match	PPP1R7	ENST00000234038	2386	10	458	0	multi-exon	FALSE	canonical	0	0	922	2	NA	0	0	FALSE	NA	NA	0	A	coding	360	1080	17	1096	25	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_315_CONTIG_1	17	+	679	2	incomplete-splice_match	GAA	ENST00000573556	756	5	679	-602	internal_fragment	FALSE	canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6574_CONTIG_1	9	-	1078	3	full-splice_match	BAAT	ENST00000395051	2252	3	295	879	multi-exon	FALSE	canonical	0	0	242	2	NA	0	0	FALSE	NA	NA	0	C	coding	343	1029	2	1030	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7543_CONTIG_1	19	+	2012	6	full-splice_match	EGLN2	ENST00000303961	2102	6	14	76	multi-exon	FALSE	canonical	0	0	1464	2	NA	0	0	FALSE	NA	NA	0	C	coding	374	1122	396	1517	35	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1003_CONTIG_1	19	-	1215	4	novel_not_in_catalog	SLC27A5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	725	2	NA	0	0	TRUE	NA	NA	0	C	coding	301	903	38	940	40	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2844_CONTIG_1	7	+	1263	6	full-splice_match	INSIG1	ENST00000340368	3010	6	104	1643	multi-exon	FALSE	canonical	0	0	911	2	NA	0	0	FALSE	NA	NA	0	C	coding	241	723	216	938	40	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3088_CONTIG_1	6	-	889	6	full-splice_match	PSMB1	ENST00000262193	928	6	34	5	multi-exon	TRUE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	A	coding	140	420	369	788	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2841_CONTIG_1	18	-	1097	2	genic_intron	novelGene_140	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	286	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4176_CONTIG_1	17	-	1623	8	full-splice_match	VTN	ENST00000226218	2149	8	515	11	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1592_CONTIG_1	7	-	2033	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	81	39	multi-exon	FALSE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_957_CONTIG_1	11	-	944	6	novel_in_catalog	HPX	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	110	2	NA	1	0	FALSE	NA	NA	0	C	coding	255	765	28	792	25	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4809_CONTIG_1	5	-	1463	17	incomplete-splice_match	ANXA6	ENST00000356496	2441	25	-47	1025	internal_fragment	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	B	coding	439	1317	146	1462	40	0.666	0.334	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4554_CONTIG_1	16	+	1168	4	full-splice_match	HPR	ENST00000228226	1158	4	116	-126	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	356	1039	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6494_CONTIG_1	4	-	1557	10	full-splice_match	FGG	ENST00000404648	1760	10	193	10	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8204_CONTIG_1	10	+	371	2	incomplete-splice_match	CYP2E1	ENST00000541261	475	4	182	-78	internal_fragment	FALSE	canonical	0	0	210	2	NA	0	0	FALSE	NA	NA	0	C	coding	112	336	34	369	10	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7043_CONTIG_1	4	-	1459	10	full-splice_match	FGG	ENST00000404648	1760	10	193	108	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	45	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6769_CONTIG_1	10	-	918	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	159	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4909_CONTIG_1	19	-	1574	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	190	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_201_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3192_CONTIG_1	2	-	1239	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	947	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	45	581	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8493_CONTIG_1	2	+	845	3	novel_not_in_catalog	KHK	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	543	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.946	0.054	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1336_CONTIG_1	6	-	2510	7	novel_not_in_catalog	ATP6V1G2-DDX39B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	401	2	NA	0	0	TRUE	NA	NA	0	A	coding	290	870	404	1273	85	0.976	0.024	NEG	TRUE	Artifact
SAMPLE_1_MOLECULE_7048_CONTIG_1	19	-	1756	9	fusion	CYP2A7_CYP2A6	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	A	coding	494	1482	22	1503	15	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7317_CONTIG_1	18	-	729	5	full-splice_match	CYB5A	ENST00000340533	834	5	102	3	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	40	441	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8467_CONTIG_1	17	-	1121	8	full-splice_match	APOH	ENST00000205948	1176	8	7	48	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	345	1035	32	1066	45	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8290_CONTIG_1	7	+	703	5	full-splice_match	PPIA	ENST00000468812	2238	5	1	1534	multi-exon	FALSE	canonical	0	0	406	2	NA	0	0	FALSE	NA	NA	0	C	coding	165	495	45	539	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6914_CONTIG_1	16	-	1917	14	full-splice_match	CES1	ENST00000361503	1835	14	83	-165	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	567	1701	49	1749	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5279_CONTIG_1	10	-	919	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	158	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7328_CONTIG_1	15	+	2003	6	novel_in_catalog	CGNL1	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1910	2	NA	0	0	FALSE	NA	NA	0	B	coding	632	1896	108	2003	25	0.664	0.336	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8066_CONTIG_1	9	-	1543	5	novel_not_in_catalog	POLE3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	119	2	NA	1	0	TRUE	NA	NA	0	A	coding	147	441	54	494	10	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2614_CONTIG_1	9	+	174	2	incomplete-splice_match	TJP2	ENST00000539225	4500	23	2997	1329	internal_fragment	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.474	0.526	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2516_CONTIG_1	5	+	1026	3	incomplete-splice_match	SIMC1	ENST00000332772	1891	7	862	3	internal_fragment	FALSE	canonical	0	0	222	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5268_CONTIG_1	15	+	2003	7	novel_not_in_catalog	CYP1A2	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1943	2	NA	4	0	TRUE	NA	NA	0	C	coding	337	1011	89	1099	45	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4051_CONTIG_1	10	-	2343	10	full-splice_match	LIPA	ENST00000336233	2782	10	283	156	multi-exon	FALSE	canonical	0	0	39	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3390_CONTIG_1	4	+	1044	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	359	80	internal_fragment	FALSE	canonical	0	0	959	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	70	933	50	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5951_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6035_CONTIG_1	3	-	1814	5	incomplete-splice_match	PROS1	ENST00000407433	3335	15	1459	62	5prime_fragment	FALSE	canonical	0	0	32	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.498	0.502	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4332_CONTIG_1	17	-	280	2	full-splice_match	YWHAE	ENST00000489287	465	2	11	174	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7296_CONTIG_1	15	+	958	4	full-splice_match	B2M	ENST00000558401	1715	4	36	721	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2286_CONTIG_1	22	+	1384	3	full-splice_match	XPNPEP3	ENST00000482652	1418	3	9	25	multi-exon	FALSE	canonical	0	0	256	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6472_CONTIG_1	4	+	1173	10	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1017	2	NA	1	0	TRUE	NA	NA	0	C	coding	234	702	40	741	40	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8094_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1173_CONTIG_1	1	-	844	2	genic_intron	novelGene_312	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	659	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.288	0.712	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6315_CONTIG_1	10	-	1898	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	0	25	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6388_CONTIG_1	14	-	663	2	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	30	757	internal_fragment	FALSE	canonical	0	0	650	2	NA	0	0	FALSE	NA	NA	0	C	coding	219	657	5	661	35	0.304	0.696	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5518_CONTIG_1	17	-	299	3	full-splice_match	H3F3B	ENST00000587171	586	3	-2	289	multi-exon	FALSE	canonical	0	0	124	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8307_CONTIG_1	9	-	1261	10	full-splice_match	AMBP	ENST00000265132	1434	10	166	7	multi-exon	FALSE	canonical	0	0	214	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	98	1153	20	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7062_CONTIG_1	17	-	1125	8	full-splice_match	APOH	ENST00000205948	1176	8	16	35	multi-exon	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	coding	345	1035	23	1057	55	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2279_CONTIG_1	9	-	1204	10	full-splice_match	AMBP	ENST00000265132	1434	10	176	54	multi-exon	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	88	1143	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4736_CONTIG_1	4	+	1227	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	197	59	internal_fragment	FALSE	canonical	0	0	1121	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	232	1095	15	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_224_CONTIG_1	10	+	1010	6	incomplete-splice_match	CYP2E1	ENST00000418356	918	7	218	-310	internal_fragment	FALSE	canonical	0	0	668	2	NA	0	0	FALSE	NA	NA	0	C	coding	221	663	188	850	35	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_423_CONTIG_1	16	+	398	3	full-splice_match	MT1E	ENST00000306061	704	3	306	0	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7737_CONTIG_1	16	+	1095	5	full-splice_match	HP	ENST00000398131	1252	5	17	140	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6386_CONTIG_1	4	-	2016	6	novel_not_in_catalog	UGT2B4	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	765	2	NA	2	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6078_CONTIG_1	12	-	767	7	full-splice_match	CCDC53	ENST00000240079	916	7	139	10	multi-exon	FALSE	canonical	0	0	74	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.286	0.714	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3437_CONTIG_1	9	-	1708	8	full-splice_match	PLIN2	ENST00000276914	1972	8	84	180	multi-exon	FALSE	canonical	0	0	74	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	97	1407	45	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_509_CONTIG_1	10	+	1056	6	novel_not_in_catalog	CYP2C9	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	539	2	NA	0	0	TRUE	NA	NA	0	C	coding	231	693	26	718	55	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7314_CONTIG_1	11	-	378	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	521	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	113	339	39	377	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_443_CONTIG_1	X	+	441	4	full-splice_match	USP11	ENST00000480104	697	4	281	-25	multi-exon	FALSE	canonical	0	0	388	2	NA	0	0	FALSE	NA	NA	0	A	coding	118	354	87	440	25	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2764_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6554_CONTIG_1	3	+	1898	13	novel_not_in_catalog	AP2M1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1867	2	NA	3	2	TRUE	NA	NA	0	A	coding	251	753	647	1399	30	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7644_CONTIG_1	4	-	1313	7	incomplete-splice_match	ADH1C	ENST00000515683	1740	9	483	-56	5prime_fragment	FALSE	canonical	0	0	128	2	NA	5	0	FALSE	NA	NA	0	C	coding	166	498	497	994	30	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2957_CONTIG_1	11	-	1571	10	full-splice_match	HPX	ENST00000265983	1652	10	74	7	multi-exon	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	28	1413	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7473_CONTIG_1	6	-	1933	4	incomplete-splice_match	ALDH8A1	ENST00000265605	2558	7	611	14	5prime_fragment	FALSE	canonical	0	0	50	2	NA	1	0	FALSE	NA	NA	0	B	coding	299	897	23	919	30	0.496	0.504	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3862_CONTIG_1	4	-	1514	10	full-splice_match	FGG	ENST00000404648	1760	10	193	53	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3770_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	48	161	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1513_CONTIG_1	4	-	506	2	incomplete-splice_match	ADH1C	ENST00000505942	564	5	-384	442	internal_fragment	FALSE	canonical	0	0	471	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8523_CONTIG_1	10	-	925	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	152	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3634_CONTIG_1	9	+	976	5	novel_in_catalog	ORM1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	788	2	NA	0	0	FALSE	NA	NA	0	C	coding	86	258	37	294	15	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1690_CONTIG_1	13	+	1554	7	novel_not_in_catalog	ITM2B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	866	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3311_CONTIG_1	14	+	1285	4	incomplete-splice_match	SERPINA3	ENST00000393080	1581	5	289	7	internal_fragment	FALSE	canonical	0	0	847	2	NA	0	0	FALSE	NA	NA	0	C	coding	287	861	188	1048	10	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1239_CONTIG_1	5	+	406	3	full-splice_match	UQCRQ	ENST00000378670	839	3	79	354	multi-exon	FALSE	canonical	0	0	216	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6157_CONTIG_1	19	-	1728	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	36	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7222_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	6	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3042_CONTIG_1	15	+	916	4	full-splice_match	B2M	ENST00000558401	1715	4	36	763	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7684_CONTIG_1	4	+	358	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	692	433	internal_fragment	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	59	177	181	357	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6829_CONTIG_1	9	-	281	3	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	360	1810	internal_fragment	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7974_CONTIG_1	9	-	753	6	novel_not_in_catalog	SETX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	58	2	NA	2	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	10	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4341_CONTIG_1	12	-	1691	12	incomplete-splice_match	ITPR2	ENST00000381340	10511	57	1277	7543	internal_fragment	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	A	coding	500	1500	191	1690	45	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2706_CONTIG_1	16	-	1813	13	incomplete-splice_match	ACSM2B	ENST00000567001	1988	15	133	42	5prime_fragment	FALSE	canonical	0	0	185	2	NA	0	0	FALSE	NA	NA	0	B	coding	577	1731	9	1739	30	0.666	0.334	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4369_CONTIG_1	9	+	930	8	full-splice_match	STX17	ENST00000259400	2708	8	35	1743	multi-exon	FALSE	canonical	0	0	770	2	NA	0	0	FALSE	NA	NA	0	A	coding	276	828	102	929	60	0.276	0.724	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6109_CONTIG_1	4	+	1578	8	full-splice_match	FGB	ENST00000302068	1975	8	59	338	multi-exon	FALSE	canonical	0	0	1248	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1707_CONTIG_1	4	+	2030	15	full-splice_match	ALB	ENST00000295897	2263	15	50	183	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4738_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5334_CONTIG_1	17	-	1048	3	full-splice_match	P4HB	ENST00000571507	493	3	220	-775	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5521_CONTIG_1	4	+	1941	15	full-splice_match	ALB	ENST00000295897	2263	15	50	272	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7236_CONTIG_1	4	+	2016	15	full-splice_match	ALB	ENST00000295897	2263	15	50	197	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1840_CONTIG_1	X	-	344	3	incomplete-splice_match	LAMP2	ENST00000200639	1867	9	-9	1532	internal_fragment	FALSE	canonical	0	0	210	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_429_CONTIG_1	11	+	2139	12	novel_in_catalog	CAT	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1454	2	NA	2	0	FALSE	NA	NA	0	C	coding	467	1401	117	1517	40	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3098_CONTIG_1	11	+	807	4	full-splice_match	APOC3	ENST00000227667	550	4	15	-272	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5261_CONTIG_1	17	+	1171	5	full-splice_match	SLC9A3R1	ENST00000413388	1285	5	17	97	multi-exon	FALSE	canonical	0	0	439	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	20	625	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1930_CONTIG_1	1	-	1272	8	novel_not_in_catalog	PKLR	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	12	2	NA	0	0	TRUE	NA	NA	0	A	coding	202	606	303	908	25	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_421_CONTIG_1	6	-	1711	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	36	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	40	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2074_CONTIG_1	4	+	1958	15	full-splice_match	ALB	ENST00000295897	2263	15	50	255	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7379_CONTIG_1	22	-	1941	18	full-splice_match	TXNRD2	ENST00000400521	1933	18	-8	0	multi-exon	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	A	coding	519	1557	25	1581	0	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6392_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5277_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2583_CONTIG_1	15	+	469	3	full-splice_match	SERF2	ENST00000339624	506	3	12	25	multi-exon	FALSE	canonical	0	0	134	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3009_CONTIG_1	GL000220.1	+	1551	2	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1069	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6754_CONTIG_1	2	+	1093	3	full-splice_match	ID2	ENST00000396290	1362	3	73	196	multi-exon	FALSE	canonical	0	0	522	2	NA	1	0	FALSE	NA	NA	0	C	coding	134	402	111	512	40	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8267_CONTIG_1	20	+	438	2	novel_in_catalog	PCIF1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	175	2	NA	0	0	FALSE	NA	NA	0	A	coding	79	237	63	299	25	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1487_CONTIG_1	16	+	1031	8	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	847	2	NA	1	0	TRUE	NA	NA	0	C	coding	277	831	28	858	10	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5476_CONTIG_1	12	-	887	8	full-splice_match	CD63	ENST00000257857	1070	8	211	-28	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	coding	238	714	69	782	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4913_CONTIG_1	7	-	398	3	full-splice_match	AZGP1	ENST00000411734	2027	3	-28	1657	multi-exon	FALSE	canonical	0	0	101	2	NA	0	0	FALSE	NA	NA	0	C	coding	121	363	35	397	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2607_CONTIG_1	15	-	768	8	novel_not_in_catalog	ANPEP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	90	2	NA	0	0	TRUE	NA	NA	0	A	coding	185	555	214	768	45	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5366_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6307_CONTIG_1	19	+	738	4	full-splice_match	FTL	ENST00000331825	878	4	8	132	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2113_CONTIG_1	11	+	943	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	45	multi-exon	FALSE	canonical	0	0	472	2	NA	1	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1258_CONTIG_1	4	+	411	4	incomplete-splice_match	ALB	ENST00000415165	1483	11	528	544	internal_fragment	FALSE	canonical	0	0	365	2	NA	0	0	FALSE	NA	NA	0	C	coding	22	66	345	410	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1995_CONTIG_1	4	+	2041	15	full-splice_match	ALB	ENST00000295897	2263	15	48	174	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2282_CONTIG_1	9	-	1234	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	28	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	60	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7688_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	50	167	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7058_CONTIG_1	10	-	958	9	novel_not_in_catalog	AKR1C2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	106	2	NA	0	0	TRUE	NA	NA	0	C	coding	297	891	23	913	45	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_780_CONTIG_1	7	+	524	2	genic_intron	novelGene_459	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	426	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8087_CONTIG_1	4	-	2178	5	full-splice_match	FGA	ENST00000403106	2248	5	22	48	multi-exon	FALSE	canonical	0	0	111	2	NA	1	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	50	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1214_CONTIG_1	7	+	900	7	full-splice_match	TMEM176A	ENST00000004103	1261	7	241	120	multi-exon	FALSE	canonical	0	0	726	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	61	765	20	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1095_CONTIG_1	8	-	297	3	full-splice_match	CLU	ENST00000519472	303	3	-19	25	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1546_CONTIG_1	12	-	1042	8	full-splice_match	RPLP0	ENST00000392514	1218	8	103	73	multi-exon	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	75	1025	25	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8556_CONTIG_1	18	-	1191	4	incomplete-splice_match	ABHD3	ENST00000580981	1836	7	662	-17	5prime_fragment	FALSE	canonical	0	0	123	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5948_CONTIG_1	12	+	1804	9	novel_in_catalog	MRPS35	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	805	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4300_CONTIG_1	3	+	2296	17	full-splice_match	TF	ENST00000402696	2968	17	437	235	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5916_CONTIG_1	4	+	1088	4	incomplete-splice_match	FGB	ENST00000509493	1164	6	375	-299	internal_fragment	FALSE	canonical	0	0	486	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7769_CONTIG_1	4	+	1865	8	full-splice_match	FGB	ENST00000302068	1975	8	59	51	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2163_CONTIG_1	4	-	1533	2	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	691	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6330_CONTIG_1	11	+	899	5	full-splice_match	C11orf58	ENST00000422258	1469	5	22	548	multi-exon	FALSE	canonical	0	0	428	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_986_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	49	166	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	45	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2469_CONTIG_1	12	+	987	7	incomplete-splice_match	HSP90B1	ENST00000299767	2858	18	76	1795	3prime_fragment	FALSE	canonical	0	0	961	2	NA	0	0	FALSE	NA	NA	0	B	coding	293	879	107	985	50	0.656	0.344	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3132_CONTIG_1	6	-	2401	12	full-splice_match	TAP2	ENST00000374897	5684	12	-17	3300	multi-exon	FALSE	canonical	0	0	145	2	NA	1	0	FALSE	NA	NA	0	A	coding	686	2058	150	2207	15	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4612_CONTIG_1	5	-	2051	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	5	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4487_CONTIG_1	4	+	1992	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1895	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	35	0.954	0.046	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4779_CONTIG_1	4	-	1565	10	full-splice_match	FGG	ENST00000404648	1760	10	193	2	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_558_CONTIG_1	19	-	1167	8	novel_not_in_catalog	CYP2A6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	201	2	NA	0	0	TRUE	NA	NA	0	C	coding	382	1146	22	1167	50	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2310_CONTIG_1	8	+	1337	7	novel_in_catalog	INTS10	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	763	2	NA	0	0	FALSE	NA	NA	0	B	coding	279	837	100	936	30	0.626	0.374	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6048_CONTIG_1	1	+	464	4	incomplete-splice_match	CDC73	ENST00000367435	4969	17	1262	3243	internal_fragment	FALSE	canonical	0	0	339	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5459_CONTIG_1	4	+	1014	8	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	902	2	NA	0	0	TRUE	NA	NA	0	C	coding	271	813	158	970	45	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2938_CONTIG_1	7	-	1431	6	novel_in_catalog	HIBADH	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8002_CONTIG_1	4	+	1023	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	905	3prime_fragment	FALSE	canonical	0	0	884	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	42	1022	15	0.21	0.79	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5368_CONTIG_1	11	+	1222	3	genic	FAM99A	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	387	2	NA	0	0	TRUE	NA	NA	0	A	coding	53	159	180	338	15	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6696_CONTIG_1	15	-	463	5	full-splice_match	RPS17	ENST00000330339	595	5	119	13	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	A	coding	135	405	18	422	20	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7005_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	48	204	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4976_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1802_CONTIG_1	4	+	1704	13	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	1542	2	NA	2	0	TRUE	NA	NA	0	C	coding	240	720	100	819	35	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7847_CONTIG_1	9	+	759	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	20	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3982_CONTIG_1	5	+	1659	8	full-splice_match	BHMT2	ENST00000255192	2050	8	50	341	multi-exon	FALSE	canonical	0	0	1026	2	NA	0	0	FALSE	NA	NA	0	C	coding	363	1089	17	1105	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_317_CONTIG_1	1	+	827	4	incomplete-splice_match	CFHR3	ENST00000367425	1645	6	472	346	internal_fragment	FALSE	canonical	0	0	416	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3586_CONTIG_1	7	+	972	6	incomplete-splice_match	C7orf55-LUC7L2	ENST00000354926	2645	10	53	1620	3prime_fragment	FALSE	canonical	0	0	811	2	NA	0	0	FALSE	NA	NA	0	A	coding	223	669	302	970	40	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4001_CONTIG_1	4	+	1646	8	full-splice_match	FGB	ENST00000302068	1975	8	57	272	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3225_CONTIG_1	13	+	1556	16	novel_not_in_catalog	RP11-29G8.3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1328	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.172	0.828	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1788_CONTIG_1	12	+	1335	5	full-splice_match	HSD17B6	ENST00000322165	1512	5	-4	181	multi-exon	FALSE	canonical	0	0	850	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	115	1065	50	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4659_CONTIG_1	4	+	1483	2	novel_not_in_catalog	SORCS2	novel	NA	NA	NA	NA	not any annotated donor/acceptor	TRUE	non_canonical	0	0	387	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7384_CONTIG_1	5	-	1772	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	284	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5391_CONTIG_1	19	+	1080	3	full-splice_match	C19orf66	ENST00000592551	1461	3	231	150	multi-exon	FALSE	canonical	0	0	220	2	NA	0	0	FALSE	NA	NA	0	A	coding	106	318	76	393	10	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7763_CONTIG_1	9	-	691	5	incomplete-splice_match	PLIN2	ENST00000276914	1972	8	82	1199	internal_fragment	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	197	591	99	689	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3471_CONTIG_1	4	+	2007	15	full-splice_match	ALB	ENST00000295897	2263	15	50	206	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2524_CONTIG_1	4	-	1576	6	incomplete-splice_match	ANKRD17	ENST00000330838	7734	33	6067	91	5prime_fragment	FALSE	canonical	0	0	271	2	NA	0	0	FALSE	NA	NA	0	A	coding	321	963	157	1119	40	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2874_CONTIG_1	17	-	1349	8	full-splice_match	GALK1	ENST00000437911	1379	8	30	0	multi-exon	FALSE	canonical	0	0	225	2	NA	0	0	FALSE	NA	NA	0	C	coding	392	1176	61	1236	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7714_CONTIG_1	4	-	1755	9	full-splice_match	ADH1B	ENST00000394887	4059	9	-2	2306	multi-exon	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	71	1195	50	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4792_CONTIG_1	4	+	948	6	incomplete-splice_match	FGB	ENST00000502545	1320	7	-19	391	3prime_fragment	FALSE	canonical	0	0	832	2	NA	0	0	FALSE	NA	NA	0	C	coding	316	948	1	948	35	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6189_CONTIG_1	5	-	1606	5	full-splice_match	AMACR	ENST00000335606	4153	5	58	2489	multi-exon	FALSE	canonical	0	0	278	2	NA	0	0	FALSE	NA	NA	0	A	coding	382	1146	32	1177	15	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_803_CONTIG_1	16	+	1406	7	full-splice_match	HP	ENST00000355906	1443	7	31	6	multi-exon	FALSE	canonical	0	0	469	2	NA	1	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5829_CONTIG_1	11	-	2261	9	full-splice_match	HSPA8	ENST00000534624	2463	9	196	6	multi-exon	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	646	1938	82	2019	25	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6555_CONTIG_1	X	-	873	7	full-splice_match	RPS4X	ENST00000316084	1526	7	82	571	multi-exon	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	C	coding	263	789	24	812	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3154_CONTIG_1	6	-	428	5	incomplete-splice_match	GSTA1	ENST00000334575	1019	7	94	497	internal_fragment	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	63	428	60	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3917_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	48	164	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6215_CONTIG_1	19	+	404	4	full-splice_match	APOC1	ENST00000252491	461	4	44	13	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7664_CONTIG_1	18	-	623	5	incomplete-splice_match	ACAA2	ENST00000285093	2018	10	427	968	internal_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	191	573	50	622	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3891_CONTIG_1	15	+	941	4	full-splice_match	B2M	ENST00000558401	1715	4	40	734	multi-exon	FALSE	canonical	0	0	404	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5205_CONTIG_1	X	-	855	7	novel_not_in_catalog	RPS4X	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	26	2	NA	0	0	TRUE	NA	NA	0	C	coding	262	786	24	809	40	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6621_CONTIG_1	8	-	986	6	full-splice_match	HRSP12	ENST00000254878	1057	6	70	1	multi-exon	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5987_CONTIG_1	12	-	1646	2	full-splice_match	DUSP6	ENST00000547291	1074	2	367	-939	multi-exon	FALSE	canonical	0	0	217	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_433_CONTIG_1	12	+	2220	10	incomplete-splice_match	C1S	ENST00000360817	2635	12	414	1	internal_fragment	FALSE	canonical	0	0	1132	2	NA	0	0	FALSE	NA	NA	0	B	coding	521	1563	364	1926	5	0.698	0.302	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5444_CONTIG_1	19	+	870	4	full-splice_match	FTL	ENST00000331825	878	4	6	2	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	202	726	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2668_CONTIG_1	4	-	1362	2	genic_intron	novelGene_282	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	200	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7186_CONTIG_1	4	+	765	7	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	731	2	NA	0	0	TRUE	NA	NA	0	C	coding	197	591	175	765	55	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7760_CONTIG_1	14	-	1477	5	incomplete-splice_match	NUMB	ENST00000554315	1740	7	186	77	5prime_fragment	FALSE	canonical	0	0	141	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.472	0.528	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1027_CONTIG_1	16	+	1122	3	full-splice_match	HP	ENST00000566821	3024	3	1903	-1	multi-exon	FALSE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	271	954	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1819_CONTIG_1	12	-	2413	17	full-splice_match	ANAPC5	ENST00000541887	2400	17	-23	10	multi-exon	TRUE	canonical	0	0	278	2	NA	1	0	FALSE	NA	NA	0	A	coding	742	2226	72	2297	20	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3532_CONTIG_1	2	-	1326	7	full-splice_match	LAPTM4A	ENST00000175091	1765	7	408	31	multi-exon	FALSE	canonical	0	0	211	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4141_CONTIG_1	6	+	711	6	full-splice_match	RPL10A	ENST00000322203	716	6	-4	9	multi-exon	FALSE	canonical	0	0	514	2	NA	0	0	FALSE	NA	NA	0	C	coding	217	651	32	682	5	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1143_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	48	159	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_173_CONTIG_1	10	+	998	2	full-splice_match	ZNF22	ENST00000298299	2551	2	305	1248	multi-exon	FALSE	canonical	0	0	199	2	NA	0	0	FALSE	NA	NA	0	C	coding	224	672	289	960	80	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6136_CONTIG_1	1	-	1565	8	novel_not_in_catalog	CYP4A11	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	157	2	NA	2	0	TRUE	NA	NA	0	B	coding	220	660	265	924	35	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4313_CONTIG_1	4	+	1968	15	full-splice_match	ALB	ENST00000295897	2263	15	48	247	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2146_CONTIG_1	14	-	359	2	genic_intron	novelGene_534	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	70	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3406_CONTIG_1	4	+	1885	8	full-splice_match	FGB	ENST00000302068	1975	8	55	35	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6254_CONTIG_1	11	-	512	2	full-splice_match	IFITM3	ENST00000399808	808	2	289	7	multi-exon	FALSE	canonical	0	0	197	2	NA	0	0	FALSE	NA	NA	0	C	coding	112	336	12	347	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1384_CONTIG_1	11	-	1458	14	full-splice_match	CHID1	ENST00000436108	1477	14	21	-2	multi-exon	FALSE	canonical	0	0	36	2	NA	4	0	FALSE	NA	NA	0	A	coding	393	1179	184	1362	10	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1873_CONTIG_1	14	-	1188	4	full-splice_match	CNIH1	ENST00000395573	1233	4	50	-5	multi-exon	FALSE	canonical	0	0	95	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4793_CONTIG_1	6	+	1629	2	genic_intron	novelGene_830	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	108	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5735_CONTIG_1	10	-	496	7	incomplete-splice_match	SFXN4	ENST00000461438	1029	15	485	48	5prime_fragment	FALSE	canonical	0	0	15	2	NA	0	0	FALSE	NA	NA	0	A	coding	131	393	103	495	40	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3420_CONTIG_1	7	-	1141	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	40	multi-exon	FALSE	canonical	0	0	87	2	NA	1	0	FALSE	NA	NA	0	C	coding	295	885	21	905	50	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2528_CONTIG_1	4	+	1774	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	152	3prime_fragment	FALSE	canonical	0	0	1691	2	NA	0	0	FALSE	NA	NA	0	C	coding	578	1734	40	1773	30	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_974_CONTIG_1	X	+	967	3	incomplete-splice_match	USP9X	ENST00000378308	8371	45	-204	7608	3prime_fragment	FALSE	canonical	0	0	933	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.3	0.7	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3860_CONTIG_1	3	+	1424	6	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	729	2	NA	0	0	TRUE	NA	NA	0	C	coding	320	960	81	1040	20	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3136_CONTIG_1	15	+	481	3	full-splice_match	SERF2	ENST00000249786	1537	3	489	567	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4075_CONTIG_1	22	+	546	3	full-splice_match	MIF	ENST00000215754	939	3	389	4	multi-exon	FALSE	canonical	0	0	363	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	83	427	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8372_CONTIG_1	4	-	1625	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	42	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	45	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_624_CONTIG_1	12	-	620	4	incomplete-splice_match	RPLP0	ENST00000549098	1106	8	449	37	5prime_fragment	FALSE	canonical	0	0	103	2	NA	0	0	FALSE	NA	NA	0	C	coding	141	423	167	589	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8406_CONTIG_1	14	-	1315	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	219	88	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	47	1300	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4605_CONTIG_1	4	-	1563	10	full-splice_match	FGG	ENST00000404648	1760	10	193	4	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1674_CONTIG_1	3	+	1249	2	genic_intron	novelGene_166	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	476	2	NA	1	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7468_CONTIG_1	4	-	1523	10	full-splice_match	FGG	ENST00000404648	1760	10	193	44	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3067_CONTIG_1	18	+	610	4	full-splice_match	TTR	ENST00000237014	957	4	151	196	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8129_CONTIG_1	14	-	1372	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	32	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_726_CONTIG_1	1	-	1594	14	full-splice_match	ILF2	ENST00000361891	1659	14	61	4	multi-exon	FALSE	canonical	0	0	70	2	NA	0	0	FALSE	NA	NA	0	A	coding	390	1170	66	1235	5	0.222	0.778	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8043_CONTIG_1	10	-	1431	17	full-splice_match	BLNK	ENST00000224337	1784	17	22	331	multi-exon	FALSE	canonical	0	0	167	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	121	1431	55	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_771_CONTIG_1	8	-	383	3	incomplete-splice_match	CLU	ENST00000522098	850	4	449	18	internal_fragment	FALSE	canonical	0	0	72	2	NA	0	0	FALSE	NA	NA	0	C	coding	118	354	30	383	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4805_CONTIG_1	9	-	1478	4	novel_not_in_catalog	BAAT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	527	2	NA	1	0	TRUE	NA	NA	0	C	coding	418	1254	62	1315	35	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1803_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	441	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	48	1022	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2017_CONTIG_1	4	+	1586	8	full-splice_match	FGB	ENST00000302068	1975	8	55	334	multi-exon	FALSE	canonical	0	0	1252	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7097_CONTIG_1	5	+	1684	2	incomplete-splice_match	BHMT2	ENST00000255192	2050	8	969	-603	internal_fragment	FALSE	canonical	0	0	107	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2271_CONTIG_1	3	+	1403	7	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	779	2	NA	0	0	TRUE	NA	NA	0	C	coding	322	966	87	1052	30	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2366_CONTIG_1	1	+	900	2	full-splice_match	APCS	ENST00000255040	926	2	1	25	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3597_CONTIG_1	10	+	1811	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	49	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3964_CONTIG_1	17	+	661	6	full-splice_match	RPL19	ENST00000225430	732	6	31	40	multi-exon	FALSE	canonical	0	0	498	2	NA	0	0	FALSE	NA	NA	0	C	coding	196	588	32	619	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4463_CONTIG_1	X	+	1094	2	full-splice_match	RAB9A	ENST00000243325	737	2	-56	-301	multi-exon	FALSE	canonical	0	0	159	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	186	788	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5106_CONTIG_1	15	-	1234	3	incomplete-splice_match	GATM	ENST00000396659	2597	9	1358	5	5prime_fragment	FALSE	canonical	0	0	24	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3810_CONTIG_1	1	-	1476	8	full-splice_match	TMEM59	ENST00000234831	1696	8	213	7	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6002_CONTIG_1	16	+	1413	7	full-splice_match	HP	ENST00000355906	1443	7	28	2	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	31	1248	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1387_CONTIG_1	10	-	1423	6	full-splice_match	BNIP3	ENST00000368636	1160	6	-25	-238	multi-exon	FALSE	canonical	0	0	196	2	NA	1	0	FALSE	NA	NA	0	C	coding	186	558	175	732	15	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1679_CONTIG_1	11	-	1701	6	full-splice_match	LYVE1	ENST00000256178	3273	6	13	1559	multi-exon	FALSE	canonical	0	0	231	2	NA	0	0	FALSE	NA	NA	0	A	coding	322	966	147	1112	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_725_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8613_CONTIG_1	15	-	1971	9	full-splice_match	GATM	ENST00000396659	2597	9	249	377	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	92	1360	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2277_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2638_CONTIG_1	11	+	1442	12	novel_not_in_catalog	F2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1250	2	NA	0	0	TRUE	NA	NA	0	C	coding	456	1368	24	1391	25	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_448_CONTIG_1	9	+	352	2	full-splice_match	GRHPR	ENST00000497693	4762	2	4306	104	multi-exon	FALSE	canonical	0	0	127	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7834_CONTIG_1	1	+	383	2	full-splice_match	APCS	ENST00000255040	926	2	0	543	multi-exon	FALSE	canonical	0	0	161	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3163_CONTIG_1	12	+	1978	8	full-splice_match	RAP1B	ENST00000250559	2129	8	66	85	multi-exon	FALSE	canonical	0	0	750	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7166_CONTIG_1	4	+	1837	8	full-splice_match	FGB	ENST00000302068	1975	8	59	79	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_142_CONTIG_1	6	+	489	6	full-splice_match	RPS12	ENST00000230050	631	6	142	0	multi-exon	FALSE	canonical	0	0	404	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	69	464	5	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_815_CONTIG_1	4	-	1599	9	full-splice_match	ADH1B	ENST00000394887	4059	9	20	2440	multi-exon	FALSE	canonical	0	0	66	2	NA	2	0	FALSE	NA	NA	0	C	coding	375	1125	49	1173	15	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8475_CONTIG_1	5	-	2052	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	4	multi-exon	FALSE	canonical	0	0	57	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7464_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	447	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1669_CONTIG_1	14	-	391	4	full-splice_match	ERH	ENST00000557016	1116	4	343	382	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	104	312	52	363	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5720_CONTIG_1	19	+	1161	4	full-splice_match	APOE	ENST00000252486	1208	4	44	3	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1279_CONTIG_1	7	+	720	3	full-splice_match	IGFBP1	ENST00000468955	1369	3	169	480	multi-exon	FALSE	canonical	0	0	506	2	NA	0	0	FALSE	NA	NA	0	C	coding	155	465	171	635	40	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5003_CONTIG_1	4	+	1674	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	422	167	internal_fragment	FALSE	canonical	0	0	1520	2	NA	1	0	FALSE	NA	NA	0	C	coding	463	1389	106	1494	45	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6055_CONTIG_1	12	-	973	8	full-splice_match	RPLP0	ENST00000392514	1218	8	104	141	multi-exon	FALSE	canonical	0	0	25	2	NA	1	0	FALSE	NA	NA	0	C	coding	300	900	74	973	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6146_CONTIG_1	4	+	944	7	incomplete-splice_match	ALB	ENST00000505649	1509	11	-28	593	internal_fragment	FALSE	canonical	0	0	905	2	NA	0	0	FALSE	NA	NA	0	C	coding	300	900	45	944	50	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_36_CONTIG_1	14	-	451	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	553	446	internal_fragment	FALSE	canonical	0	0	127	2	NA	0	0	FALSE	NA	NA	0	C	coding	80	240	211	450	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4581_CONTIG_1	X	+	742	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1429	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7149_CONTIG_1	10	+	326	2	incomplete-splice_match	CYP2E1	ENST00000541261	475	4	182	-33	internal_fragment	FALSE	canonical	0	0	210	2	NA	0	0	FALSE	NA	NA	0	C	coding	97	291	34	324	15	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2556_CONTIG_1	7	-	358	3	incomplete-splice_match	BRAT1	ENST00000467558	4440	10	1321	2761	internal_fragment	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3544_CONTIG_1	10	-	916	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	161	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_737_CONTIG_1	4	+	1317	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	231	-29	internal_fragment	FALSE	canonical	0	0	1155	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	266	1129	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2645_CONTIG_1	2	-	1351	7	novel_not_in_catalog	ITSN2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	250	2	NA	0	0	TRUE	NA	NA	0	A	coding	151	453	287	739	30	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5717_CONTIG_1	4	+	451	3	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	252	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2526_CONTIG_1	14	-	901	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	-7	556	internal_fragment	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	286	858	42	899	40	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1658_CONTIG_1	6	-	682	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	243	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	206	618	63	680	35	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4637_CONTIG_1	8	-	898	7	full-splice_match	EEF1D	ENST00000528610	923	7	11	14	multi-exon	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	C	coding	257	771	75	845	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5658_CONTIG_1	11	-	866	5	incomplete-splice_match	HPX	ENST00000265983	1652	10	633	153	5prime_fragment	FALSE	canonical	0	0	171	2	NA	0	0	FALSE	NA	NA	0	C	coding	234	702	153	854	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_955_CONTIG_1	4	+	2056	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1895	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	35	0.954	0.046	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3480_CONTIG_1	14	+	1625	7	incomplete-splice_match	PCK2	ENST00000561286	2012	10	390	-3	internal_fragment	FALSE	canonical	0	0	1007	2	NA	0	0	FALSE	NA	NA	0	C	coding	484	1452	8	1459	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5583_CONTIG_1	17	-	1533	8	full-splice_match	VTN	ENST00000226218	2149	8	515	101	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	476	1428	105	1532	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6118_CONTIG_1	4	+	1807	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	81	multi-exon	FALSE	canonical	0	0	1357	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4944_CONTIG_1	11	-	608	3	full-splice_match	NDUFC2	ENST00000281031	2518	3	357	1553	multi-exon	FALSE	canonical	0	0	284	2	NA	1	0	FALSE	NA	NA	0	A	coding	119	357	119	475	20	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7619_CONTIG_1	16	+	1050	2	genic_intron	novelGene_188	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	23	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8536_CONTIG_1	1	-	472	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	6	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3852_CONTIG_1	19	+	848	4	full-splice_match	FTL	ENST00000331825	878	4	8	22	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8481_CONTIG_1	15	+	2069	6	incomplete-splice_match	SORD	ENST00000558580	1395	9	331	-1005	internal_fragment	FALSE	canonical	0	0	620	2	NA	1	0	FALSE	NA	NA	0	C	coding	250	750	34	783	30	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6204_CONTIG_1	1	+	1914	10	incomplete-splice_match	C8A	ENST00000361249	2356	11	173	269	internal_fragment	FALSE	canonical	0	0	1526	2	NA	0	0	FALSE	NA	NA	0	B	coding	282	846	830	1675	25	0.812	0.188	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_919_CONTIG_1	4	+	1991	15	full-splice_match	ALB	ENST00000295897	2263	15	50	222	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8628_CONTIG_1	11	-	870	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	29	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5121_CONTIG_1	4	+	1939	15	full-splice_match	ALB	ENST00000295897	2263	15	50	274	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8737_CONTIG_1	1	-	1071	4	novel_not_in_catalog	CROCCP2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	805	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1494_CONTIG_1	3	+	349	4	incomplete-splice_match	SEC62	ENST00000481435	627	6	-19	297	3prime_fragment	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.42	0.58	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6008_CONTIG_1	4	-	803	5	full-splice_match	H2AFZ	ENST00000296417	979	5	113	63	multi-exon	FALSE	canonical	0	0	108	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	106	489	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1121_CONTIG_1	17	-	1529	10	full-splice_match	SHMT1	ENST00000352886	2136	10	-91	698	multi-exon	FALSE	canonical	0	0	127	2	NA	0	0	FALSE	NA	NA	0	C	coding	401	1203	153	1355	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2040_CONTIG_1	X	-	1462	5	novel_not_in_catalog	SERPINA7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	30	2	NA	0	0	TRUE	NA	NA	0	A	coding	377	1131	48	1178	30	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2009_CONTIG_1	6	-	1915	19	novel_not_in_catalog	RARS2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	103	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.91	0.09	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8317_CONTIG_1	12	+	777	4	incomplete-splice_match	HSD17B6	ENST00000322165	1512	5	91	644	internal_fragment	FALSE	canonical	0	0	755	2	NA	0	0	FALSE	NA	NA	0	C	coding	252	756	20	775	30	0.336	0.664	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_184_CONTIG_1	14	+	1424	5	full-splice_match	ZFYVE21	ENST00000554630	566	5	-33	-825	multi-exon	FALSE	canonical	0	0	478	2	NA	0	0	FALSE	NA	NA	0	A	coding	183	549	45	593	25	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4354_CONTIG_1	4	+	1375	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	151	-7	internal_fragment	FALSE	canonical	0	0	1235	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	346	1209	65	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3808_CONTIG_1	1	-	1304	3	novel_in_catalog	CRP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	coding	224	672	105	776	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8320_CONTIG_1	4	+	1527	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	531	205	internal_fragment	FALSE	canonical	0	0	1411	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	522	1385	0	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8116_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	48	165	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_359_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6371_CONTIG_1	6	-	335	4	novel_in_catalog	GSTA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4291_CONTIG_1	14	+	1425	15	incomplete-splice_match	ARID4A	ENST00000395168	4051	24	25	2601	3prime_fragment	FALSE	canonical	0	0	1349	2	NA	0	0	FALSE	NA	NA	0	B	coding	416	1248	178	1425	70	0.672	0.328	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1263_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	4	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7765_CONTIG_1	4	+	1951	15	full-splice_match	ALB	ENST00000295897	2263	15	48	264	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5500_CONTIG_1	11	-	1542	10	full-splice_match	HPX	ENST00000265983	1652	10	77	33	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6365_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2393_CONTIG_1	15	-	1853	7	incomplete-splice_match	GATM	ENST00000396659	2597	9	729	15	5prime_fragment	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5823_CONTIG_1	4	-	949	5	full-splice_match	FGA	ENST00000403106	2248	5	24	1275	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	298	894	56	949	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_691_CONTIG_1	15	-	1770	4	novel_in_catalog	PCSK6	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	106	2	NA	0	0	FALSE	NA	NA	0	A	coding	80	240	205	444	25	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_580_CONTIG_1	4	-	1621	9	full-splice_match	FGG	ENST00000336098	1659	9	-5	43	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	45	1403	45	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2429_CONTIG_1	4	+	1617	8	full-splice_match	FGB	ENST00000302068	1975	8	59	299	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6116_CONTIG_1	14	-	1006	2	novel_in_catalog	SERPINA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	968	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8301_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5835_CONTIG_1	12	-	885	7	full-splice_match	RPL6	ENST00000202773	947	7	38	24	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	18	881	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3768_CONTIG_1	14	+	733	2	full-splice_match	ANG	ENST00000397990	742	2	4	5	multi-exon	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	117	557	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1167_CONTIG_1	14	-	693	2	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	230	527	internal_fragment	FALSE	canonical	0	0	450	2	NA	0	0	FALSE	NA	NA	0	C	coding	210	630	63	692	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4816_CONTIG_1	11	+	512	4	full-splice_match	SAA1	ENST00000356524	615	4	90	13	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7087_CONTIG_1	4	+	397	3	full-splice_match	FGB	ENST00000497097	574	3	5	172	multi-exon	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	3	395	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4174_CONTIG_1	11	-	484	5	full-splice_match	RPS25	ENST00000527673	835	5	346	5	multi-exon	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	61	435	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6804_CONTIG_1	17	-	828	8	full-splice_match	DCXR	ENST00000306869	887	8	35	24	multi-exon	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	C	coding	244	732	16	747	25	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3875_CONTIG_1	4	+	1589	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	512	162	internal_fragment	FALSE	canonical	0	0	1430	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	16	1404	35	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7095_CONTIG_1	4	+	1990	15	full-splice_match	ALB	ENST00000295897	2263	15	48	225	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2586_CONTIG_1	11	-	420	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	479	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	39	419	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8079_CONTIG_1	8	-	488	5	full-splice_match	RPL30	ENST00000287038	543	5	47	8	multi-exon	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	69	413	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_496_CONTIG_1	8	-	595	4	incomplete-splice_match	FGL1	ENST00000522636	773	5	383	-205	5prime_fragment	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.432	0.568	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_734_CONTIG_1	9	+	760	6	full-splice_match	ORM1	ENST00000259396	802	6	42	0	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3032_CONTIG_1	22	+	1261	2	novel_in_catalog	MPST	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	704	2	NA	0	0	FALSE	NA	NA	0	B	coding	297	891	110	1000	10	0.574	0.426	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6326_CONTIG_1	14	-	1246	4	incomplete-splice_match	SERPINA11	ENST00000334708	1476	5	229	1	5prime_fragment	FALSE	canonical	0	0	479	2	NA	0	0	FALSE	NA	NA	0	A	coding	218	654	449	1102	40	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7148_CONTIG_1	4	+	1927	15	full-splice_match	ALB	ENST00000295897	2263	15	50	286	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7571_CONTIG_1	2	+	784	7	full-splice_match	EEF1B2	ENST00000236957	844	7	36	24	multi-exon	FALSE	canonical	0	0	608	2	NA	1	0	FALSE	NA	NA	0	C	coding	225	675	86	760	55	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6684_CONTIG_1	17	-	1614	8	full-splice_match	VTN	ENST00000226218	2149	8	495	40	multi-exon	FALSE	canonical	0	0	188	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	125	1558	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2939_CONTIG_1	3	+	1575	7	full-splice_match	AHSG	ENST00000411641	1711	7	133	3	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	87	1187	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_498_CONTIG_1	9	-	1711	9	full-splice_match	C9orf78	ENST00000372447	1795	9	13	71	multi-exon	FALSE	canonical	0	0	124	2	NA	3	0	FALSE	NA	NA	0	C	coding	289	867	42	908	60	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4936_CONTIG_1	12	-	900	2	incomplete-splice_match	SCARB1	ENST00000376788	2304	11	1278	126	5prime_fragment	FALSE	canonical	0	0	79	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	0	0.486	0.514	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7434_CONTIG_1	1	-	923	7	full-splice_match	MED8	ENST00000372457	1924	7	8	993	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	A	coding	268	804	37	840	55	0.256	0.744	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2128_CONTIG_1	7	+	770	4	full-splice_match	MALSU1	ENST00000466681	3044	4	115	2159	multi-exon	FALSE	canonical	0	0	555	2	NA	0	0	FALSE	NA	NA	0	A	coding	220	660	81	740	25	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5177_CONTIG_1	4	-	2050	5	full-splice_match	FGA	ENST00000403106	2248	5	22	176	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6006_CONTIG_1	16	+	1086	3	full-splice_match	HP	ENST00000566821	3024	3	1911	27	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5856_CONTIG_1	4	+	2007	15	full-splice_match	ALB	ENST00000295897	2263	15	50	206	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6617_CONTIG_1	1	+	1481	2	antisense	novelGene_CRP_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	1385	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7946_CONTIG_1	9	-	1687	3	full-splice_match	BAAT	ENST00000395051	2252	3	347	218	multi-exon	FALSE	canonical	0	0	190	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6515_CONTIG_1	9	-	504	3	novel_not_in_catalog	WDR34	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	125	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3410_CONTIG_1	13	+	1936	14	novel_not_in_catalog	PCCA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1185	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.242	0.758	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4066_CONTIG_1	4	-	1542	10	full-splice_match	FGG	ENST00000404648	1760	10	193	25	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2085_CONTIG_1	18	+	590	4	full-splice_match	TTR	ENST00000237014	957	4	151	216	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5996_CONTIG_1	5	-	1880	4	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	358	5	5prime_fragment	FALSE	canonical	0	0	102	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8276_CONTIG_1	6	+	922	6	incomplete-splice_match	PLG	ENST00000308192	2741	19	1771	48	internal_fragment	FALSE	canonical	0	0	563	2	NA	0	0	FALSE	NA	NA	0	C	coding	207	621	102	722	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_187_CONTIG_1	4	+	2023	15	full-splice_match	ALB	ENST00000295897	2263	15	50	190	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5645_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5724_CONTIG_1	3	+	960	7	full-splice_match	HRG	ENST00000232003	2015	7	62	993	multi-exon	FALSE	canonical	0	0	759	2	NA	1	0	FALSE	NA	NA	0	C	coding	314	942	19	960	10	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3253_CONTIG_1	9	-	1581	9	full-splice_match	ALDOB	ENST00000374855	2451	9	53	817	multi-exon	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	73	1164	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5573_CONTIG_1	3	+	2168	17	full-splice_match	TF	ENST00000402696	2968	17	437	363	multi-exon	FALSE	canonical	0	0	2110	2	NA	1	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	35	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_672_CONTIG_1	3	+	703	6	full-splice_match	RPL14	ENST00000338970	855	6	47	105	multi-exon	FALSE	canonical	0	0	376	2	NA	1	0	FALSE	NA	NA	0	C	coding	215	645	23	667	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2433_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_574_CONTIG_1	8	+	2188	3	novel_in_catalog	DCAF13	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	332	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6667_CONTIG_1	12	-	1273	14	full-splice_match	HPD	ENST00000289004	1419	14	0	146	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	393	1179	37	1215	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8618_CONTIG_1	1	+	599	6	full-splice_match	RPS8	ENST00000396651	881	6	135	147	multi-exon	FALSE	canonical	0	0	542	2	NA	0	0	FALSE	NA	NA	0	A	coding	191	573	26	598	30	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2445_CONTIG_1	4	+	1941	15	full-splice_match	ALB	ENST00000295897	2263	15	48	274	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	5	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3894_CONTIG_1	4	+	1581	8	full-splice_match	FGB	ENST00000302068	1975	8	59	335	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5817_CONTIG_1	16	-	404	3	full-splice_match	MT1G	ENST00000379811	405	3	0	1	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	49	147	150	296	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7898_CONTIG_1	4	+	2022	15	full-splice_match	ALB	ENST00000295897	2263	15	50	191	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8710_CONTIG_1	17	+	2085	10	full-splice_match	NDEL1	ENST00000402554	1858	10	87	-314	multi-exon	FALSE	canonical	0	0	1042	2	NA	0	0	FALSE	NA	NA	0	C	coding	328	984	64	1047	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_822_CONTIG_1	4	+	1974	15	full-splice_match	ALB	ENST00000295897	2263	15	50	239	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7146_CONTIG_1	14	+	1414	3	full-splice_match	NUBPL	ENST00000552888	5032	3	2727	891	multi-exon	FALSE	canonical	0	0	204	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8294_CONTIG_1	9	+	759	6	full-splice_match	ORM1	ENST00000259396	802	6	42	1	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5470_CONTIG_1	9	+	709	6	incomplete-splice_match	ASS1	ENST00000372393	1548	16	818	21	internal_fragment	FALSE	canonical	0	0	450	2	NA	0	0	FALSE	NA	NA	0	C	coding	161	483	11	493	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6675_CONTIG_1	7	+	763	7	novel_not_in_catalog	PPIA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	734	2	NA	1	2	TRUE	NA	NA	0	C	coding	165	495	44	538	50	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4318_CONTIG_1	14	+	1400	3	novel_in_catalog	RNASE4	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	203	2	NA	1	0	FALSE	NA	NA	0	C	coding	147	441	221	661	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5594_CONTIG_1	14	+	1383	2	genic_intron	novelGene_673	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	200	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4680_CONTIG_1	13	-	1159	9	novel_in_catalog	ALG5	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	245	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6104_CONTIG_1	11	-	973	3	genic_intron	novelGene_719	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	928	2	NA	1	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.3	0.7	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7512_CONTIG_1	4	+	2028	15	full-splice_match	ALB	ENST00000295897	2263	15	45	190	multi-exon	FALSE	canonical	0	0	1897	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	45	1871	50	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8658_CONTIG_1	7	-	1729	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	80	multi-exon	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7993_CONTIG_1	14	-	1013	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	444	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6138_CONTIG_1	22	+	735	5	novel_not_in_catalog	LL22NC03-80A10.6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	491	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8046_CONTIG_1	1	-	409	4	full-splice_match	APOA2	ENST00000367990	474	4	13	52	multi-exon	FALSE	canonical	0	0	21	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	46	345	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2560_CONTIG_1	12	+	917	4	full-splice_match	MGST1	ENST00000396210	914	4	3	-6	multi-exon	FALSE	canonical	0	0	302	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4946_CONTIG_1	9	+	1340	16	novel_not_in_catalog	ASS1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1151	2	NA	0	0	TRUE	NA	NA	0	C	coding	385	1155	40	1194	15	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3846_CONTIG_1	6	-	391	4	incomplete-splice_match	ALDH8A1	ENST00000367845	2383	6	188	1804	internal_fragment	FALSE	canonical	0	0	12	2	NA	0	0	FALSE	NA	NA	0	B	coding	68	204	187	390	30	0.452	0.548	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3235_CONTIG_1	4	+	1425	12	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1273	2	NA	0	0	TRUE	NA	NA	0	C	coding	170	510	41	550	45	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3962_CONTIG_1	15	-	1045	6	full-splice_match	SEC11A	ENST00000268220	1656	6	606	5	multi-exon	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_859_CONTIG_1	2	+	1429	7	novel_in_catalog	EML4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	911	2	NA	1	0	FALSE	NA	NA	0	B	coding	269	807	245	1051	25	0.542	0.458	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1770_CONTIG_1	17	-	1063	8	full-splice_match	APOH	ENST00000205948	1176	8	7	106	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	344	1032	32	1063	20	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6260_CONTIG_1	1	-	1493	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	51	50	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	69	1460	25	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3109_CONTIG_1	4	+	1560	2	full-splice_match	MRFAP1	ENST00000382581	1584	2	-6	30	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3081_CONTIG_1	11	-	890	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	9	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5780_CONTIG_1	11	+	525	4	full-splice_match	APOC3	ENST00000227667	550	4	15	10	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7524_CONTIG_1	12	-	1403	9	full-splice_match	MLF2	ENST00000203630	1958	9	441	114	multi-exon	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	C	coding	248	744	205	948	5	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_651_CONTIG_1	16	-	399	3	full-splice_match	MT1G	ENST00000444837	406	3	0	7	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5884_CONTIG_1	4	-	1232	6	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	111	2	NA	0	0	TRUE	NA	NA	0	C	coding	276	828	58	885	10	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7145_CONTIG_1	5	+	1955	14	incomplete-splice_match	HSPA4	ENST00000304858	4825	19	846	2024	internal_fragment	FALSE	canonical	0	0	1762	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.368	0.632	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7390_CONTIG_1	4	-	1457	10	full-splice_match	FGG	ENST00000404648	1760	10	193	110	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	45	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4447_CONTIG_1	5	-	1348	8	full-splice_match	SAR1B	ENST00000439578	929	8	-51	-368	multi-exon	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_291_CONTIG_1	22	-	1490	2	incomplete-splice_match	ST13	ENST00000216218	3595	12	1448	657	5prime_fragment	FALSE	canonical	0	0	15	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	0	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3074_CONTIG_1	12	+	425	2	full-splice_match	RP4-605O3.4	ENST00000548468	500	2	45	30	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7637_CONTIG_1	6	-	1843	11	full-splice_match	FKBP5	ENST00000357266	3772	11	22	1907	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	457	1371	132	1502	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3507_CONTIG_1	14	+	1547	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	28	multi-exon	FALSE	canonical	0	0	1133	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	45	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6387_CONTIG_1	12	-	1560	8	full-splice_match	SDS	ENST00000257549	1606	8	-1	47	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	128	1108	25	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1742_CONTIG_1	4	+	1436	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1104	2	NA	2	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4347_CONTIG_1	11	-	411	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	488	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	124	372	39	410	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8564_CONTIG_1	5	-	1305	2	full-splice_match	CD14	ENST00000302014	1886	2	507	74	multi-exon	FALSE	canonical	0	0	126	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	124	1248	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8478_CONTIG_1	1	+	1383	9	novel_not_in_catalog	FCGR2B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1355	2	NA	1	2	TRUE	NA	NA	0	A	coding	291	873	74	946	70	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4003_CONTIG_1	19	+	1123	4	full-splice_match	APOE	ENST00000252486	1208	4	44	41	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6553_CONTIG_1	4	+	2041	15	full-splice_match	ALB	ENST00000295897	2263	15	48	174	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1869_CONTIG_1	10	-	919	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	158	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8648_CONTIG_1	17	+	773	5	full-splice_match	MRPL12	ENST00000333676	1028	5	110	145	multi-exon	FALSE	canonical	0	0	515	2	NA	0	0	FALSE	NA	NA	0	A	coding	162	486	144	629	30	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4889_CONTIG_1	9	-	577	4	incomplete-splice_match	PLIN2	ENST00000276914	1972	8	463	932	internal_fragment	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	129	575	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2910_CONTIG_1	19	+	1150	4	full-splice_match	APOE	ENST00000252486	1208	4	44	14	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8639_CONTIG_1	9	+	769	10	novel_not_in_catalog	ASS1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	502	2	NA	0	0	TRUE	NA	NA	0	C	coding	101	303	38	340	50	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5543_CONTIG_1	10	-	1502	9	full-splice_match	PHYH	ENST00000263038	1577	9	37	38	multi-exon	FALSE	canonical	0	0	97	2	NA	1	0	FALSE	NA	NA	0	C	coding	338	1014	23	1036	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5525_CONTIG_1	4	+	2036	15	full-splice_match	ALB	ENST00000295897	2263	15	50	177	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_395_CONTIG_1	17	-	1164	8	full-splice_match	APOH	ENST00000205948	1176	8	6	6	multi-exon	FALSE	canonical	0	0	96	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_149_CONTIG_1	5	-	1240	7	full-splice_match	SAR1B	ENST00000402673	6682	7	157	5285	multi-exon	FALSE	canonical	0	0	104	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6094_CONTIG_1	1	-	1154	3	intergenic	novelGene_905	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	66	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.22	0.78	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_292_CONTIG_1	17	-	1614	8	full-splice_match	VTN	ENST00000226218	2149	8	515	20	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3408_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	14	2	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5919_CONTIG_1	11	+	972	9	novel_not_in_catalog	F2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	733	2	NA	0	0	TRUE	NA	NA	0	C	coding	164	492	36	527	20	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2265_CONTIG_1	5	-	545	4	full-splice_match	TBCA	ENST00000380377	683	4	74	64	multi-exon	FALSE	canonical	0	0	83	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7168_CONTIG_1	10	-	1855	2	genic_intron	novelGene_439	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	62	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2767_CONTIG_1	14	-	1009	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-14	455	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	49	1008	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7053_CONTIG_1	1	-	1202	3	full-splice_match	GBP1	ENST00000479889	566	3	243	-879	multi-exon	FALSE	canonical	0	0	22	2	NA	3	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2576_CONTIG_1	4	-	1609	13	full-splice_match	GC	ENST00000273951	1972	13	286	77	multi-exon	FALSE	canonical	0	0	116	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	40	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6507_CONTIG_1	16	+	379	3	full-splice_match	MT1X	ENST00000394485	450	3	46	25	multi-exon	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7285_CONTIG_1	19	-	1072	6	incomplete-splice_match	NAPA	ENST00000594001	1417	9	345	0	5prime_fragment	FALSE	canonical	0	0	52	2	NA	1	0	FALSE	NA	NA	0	B	coding	103	309	153	461	50	0.588	0.412	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4065_CONTIG_1	19	-	1212	8	full-splice_match	POLR2E	ENST00000215587	1504	8	251	41	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	210	630	34	663	40	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1924_CONTIG_1	19	+	803	4	novel_not_in_catalog	GRWD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	369	2	NA	0	0	TRUE	NA	NA	0	B	coding	183	549	5	553	50	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5801_CONTIG_1	9	-	1480	9	novel_not_in_catalog	ALDOB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	63	2	NA	2	0	TRUE	NA	NA	0	C	coding	132	396	660	1055	30	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2740_CONTIG_1	19	-	519	4	novel_in_catalog	C3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	B	coding	142	426	93	518	20	0.492	0.508	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5595_CONTIG_1	4	+	2058	15	full-splice_match	ALB	ENST00000295897	2263	15	49	156	multi-exon	FALSE	canonical	0	0	1893	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7322_CONTIG_1	8	+	943	6	full-splice_match	DCTN6	ENST00000522141	820	6	50	-173	multi-exon	FALSE	canonical	0	0	383	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5946_CONTIG_1	12	+	647	3	full-splice_match	DYNLL1	ENST00000242577	720	3	57	16	multi-exon	FALSE	canonical	0	0	242	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2364_CONTIG_1	6	-	1757	8	novel_in_catalog	CYP39A1	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	315	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2842_CONTIG_1	10	-	896	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	181	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_940_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	50	162	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4808_CONTIG_1	1	+	552	6	full-splice_match	MGST3	ENST00000367889	1015	6	396	67	multi-exon	FALSE	canonical	0	0	366	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	45	500	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_956_CONTIG_1	9	+	752	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	30	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2464_CONTIG_1	12	+	1427	5	full-splice_match	HSD17B6	ENST00000322165	1512	5	-4	89	multi-exon	FALSE	canonical	0	0	850	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	115	1065	35	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6324_CONTIG_1	8	-	988	6	full-splice_match	HRSP12	ENST00000254878	1057	6	70	-1	multi-exon	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4624_CONTIG_1	12	+	974	2	incomplete-splice_match	PEBP1	ENST00000542939	708	3	157	-423	internal_fragment	FALSE	canonical	0	0	27	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3279_CONTIG_1	11	-	887	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	12	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1175_CONTIG_1	9	-	1260	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	2	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4140_CONTIG_1	20	+	1508	3	novel_not_in_catalog	ATRN	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1447	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6411_CONTIG_1	10	+	1728	7	full-splice_match	RAB18	ENST00000356940	4886	7	46	3112	multi-exon	FALSE	canonical	0	0	501	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4758_CONTIG_1	2	+	1110	11	incomplete-splice_match	MYO1B	ENST00000439065	2672	12	139	1423	internal_fragment	FALSE	canonical	0	0	1053	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.562	0.438	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2372_CONTIG_1	14	-	1014	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	449	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_170_CONTIG_1	1	-	316	2	incomplete-splice_match	HMGCS2	ENST00000544913	1925	9	-4	1613	internal_fragment	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1261_CONTIG_1	19	-	1632	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	132	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	55	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8401_CONTIG_1	19	+	735	4	full-splice_match	FTL	ENST00000331825	878	4	8	135	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7639_CONTIG_1	4	+	1144	7	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	849	2	NA	0	0	FALSE	NA	NA	0	C	coding	358	1074	5	1078	30	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8139_CONTIG_1	9	+	764	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-4	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6766_CONTIG_1	19	-	1692	8	full-splice_match	A1BG	ENST00000263100	1722	8	-14	44	multi-exon	FALSE	canonical	0	0	110	2	NA	1	0	FALSE	NA	NA	0	C	coding	495	1485	77	1561	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7362_CONTIG_1	14	-	1701	13	full-splice_match	LGMN	ENST00000557434	1797	13	22	74	multi-exon	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	A	coding	376	1128	165	1292	40	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5233_CONTIG_1	19	-	1761	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	3	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1531_CONTIG_1	X	-	1202	8	full-splice_match	TSPAN6	ENST00000373020	2206	8	-23	1027	multi-exon	FALSE	canonical	0	0	222	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4893_CONTIG_1	4	+	481	5	incomplete-splice_match	ALB	ENST00000415165	1483	11	863	139	internal_fragment	FALSE	canonical	0	0	455	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	10	429	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6412_CONTIG_1	19	+	352	2	novel_not_in_catalog	HAMP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	147	2	NA	0	0	FALSE	NA	NA	0	A	coding	100	300	51	350	15	0.464	0.536	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_864_CONTIG_1	1	-	477	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	1	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6176_CONTIG_1	16	+	391	3	full-splice_match	MT2A	ENST00000245185	786	3	385	10	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1512_CONTIG_1	10	+	1176	11	full-splice_match	ADK	ENST00000286621	1169	11	-5	-2	multi-exon	FALSE	canonical	0	0	1019	2	NA	2	0	FALSE	NA	NA	0	A	coding	362	1086	56	1141	25	0.364	0.636	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_557_CONTIG_1	4	+	1959	15	full-splice_match	ALB	ENST00000295897	2263	15	48	256	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_584_CONTIG_1	4	+	1693	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	195	multi-exon	FALSE	canonical	0	0	1357	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1300_CONTIG_1	22	+	1187	4	full-splice_match	SERPIND1	ENST00000406799	1798	4	864	-253	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	233	699	67	765	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2993_CONTIG_1	5	-	563	3	incomplete-splice_match	C9	ENST00000263408	2713	11	618	1532	internal_fragment	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.452	0.548	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7494_CONTIG_1	9	-	1784	2	incomplete-splice_match	ABHD17B	ENST00000333421	2614	4	580	250	5prime_fragment	FALSE	canonical	0	0	179	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7945_CONTIG_1	11	-	877	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	22	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8125_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8366_CONTIG_1	19	-	1174	6	novel_in_catalog	CYP2A6	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	197	2	NA	0	0	FALSE	NA	NA	0	C	coding	371	1113	18	1130	15	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6661_CONTIG_1	5	-	1098	8	full-splice_match	GNB2L1	ENST00000512805	1403	8	299	6	multi-exon	FALSE	canonical	0	0	219	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	111	1061	15	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5921_CONTIG_1	16	+	1226	5	full-splice_match	HP	ENST00000398131	1252	5	17	9	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_15_CONTIG_1	4	+	1990	15	full-splice_match	ALB	ENST00000295897	2263	15	50	223	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8200_CONTIG_1	16	+	1384	9	incomplete-splice_match	ACSM2A	ENST00000417235	1835	13	762	-311	internal_fragment	FALSE	canonical	0	0	800	2	NA	0	0	FALSE	NA	NA	0	C	coding	270	810	93	902	55	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4676_CONTIG_1	17	-	942	6	full-splice_match	SAT2	ENST00000380466	974	6	-7	39	multi-exon	FALSE	canonical	0	0	324	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	22	768	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8055_CONTIG_1	4	+	1817	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	111	3prime_fragment	FALSE	canonical	0	0	1693	2	NA	0	0	FALSE	NA	NA	0	C	coding	592	1776	42	1817	25	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1442_CONTIG_1	11	+	391	4	full-splice_match	APOC3	ENST00000227667	550	4	15	144	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5255_CONTIG_1	14	-	1013	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	450	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3160_CONTIG_1	3	-	2351	4	novel_in_catalog	HGD	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1687	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	1655	2143	25	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_533_CONTIG_1	7	-	1502	6	incomplete-splice_match	HIBADH	ENST00000428288	1669	7	171	-4	5prime_fragment	FALSE	canonical	0	0	110	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3845_CONTIG_1	19	+	813	4	full-splice_match	FTL	ENST00000331825	878	4	8	57	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6485_CONTIG_1	6	+	530	5	full-splice_match	PFDN6	ENST00000395131	884	5	287	67	multi-exon	FALSE	canonical	0	0	379	2	NA	0	0	FALSE	NA	NA	0	A	coding	129	387	120	506	25	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3335_CONTIG_1	4	+	1148	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	231	104	internal_fragment	FALSE	canonical	0	0	1087	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	198	1061	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5012_CONTIG_1	4	+	1062	5	incomplete-splice_match	FGB	ENST00000509493	1164	6	305	-203	internal_fragment	FALSE	canonical	0	0	556	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6358_CONTIG_1	2	-	1378	3	novel_not_in_catalog	AC092155.4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	77	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_308_CONTIG_1	15	+	724	3	full-splice_match	GCHFR	ENST00000260447	775	3	48	3	multi-exon	FALSE	canonical	0	0	244	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	0	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5931_CONTIG_1	21	+	694	5	incomplete-splice_match	ETS2	ENST00000360938	3766	10	98	2974	3prime_fragment	FALSE	canonical	0	0	496	2	NA	0	0	FALSE	NA	NA	0	B	coding	167	501	193	693	30	0.552	0.448	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3632_CONTIG_1	16	+	247	3	full-splice_match	MT1X	ENST00000394485	450	3	49	154	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1871_CONTIG_1	4	+	2037	15	full-splice_match	ALB	ENST00000295897	2263	15	48	178	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2864_CONTIG_1	20	-	1409	4	full-splice_match	TMEM230	ENST00000202834	1472	4	46	17	multi-exon	FALSE	canonical	0	0	97	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6196_CONTIG_1	16	+	764	8	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	741	2	NA	0	0	TRUE	NA	NA	0	C	coding	217	651	28	678	30	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7774_CONTIG_1	14	+	459	2	incomplete-splice_match	SERPINA3	ENST00000556968	1289	4	-14	844	internal_fragment	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	66	458	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_123_CONTIG_1	10	+	289	2	incomplete-splice_match	CYP2C9	ENST00000473496	841	4	121	431	internal_fragment	FALSE	canonical	0	0	131	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4618_CONTIG_1	10	+	1619	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	48	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6099_CONTIG_1	3	+	1871	14	incomplete-splice_match	TF	ENST00000264998	2143	16	226	46	internal_fragment	FALSE	canonical	0	0	1711	2	NA	0	0	FALSE	NA	NA	0	C	coding	571	1713	31	1743	45	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7493_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	48	183	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2585_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	48	162	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5190_CONTIG_1	12	+	1244	4	incomplete-splice_match	HSD17B6	ENST00000322165	1512	5	91	177	internal_fragment	FALSE	canonical	0	0	755	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	20	970	50	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7261_CONTIG_1	4	+	1600	8	full-splice_match	FGB	ENST00000302068	1975	8	61	314	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1425_CONTIG_1	1	-	1232	7	incomplete-splice_match	HMGCS2	ENST00000544913	1925	9	673	20	5prime_fragment	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	211	633	154	786	65	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5615_CONTIG_1	11	-	2173	10	incomplete-splice_match	EIF4G2	ENST00000525681	3654	21	1400	81	5prime_fragment	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5308_CONTIG_1	14	-	988	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	475	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	313	939	48	986	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5326_CONTIG_1	10	+	1625	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	42	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_458_CONTIG_1	6	-	825	5	incomplete-splice_match	HLA-B	ENST00000412585	1547	8	718	4	5prime_fragment	FALSE	canonical	0	0	206	2	NA	0	0	FALSE	NA	NA	0	C	coding	32	96	302	397	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2501_CONTIG_1	14	+	814	2	full-splice_match	ANG	ENST00000336811	1222	2	383	25	multi-exon	FALSE	canonical	0	0	199	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	218	658	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_71_CONTIG_1	4	+	1567	12	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1417	2	NA	0	0	TRUE	NA	NA	0	C	coding	210	630	2	631	50	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_613_CONTIG_1	11	+	500	4	full-splice_match	SAA1	ENST00000356524	615	4	90	25	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5623_CONTIG_1	4	+	1187	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	222	74	internal_fragment	FALSE	canonical	0	0	1096	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	207	1070	55	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8233_CONTIG_1	4	-	1653	9	full-splice_match	FGG	ENST00000336098	1659	9	-38	44	multi-exon	FALSE	canonical	0	0	155	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	78	1436	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5900_CONTIG_1	14	+	1581	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	-6	multi-exon	FALSE	canonical	0	0	1133	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6083_CONTIG_1	11	-	880	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	19	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2820_CONTIG_1	6	+	1470	7	full-splice_match	RPL7L1	ENST00000304734	3769	7	247	2052	multi-exon	FALSE	canonical	0	0	756	2	NA	0	0	FALSE	NA	NA	0	A	coding	246	738	10	747	55	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4582_CONTIG_1	6	+	977	6	incomplete-splice_match	PLG	ENST00000308192	2741	19	1744	20	internal_fragment	FALSE	canonical	0	0	590	2	NA	0	0	FALSE	NA	NA	0	C	coding	207	621	129	749	20	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8408_CONTIG_1	4	+	1900	8	full-splice_match	FGB	ENST00000302068	1975	8	55	20	multi-exon	FALSE	canonical	0	0	1252	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3686_CONTIG_1	11	+	500	4	full-splice_match	SAA1	ENST00000356524	615	4	90	25	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2312_CONTIG_1	4	-	1328	7	novel_not_in_catalog	ADH4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	93	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7262_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7126_CONTIG_1	4	+	2016	15	full-splice_match	ALB	ENST00000295897	2263	15	51	196	multi-exon	FALSE	canonical	0	0	1891	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2162_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_857_CONTIG_1	14	-	782	4	novel_in_catalog	SERPINA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	238	714	67	780	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1801_CONTIG_1	12	-	1138	3	novel_in_catalog	HDAC7	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	726	2	NA	0	0	FALSE	NA	NA	0	A	coding	188	564	574	1137	10	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6705_CONTIG_1	18	+	614	4	full-splice_match	TTR	ENST00000237014	957	4	151	192	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3242_CONTIG_1	12	-	1280	3	novel_not_in_catalog	KCNJ8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	174	2	NA	0	0	TRUE	NA	NA	0	A	coding	216	648	465	1112	35	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7203_CONTIG_1	4	+	1091	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	837	3prime_fragment	FALSE	canonical	0	0	884	2	NA	1	0	FALSE	NA	NA	0	C	coding	350	1050	42	1091	35	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3561_CONTIG_1	8	-	845	6	full-splice_match	RPL8	ENST00000262584	1041	6	196	0	multi-exon	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	A	coding	257	771	38	808	10	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2730_CONTIG_1	16	+	1189	5	full-splice_match	HP	ENST00000398131	1252	5	17	46	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_129_CONTIG_1	4	+	1992	15	full-splice_match	ALB	ENST00000295897	2263	15	50	221	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2093_CONTIG_1	4	+	2037	15	full-splice_match	ALB	ENST00000295897	2263	15	49	177	multi-exon	FALSE	canonical	0	0	1893	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	60	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5230_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4723_CONTIG_1	15	+	228	2	full-splice_match	B2M	ENST00000544417	1027	2	9	790	multi-exon	FALSE	canonical	0	0	88	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2335_CONTIG_1	5	-	2108	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	-52	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_478_CONTIG_1	9	+	758	6	full-splice_match	ORM1	ENST00000259396	802	6	42	2	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1388_CONTIG_1	17	-	1572	8	full-splice_match	VTN	ENST00000226218	2149	8	576	1	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	44	1477	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1150_CONTIG_1	14	-	456	2	incomplete-splice_match	SERPINA1	ENST00000553327	581	3	256	-131	internal_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	136	408	48	455	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4916_CONTIG_1	11	-	1546	10	full-splice_match	HPX	ENST00000265983	1652	10	91	15	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	11	1396	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8101_CONTIG_1	9	+	726	6	full-splice_match	ORM1	ENST00000259396	802	6	45	31	multi-exon	FALSE	canonical	0	0	573	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	34	636	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_68_CONTIG_1	7	+	964	7	novel_not_in_catalog	TMEM176A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	683	2	NA	0	0	FALSE	NA	NA	0	C	coding	169	507	61	567	10	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4550_CONTIG_1	4	+	1716	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	172	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7907_CONTIG_1	6	+	1605	3	novel_not_in_catalog	PNRC1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	578	2	NA	3	0	TRUE	NA	NA	0	C	coding	142	426	594	1019	45	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8470_CONTIG_1	19	-	1777	18	incomplete-splice_match	C3	ENST00000245907	5263	41	3185	301	5prime_fragment	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	B	coding	495	1485	293	1777	30	0.668	0.332	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1290_CONTIG_1	4	+	1324	9	incomplete-splice_match	ALB	ENST00000509063	1911	14	294	293	internal_fragment	FALSE	canonical	0	0	1158	2	NA	0	0	FALSE	NA	NA	0	C	coding	421	1263	61	1323	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2173_CONTIG_1	10	-	512	3	genic_intron	novelGene_245	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	55	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1704_CONTIG_1	9	+	686	6	full-splice_match	ORM1	ENST00000259396	802	6	45	71	multi-exon	FALSE	canonical	0	0	573	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	34	636	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8595_CONTIG_1	16	+	1122	3	full-splice_match	HP	ENST00000566821	3024	3	1903	-1	multi-exon	FALSE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	271	954	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4279_CONTIG_1	19	-	502	4	full-splice_match	C19orf70	ENST00000309324	896	4	392	2	multi-exon	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	A	coding	118	354	19	372	5	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_564_CONTIG_1	13	-	1496	14	full-splice_match	PCID2	ENST00000337344	1898	14	51	351	multi-exon	FALSE	canonical	0	0	62	2	NA	1	0	FALSE	NA	NA	0	C	coding	399	1197	27	1223	15	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2197_CONTIG_1	7	-	1034	7	incomplete-splice_match	HNRNPA2B1	ENST00000356674	1711	11	675	2	5prime_fragment	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7920_CONTIG_1	5	-	520	4	full-splice_match	TBCA	ENST00000380377	683	4	81	82	multi-exon	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_992_CONTIG_1	19	+	740	5	full-splice_match	UBA52	ENST00000442744	2845	5	-2	2107	multi-exon	FALSE	canonical	0	0	353	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	61	444	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7825_CONTIG_1	16	+	889	4	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	380	2	NA	0	0	TRUE	NA	NA	0	C	coding	40	120	274	393	25	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4011_CONTIG_1	17	-	1419	10	novel_in_catalog	ASGR2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	C	coding	287	861	409	1269	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5312_CONTIG_1	4	-	1518	10	full-splice_match	FGG	ENST00000404648	1760	10	193	49	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3151_CONTIG_1	11	-	803	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	96	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	255	765	39	803	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_179_CONTIG_1	3	+	1183	7	full-splice_match	HRG	ENST00000232003	2015	7	62	770	multi-exon	FALSE	canonical	0	0	759	2	NA	0	0	FALSE	NA	NA	0	C	coding	388	1164	19	1182	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7669_CONTIG_1	11	-	1032	8	novel_not_in_catalog	TUT1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	110	2	NA	0	0	TRUE	NA	NA	0	A	coding	304	912	29	940	20	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8552_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1817_CONTIG_1	5	-	2003	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	53	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6648_CONTIG_1	4	+	725	5	incomplete-splice_match	ALB	ENST00000415165	1483	11	754	4	internal_fragment	FALSE	canonical	0	0	564	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	119	538	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1906_CONTIG_1	16	+	396	3	full-splice_match	MT2A	ENST00000245185	786	3	385	5	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7626_CONTIG_1	10	-	912	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	165	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1370_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	50	162	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6000_CONTIG_1	2	-	886	6	novel_not_in_catalog	FN1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	28	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6591_CONTIG_1	4	-	1159	10	full-splice_match	CFI	ENST00000504853	2366	10	931	276	multi-exon	FALSE	canonical	0	0	144	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2617_CONTIG_1	3	+	1440	11	incomplete-splice_match	TF	ENST00000264998	2143	16	697	6	internal_fragment	FALSE	canonical	0	0	1240	2	NA	0	0	FALSE	NA	NA	0	C	coding	424	1272	1	1272	35	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7673_CONTIG_1	14	+	1540	5	full-splice_match	SERPINA3	ENST00000393080	1581	5	7	34	multi-exon	FALSE	canonical	0	0	1129	2	NA	1	0	FALSE	NA	NA	0	C	coding	420	1260	71	1330	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3650_CONTIG_1	3	+	2264	17	full-splice_match	TF	ENST00000402696	2968	17	437	267	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5377_CONTIG_1	17	-	1715	6	incomplete-splice_match	PLEKHM1	ENST00000581448	3292	11	1383	194	5prime_fragment	FALSE	canonical	0	0	848	2	NA	0	0	FALSE	NA	NA	0	A	coding	363	1089	431	1519	10	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1192_CONTIG_1	15	+	1605	8	incomplete-splice_match	SORD	ENST00000558580	1395	9	109	-319	internal_fragment	FALSE	canonical	0	0	842	2	NA	1	0	FALSE	NA	NA	0	C	coding	319	957	49	1005	50	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4553_CONTIG_1	3	+	1508	5	full-splice_match	AADAC	ENST00000232892	1642	5	80	54	multi-exon	FALSE	canonical	0	0	649	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2005_CONTIG_1	9	-	1262	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	0	multi-exon	TRUE	canonical	0	0	208	2	NA	1	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	10	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1463_CONTIG_1	14	-	943	5	full-splice_match	CINP	ENST00000216756	955	5	2	10	multi-exon	FALSE	canonical	0	0	46	2	NA	1	0	FALSE	NA	NA	0	A	coding	212	636	40	675	30	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7851_CONTIG_1	4	+	2048	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	45	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_617_CONTIG_1	16	-	638	3	novel_not_in_catalog	VKORC1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	180	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7187_CONTIG_1	19	+	1126	4	full-splice_match	APOE	ENST00000252486	1208	4	42	40	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5944_CONTIG_1	5	-	2250	3	genic	DHFR	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	2165	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4012_CONTIG_1	12	-	1354	7	incomplete-splice_match	PAH	ENST00000307000	2469	14	1061	54	5prime_fragment	FALSE	canonical	0	0	37	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.534	0.466	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4000_CONTIG_1	4	+	1536	11	full-splice_match	ALB	ENST00000511370	1519	11	15	-32	multi-exon	FALSE	canonical	0	0	1371	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	482	1345	25	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7656_CONTIG_1	4	+	1994	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1837	2	NA	0	0	TRUE	NA	NA	0	C	coding	590	1770	42	1811	40	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1359_CONTIG_1	16	+	1344	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	400	2	NA	1	0	FALSE	NA	NA	0	C	coding	383	1149	28	1176	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5373_CONTIG_1	4	+	2058	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	1	0	TRUE	NA	NA	0	C	coding	288	864	1004	1867	25	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7866_CONTIG_1	4	-	1570	6	full-splice_match	UGT2B15	ENST00000338206	2077	6	-24	531	multi-exon	FALSE	canonical	0	0	758	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4235_CONTIG_1	12	-	1553	3	novel_in_catalog	GYS2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	859	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1963_CONTIG_1	4	+	1616	8	full-splice_match	FGB	ENST00000302068	1975	8	63	296	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	1	1473	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5858_CONTIG_1	4	-	951	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	626	90	5prime_fragment	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	194	691	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_471_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4193_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8384_CONTIG_1	10	-	1165	9	full-splice_match	AKR1C2	ENST00000380753	3381	9	166	2050	multi-exon	FALSE	canonical	0	0	106	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	23	991	35	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3059_CONTIG_1	2	+	1600	14	full-splice_match	KYNU	ENST00000264170	1805	14	164	41	multi-exon	FALSE	canonical	0	0	1366	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1426_CONTIG_1	22	+	1510	11	full-splice_match	CRELD2	ENST00000404488	1577	11	28	39	multi-exon	FALSE	canonical	0	0	1263	2	NA	0	0	FALSE	NA	NA	0	A	coding	402	1206	108	1313	40	0.2	0.8	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5052_CONTIG_1	5	-	1285	6	incomplete-splice_match	C9	ENST00000263408	2713	11	803	625	5prime_fragment	FALSE	canonical	0	0	163	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.474	0.526	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7354_CONTIG_1	9	-	1737	9	novel_not_in_catalog	UBQLN1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	155	2	NA	0	0	TRUE	NA	NA	0	A	coding	403	1209	84	1292	15	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_485_CONTIG_1	4	+	1686	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	411	166	internal_fragment	FALSE	canonical	0	0	1531	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	9	1505	45	0.222	0.778	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_244_CONTIG_1	4	-	505	3	incomplete-splice_match	FGG	ENST00000405164	1539	10	784	250	internal_fragment	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	121	363	142	504	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6745_CONTIG_1	4	+	1584	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	446	233	internal_fragment	FALSE	canonical	0	0	1496	2	NA	1	0	FALSE	NA	NA	0	C	coding	463	1389	82	1470	50	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_964_CONTIG_1	4	+	1867	8	full-splice_match	FGB	ENST00000302068	1975	8	55	53	multi-exon	FALSE	canonical	0	0	1252	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2112_CONTIG_1	6	-	1861	11	incomplete-splice_match	MUT	ENST00000274813	3749	13	691	1197	5prime_fragment	FALSE	canonical	0	0	190	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_529_CONTIG_1	14	+	1571	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	12	6	multi-exon	FALSE	canonical	0	0	1135	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	68	1336	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2785_CONTIG_1	14	-	1014	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	443	multi-exon	FALSE	canonical	0	0	37	2	NA	1	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	10	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7234_CONTIG_1	10	+	1161	9	full-splice_match	AKR1C3	ENST00000380554	1807	9	621	25	multi-exon	TRUE	canonical	0	0	960	2	NA	0	0	FALSE	NA	NA	0	A	coding	323	969	32	1000	35	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8197_CONTIG_1	11	-	468	5	full-splice_match	RPS25	ENST00000527673	835	5	347	20	multi-exon	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	60	434	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8324_CONTIG_1	9	+	633	6	full-splice_match	ORM1	ENST00000259396	802	6	42	127	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	199	597	37	633	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5009_CONTIG_1	19	-	1179	8	incomplete-splice_match	SLC27A5	ENST00000601355	1987	10	763	45	5prime_fragment	FALSE	canonical	0	0	79	2	NA	0	0	FALSE	NA	NA	0	C	coding	351	1053	40	1092	20	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1360_CONTIG_1	4	-	1559	10	full-splice_match	FGG	ENST00000404648	1760	10	196	5	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5192_CONTIG_1	4	+	1548	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	504	211	internal_fragment	FALSE	canonical	0	0	1438	2	NA	1	0	FALSE	NA	NA	0	C	coding	463	1389	24	1412	10	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3411_CONTIG_1	4	+	1953	15	full-splice_match	ALB	ENST00000295897	2263	15	50	260	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1709_CONTIG_1	11	-	794	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	105	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	252	756	39	794	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7266_CONTIG_1	12	+	1127	8	incomplete-splice_match	HSP90B1	ENST00000299767	2858	18	1510	221	internal_fragment	FALSE	canonical	0	0	1054	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.588	0.412	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8558_CONTIG_1	4	+	510	5	incomplete-splice_match	ALB	ENST00000415165	1483	11	870	103	internal_fragment	FALSE	canonical	0	0	448	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	3	422	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8510_CONTIG_1	X	+	736	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1435	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	10	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5787_CONTIG_1	14	+	1705	4	incomplete-splice_match	PRKCH	ENST00000536400	968	6	234	-971	internal_fragment	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	A	coding	184	552	65	616	40	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1617_CONTIG_1	2	+	904	10	full-splice_match	UBE2F	ENST00000272930	2009	10	51	1054	multi-exon	FALSE	canonical	0	0	650	2	NA	0	0	FALSE	NA	NA	0	A	coding	185	555	144	698	15	0.244	0.756	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1951_CONTIG_1	1	+	1344	7	incomplete-splice_match	HAO2	ENST00000325945	1417	8	65	8	internal_fragment	FALSE	canonical	0	0	1008	2	NA	0	0	FALSE	NA	NA	0	B	coding	351	1053	9	1061	30	0.612	0.388	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8374_CONTIG_1	7	+	2110	16	incomplete-splice_match	MKLN1	ENST00000421797	2460	19	304	46	internal_fragment	FALSE	canonical	0	0	1918	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.32	0.68	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5700_CONTIG_1	2	+	1662	13	full-splice_match	ANXA4	ENST00000394295	2163	13	156	345	multi-exon	FALSE	canonical	0	0	998	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7078_CONTIG_1	18	-	731	5	full-splice_match	CYB5A	ENST00000340533	834	5	66	37	multi-exon	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	76	477	40	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_153_CONTIG_1	10	+	1641	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	26	multi-exon	FALSE	canonical	0	0	1330	2	NA	1	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5201_CONTIG_1	11	-	900	4	full-splice_match	APOA1	ENST00000236850	1227	4	327	0	multi-exon	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	40	840	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7127_CONTIG_1	3	+	1385	13	incomplete-splice_match	TBC1D23	ENST00000344949	3656	18	668	1603	internal_fragment	FALSE	canonical	0	0	1323	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4891_CONTIG_1	14	+	1480	3	novel_in_catalog	SERPINA5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	421	2	NA	1	0	FALSE	NA	NA	0	C	coding	172	516	86	601	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6224_CONTIG_1	3	+	334	2	full-splice_match	EIF1B	ENST00000462088	873	2	-15	554	multi-exon	FALSE	canonical	0	0	266	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6043_CONTIG_1	11	+	690	4	incomplete-splice_match	SERPING1	ENST00000340687	1719	8	2	1027	3prime_fragment	FALSE	canonical	0	0	610	2	NA	0	0	FALSE	NA	NA	0	C	coding	210	630	61	690	35	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5546_CONTIG_1	11	+	693	3	genic_intron	novelGene_351	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	640	2	NA	4	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.272	0.728	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7817_CONTIG_1	20	+	981	3	incomplete-splice_match	PCK1	ENST00000543666	1439	6	613	-155	internal_fragment	FALSE	canonical	0	0	198	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	162	650	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3827_CONTIG_1	4	+	1617	8	full-splice_match	FGB	ENST00000302068	1975	8	55	303	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1373_CONTIG_1	3	-	1911	3	full-splice_match	CISH	ENST00000348721	2043	3	58	74	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	C	coding	258	774	124	897	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8131_CONTIG_1	16	+	394	3	full-splice_match	MT1E	ENST00000306061	704	3	306	4	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2515_CONTIG_1	4	+	1559	8	full-splice_match	FGB	ENST00000302068	1975	8	61	355	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7237_CONTIG_1	19	+	864	4	full-splice_match	FTL	ENST00000331825	878	4	8	6	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2562_CONTIG_1	5	-	2042	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	14	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.282	0.718	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5703_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2544_CONTIG_1	4	+	1066	5	incomplete-splice_match	FGB	ENST00000509493	1164	6	194	-96	internal_fragment	FALSE	canonical	0	0	667	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6686_CONTIG_1	4	+	448	4	incomplete-splice_match	UGT2B7	ENST00000305231	1887	6	975	464	internal_fragment	FALSE	canonical	0	0	381	2	NA	0	0	FALSE	NA	NA	0	C	coding	144	432	17	448	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8681_CONTIG_1	15	+	947	4	full-splice_match	B2M	ENST00000558401	1715	4	36	732	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4850_CONTIG_1	4	-	1558	10	novel_in_catalog	ADH1C	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	89	2	NA	1	0	FALSE	NA	NA	0	C	coding	166	498	819	1316	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_647_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	17	-1	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6650_CONTIG_1	6	-	958	5	full-splice_match	SOD2	ENST00000538183	14266	5	87	13221	multi-exon	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	75	740	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6422_CONTIG_1	13	-	1140	5	incomplete-splice_match	CRYL1	ENST00000298248	1485	8	339	6	5prime_fragment	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	A	coding	193	579	103	681	20	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5722_CONTIG_1	19	+	1563	3	full-splice_match	C19orf82	ENST00000585797	1593	3	7	23	multi-exon	FALSE	canonical	0	0	324	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5181_CONTIG_1	11	+	942	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	46	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1024_CONTIG_1	3	+	1571	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	1	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_352_CONTIG_1	12	-	1640	2	full-splice_match	APOF	ENST00000541105	1682	2	0	42	multi-exon	FALSE	canonical	0	0	94	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	10	1056	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_935_CONTIG_1	10	+	1823	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	37	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	40	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7558_CONTIG_1	19	+	651	8	full-splice_match	RPL13A	ENST00000391857	1181	8	54	476	multi-exon	FALSE	canonical	0	0	547	2	NA	0	0	FALSE	NA	NA	0	C	coding	203	609	23	631	15	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2805_CONTIG_1	12	-	1879	10	full-splice_match	TNFRSF1A	ENST00000162749	2223	10	108	236	multi-exon	FALSE	canonical	0	0	231	2	NA	0	0	FALSE	NA	NA	0	A	coding	455	1365	193	1557	25	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2769_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	6	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_827_CONTIG_1	19	+	1667	9	novel_in_catalog	HNRNPM	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	B	coding	327	981	427	1407	15	0.652	0.348	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6061_CONTIG_1	16	+	1233	5	full-splice_match	HP	ENST00000398131	1252	5	17	2	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8746_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7214_CONTIG_1	9	-	1495	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	907	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4303_CONTIG_1	7	-	1776	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	33	multi-exon	FALSE	canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	45	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4662_CONTIG_1	9	+	727	6	full-splice_match	ORM1	ENST00000259396	802	6	42	33	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4773_CONTIG_1	7	-	2086	15	novel_not_in_catalog	CYP3A4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	174	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2798_CONTIG_1	14	+	1971	2	full-splice_match	RNASE4	ENST00000555835	1907	2	491	-555	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8027_CONTIG_1	4	+	309	3	incomplete-splice_match	ALB	ENST00000515133	665	4	2	354	3prime_fragment	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	C	coding	90	270	40	309	30	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3857_CONTIG_1	4	+	647	5	incomplete-splice_match	ALB	ENST00000415165	1483	11	349	487	internal_fragment	FALSE	canonical	0	0	544	2	NA	0	0	FALSE	NA	NA	0	C	coding	189	567	80	646	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1537_CONTIG_1	11	+	2090	5	full-splice_match	SC5D	ENST00000264027	2456	5	307	59	multi-exon	FALSE	canonical	0	0	511	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8576_CONTIG_1	5	-	2044	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	12	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.28	0.72	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4577_CONTIG_1	19	-	1786	2	full-splice_match	LRG1	ENST00000306390	3036	2	438	812	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	24	1064	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2339_CONTIG_1	4	+	2028	15	full-splice_match	ALB	ENST00000295897	2263	15	50	185	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_215_CONTIG_1	7	+	1285	5	incomplete-splice_match	TPST1	ENST00000304842	2116	6	796	35	internal_fragment	FALSE	canonical	0	0	771	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6362_CONTIG_1	7	+	1991	5	incomplete-splice_match	CALU	ENST00000249364	3357	7	433	933	internal_fragment	FALSE	canonical	0	0	512	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1573_CONTIG_1	12	+	1406	7	full-splice_match	KRT18	ENST00000388835	1562	7	153	3	multi-exon	FALSE	canonical	0	0	1229	2	NA	0	0	FALSE	NA	NA	0	C	coding	430	1290	58	1347	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6762_CONTIG_1	6	+	1652	14	incomplete-splice_match	CFB	ENST00000425368	2862	18	1181	29	internal_fragment	FALSE	canonical	0	0	1471	2	NA	0	0	FALSE	NA	NA	0	C	coding	496	1488	137	1624	40	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4927_CONTIG_1	4	+	1676	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	382	205	internal_fragment	FALSE	canonical	0	0	1560	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	38	1534	0	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6755_CONTIG_1	4	+	2000	15	full-splice_match	ALB	ENST00000295897	2263	15	48	215	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2499_CONTIG_1	4	+	991	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	348	144	internal_fragment	FALSE	canonical	0	0	970	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	81	944	60	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_499_CONTIG_1	17	+	1232	5	novel_not_in_catalog	G6PC	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1204	2	NA	1	1	TRUE	NA	NA	0	A	coding	151	453	73	525	25	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8265_CONTIG_1	19	+	1851	2	full-splice_match	IER2	ENST00000587885	1291	2	42	-602	multi-exon	FALSE	canonical	0	0	96	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	187	855	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6334_CONTIG_1	15	+	934	4	full-splice_match	B2M	ENST00000558401	1715	4	36	745	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8364_CONTIG_1	19	-	1146	6	novel_not_in_catalog	SULT2A1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	194	2	NA	0	0	TRUE	NA	NA	0	C	coding	113	339	454	792	10	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8171_CONTIG_1	7	+	803	3	full-splice_match	MRPL32	ENST00000223324	1035	3	177	55	multi-exon	FALSE	canonical	0	0	322	2	NA	0	0	FALSE	NA	NA	0	A	coding	135	405	170	574	50	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1451_CONTIG_1	11	-	400	4	full-splice_match	APOA1	ENST00000236850	1227	4	269	558	multi-exon	FALSE	canonical	0	0	77	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	98	400	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1838_CONTIG_1	19	+	1394	2	antisense	novelGene_C3_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	723	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	80	0.28	0.72	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_99_CONTIG_1	1	-	467	6	incomplete-splice_match	RAB13	ENST00000368575	1176	8	97	612	internal_fragment	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	A	coding	149	447	20	466	30	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2664_CONTIG_1	1	+	1358	7	novel_in_catalog	HAO2	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1018	2	NA	0	0	FALSE	NA	NA	0	B	coding	290	870	202	1071	25	0.616	0.384	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3796_CONTIG_1	4	+	1679	8	novel_not_in_catalog	NUDT9	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1186	2	NA	1	0	FALSE	NA	NA	0	A	coding	293	879	484	1362	25	0.258	0.742	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4342_CONTIG_1	1	+	915	2	full-splice_match	APCS	ENST00000255040	926	2	1	10	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2022_CONTIG_1	13	-	804	6	full-splice_match	TPT1	ENST00000530705	1028	6	187	37	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	115	630	35	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6987_CONTIG_1	X	+	1029	2	full-splice_match	RAB9A	ENST00000243325	737	2	-39	-253	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	169	771	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6971_CONTIG_1	2	+	661	6	incomplete-splice_match	SSB	ENST00000260956	1709	12	67	981	3prime_fragment	FALSE	canonical	0	0	560	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5660_CONTIG_1	4	+	1453	8	full-splice_match	FGB	ENST00000302068	1975	8	63	459	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	coding	484	1452	1	1452	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2019_CONTIG_1	12	-	1001	7	full-splice_match	C1R	ENST00000542220	1257	7	167	89	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	316	948	53	1000	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_404_CONTIG_1	16	-	763	3	full-splice_match	VKORC1	ENST00000394975	1012	3	221	28	multi-exon	FALSE	canonical	0	0	180	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	8	496	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_92_CONTIG_1	4	+	1862	8	full-splice_match	FGB	ENST00000302068	1975	8	59	54	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8488_CONTIG_1	5	+	1314	3	full-splice_match	FAM174A	ENST00000312637	1356	3	42	0	multi-exon	FALSE	canonical	0	0	753	2	NA	1	0	FALSE	NA	NA	0	A	coding	190	570	185	754	20	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4022_CONTIG_1	4	-	1034	6	incomplete-splice_match	FGG	ENST00000404648	1760	10	722	4	5prime_fragment	FALSE	canonical	0	0	50	2	NA	0	0	FALSE	NA	NA	0	C	coding	148	444	386	829	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5603_CONTIG_1	19	+	514	3	genic_intron	novelGene_41	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	443	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7716_CONTIG_1	3	+	344	4	incomplete-splice_match	TF	ENST00000493011	999	5	50	605	3prime_fragment	FALSE	canonical	0	0	323	2	NA	0	0	FALSE	NA	NA	0	C	coding	71	213	131	343	20	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1570_CONTIG_1	14	+	2033	5	full-splice_match	SERPINA5	ENST00000554866	2211	5	68	110	multi-exon	FALSE	canonical	0	0	1084	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	47	1264	35	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7154_CONTIG_1	7	+	437	4	full-splice_match	IGFBP1	ENST00000275525	1653	4	578	638	multi-exon	FALSE	canonical	0	0	366	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	139	435	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8738_CONTIG_1	1	-	2020	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-11	419	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	coding	508	1524	62	1585	55	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8391_CONTIG_1	8	+	570	5	incomplete-splice_match	POP1	ENST00000401707	4719	16	13	4136	3prime_fragment	FALSE	canonical	0	0	554	2	NA	0	0	FALSE	NA	NA	0	A	coding	167	501	69	569	60	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1999_CONTIG_1	2	-	1221	9	incomplete-splice_match	HSPD1	ENST00000388968	2455	12	207	1027	internal_fragment	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	B	coding	376	1128	92	1219	45	0.702	0.298	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6182_CONTIG_1	19	+	1744	4	incomplete-splice_match	SAMD4B	ENST00000314471	4519	16	2718	57	internal_fragment	FALSE	canonical	0	0	373	2	NA	0	0	FALSE	NA	NA	0	B	coding	129	387	13	399	50	0.516	0.484	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5895_CONTIG_1	19	+	1006	5	full-splice_match	PGLS	ENST00000252603	1028	5	23	-1	multi-exon	FALSE	canonical	0	0	660	2	NA	0	0	FALSE	NA	NA	0	C	coding	258	774	22	795	5	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4860_CONTIG_1	10	-	916	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	161	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4681_CONTIG_1	8	-	979	3	novel_not_in_catalog	CTSB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5737_CONTIG_1	4	-	1578	13	full-splice_match	ANXA5	ENST00000296511	1762	13	138	46	multi-exon	FALSE	canonical	0	0	113	2	NA	1	0	FALSE	NA	NA	0	C	coding	320	960	149	1108	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4539_CONTIG_1	1	-	2099	11	full-splice_match	CERS2	ENST00000368954	2504	11	310	95	multi-exon	FALSE	canonical	0	0	75	2	NA	1	0	FALSE	NA	NA	0	C	coding	380	1140	77	1216	60	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7681_CONTIG_1	10	-	917	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	160	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5097_CONTIG_1	11	-	1562	10	full-splice_match	HPX	ENST00000265983	1652	10	71	19	multi-exon	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	31	1416	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7842_CONTIG_1	4	+	1435	11	full-splice_match	ALB	ENST00000511370	1519	11	76	8	multi-exon	FALSE	canonical	0	0	1310	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	421	1284	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5527_CONTIG_1	19	-	1667	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	97	multi-exon	FALSE	canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	20	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5484_CONTIG_1	14	+	2368	3	novel_in_catalog	MAPK1IP1L	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	846	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6902_CONTIG_1	19	+	1162	4	full-splice_match	APOE	ENST00000252486	1208	4	42	4	multi-exon	FALSE	canonical	0	0	305	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3893_CONTIG_1	5	-	1587	6	incomplete-splice_match	FASTKD3	ENST00000264669	2402	7	811	4	5prime_fragment	FALSE	canonical	0	0	764	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_516_CONTIG_1	4	+	1963	15	full-splice_match	ALB	ENST00000295897	2263	15	144	156	multi-exon	FALSE	canonical	0	0	1798	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	276	1772	25	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6788_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3361_CONTIG_1	11	-	2083	14	incomplete-splice_match	COPB1	ENST00000439561	3382	22	1246	53	5prime_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.66	0.34	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3370_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4496_CONTIG_1	16	+	1094	3	full-splice_match	HP	ENST00000566821	3024	3	1911	19	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7764_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_467_CONTIG_1	4	+	1608	3	full-splice_match	CISD2	ENST00000273986	2327	3	43	676	multi-exon	FALSE	canonical	0	0	382	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2223_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8109_CONTIG_1	4	+	2199	15	full-splice_match	ALB	ENST00000295897	2263	15	50	14	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5743_CONTIG_1	9	-	2004	7	full-splice_match	STOM	ENST00000286713	3010	7	-39	1045	multi-exon	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	C	coding	193	579	343	921	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2881_CONTIG_1	1	-	1850	5	full-splice_match	AGT	ENST00000366667	2291	5	173	268	multi-exon	FALSE	canonical	0	0	39	2	NA	1	0	FALSE	NA	NA	0	C	coding	485	1455	43	1497	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6309_CONTIG_1	6	+	537	6	full-splice_match	RPS18	ENST00000439602	613	6	67	9	multi-exon	FALSE	canonical	0	0	426	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	44	499	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6105_CONTIG_1	19	+	1506	13	novel_in_catalog	HPN	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	1422	2	NA	1	0	FALSE	NA	NA	0	B	coding	417	1251	208	1458	10	0.674	0.326	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5734_CONTIG_1	17	-	892	4	full-splice_match	GABARAP	ENST00000302386	1634	4	331	411	multi-exon	FALSE	canonical	0	0	199	2	NA	1	0	FALSE	NA	NA	0	C	coding	117	351	110	460	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4902_CONTIG_1	12	+	1436	4	full-splice_match	PEBP1	ENST00000261313	1697	4	256	5	multi-exon	FALSE	canonical	0	0	442	2	NA	1	0	FALSE	NA	NA	0	C	coding	187	561	97	657	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5695_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	50	165	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4475_CONTIG_1	6	+	715	6	full-splice_match	RPL10A	ENST00000322203	716	6	-4	5	multi-exon	FALSE	canonical	0	0	514	2	NA	0	0	FALSE	NA	NA	0	C	coding	217	651	32	682	5	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2885_CONTIG_1	4	-	1545	10	full-splice_match	FGG	ENST00000404648	1760	10	193	22	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7277_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	50	163	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7921_CONTIG_1	16	-	428	4	full-splice_match	TCEB2	ENST00000409906	991	4	25	538	multi-exon	FALSE	canonical	0	0	36	2	NA	1	0	FALSE	NA	NA	0	A	coding	118	354	34	387	5	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4961_CONTIG_1	16	-	503	2	genic_intron	novelGene_189	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4695_CONTIG_1	10	-	1928	2	novel_in_catalog	IDE	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	969	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.302	0.698	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8588_CONTIG_1	4	-	1301	7	full-splice_match	HSD17B11	ENST00000358290	1885	7	209	375	multi-exon	FALSE	canonical	0	0	317	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6004_CONTIG_1	14	+	1561	14	incomplete-splice_match	MTHFD1	ENST00000216605	3135	28	1554	20	internal_fragment	FALSE	canonical	0	0	1336	2	NA	1	0	FALSE	NA	NA	0	B	coding	366	1098	232	1329	50	0.666	0.334	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3909_CONTIG_1	11	-	432	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	467	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	39	431	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6541_CONTIG_1	9	-	1745	3	full-splice_match	BAAT	ENST00000395051	2252	3	12	495	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	60	1313	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1191_CONTIG_1	1	-	987	6	incomplete-splice_match	ERI3	ENST00000537474	1067	7	78	2	5prime_fragment	FALSE	canonical	0	0	117	2	NA	0	0	FALSE	NA	NA	0	A	coding	160	480	43	522	15	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1040_CONTIG_1	16	+	1231	5	full-splice_match	HP	ENST00000398131	1252	5	17	4	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8557_CONTIG_1	4	+	2028	15	full-splice_match	ALB	ENST00000295897	2263	15	50	185	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2272_CONTIG_1	1	+	490	4	novel_in_catalog	EPHX1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	449	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	43	489	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5105_CONTIG_1	17	-	1626	8	full-splice_match	VTN	ENST00000226218	2149	8	515	8	multi-exon	FALSE	canonical	0	0	168	2	NA	1	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6101_CONTIG_1	4	-	1114	4	full-splice_match	CXCL2	ENST00000508487	1218	4	98	6	multi-exon	FALSE	canonical	0	0	175	2	NA	1	0	FALSE	NA	NA	0	C	coding	107	321	76	396	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6198_CONTIG_1	3	-	762	3	full-splice_match	CRBN	ENST00000488263	4528	3	2965	801	multi-exon	FALSE	canonical	0	0	396	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7811_CONTIG_1	5	-	1993	5	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.512	0.488	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2284_CONTIG_1	6	-	820	7	full-splice_match	GSTA1	ENST00000334575	1019	7	83	116	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	74	739	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3713_CONTIG_1	12	-	1190	14	full-splice_match	HPD	ENST00000289004	1419	14	0	229	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	384	1152	37	1188	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6240_CONTIG_1	4	+	2033	15	full-splice_match	ALB	ENST00000295897	2263	15	48	182	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3977_CONTIG_1	10	+	1652	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	15	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4482_CONTIG_1	4	+	2214	15	full-splice_match	ALB	ENST00000295897	2263	15	48	1	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2633_CONTIG_1	20	-	1429	2	novel_not_in_catalog	SLC23A2	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	1130	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4114_CONTIG_1	9	-	668	4	novel_not_in_catalog	AGPAT2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	253	2	NA	0	0	TRUE	NA	NA	0	C	coding	199	597	72	668	40	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3046_CONTIG_1	3	-	1288	9	full-splice_match	LZTFL1	ENST00000411866	986	9	42	-344	multi-exon	FALSE	canonical	0	0	99	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6225_CONTIG_1	6	-	1541	8	full-splice_match	HLA-C	ENST00000376228	1536	8	-4	-1	multi-exon	FALSE	canonical	0	0	92	2	NA	1	0	FALSE	NA	NA	0	C	coding	366	1098	20	1117	10	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6557_CONTIG_1	11	+	728	5	full-splice_match	TMEM179B	ENST00000333449	1023	5	-17	312	multi-exon	FALSE	canonical	0	0	520	2	NA	0	0	FALSE	NA	NA	0	C	coding	219	657	23	679	15	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3621_CONTIG_1	18	+	616	4	full-splice_match	TTR	ENST00000237014	957	4	151	190	multi-exon	FALSE	canonical	0	0	362	2	NA	1	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4839_CONTIG_1	11	-	1611	10	incomplete-splice_match	COPB1	ENST00000439561	3382	22	1812	-41	5prime_fragment	FALSE	canonical	0	0	50	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.676	0.324	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_17_CONTIG_1	12	+	1275	3	incomplete-splice_match	C1S	ENST00000443875	2550	11	1241	34	internal_fragment	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	B	coding	296	888	40	927	40	0.528	0.472	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1782_CONTIG_1	11	-	471	6	incomplete-splice_match	RAB6A	ENST00000536566	1102	8	108	523	5prime_fragment	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_721_CONTIG_1	15	-	1870	15	novel_not_in_catalog	TMEM87A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	161	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6135_CONTIG_1	20	-	1802	2	genic_intron	novelGene_374	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	604	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4495_CONTIG_1	10	+	1253	10	full-splice_match	VDAC2	ENST00000332211	1557	10	80	224	multi-exon	FALSE	canonical	0	0	926	2	NA	2	0	FALSE	NA	NA	0	C	coding	283	849	167	1015	30	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7155_CONTIG_1	17	+	1160	2	novel_in_catalog	LIG3	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	741	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.33	0.67	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2743_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	49	169	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	45	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7139_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	50	165	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2141_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	7	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5423_CONTIG_1	8	-	975	6	full-splice_match	HRSP12	ENST00000254878	1057	6	66	16	multi-exon	FALSE	canonical	0	0	144	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6643_CONTIG_1	19	-	1383	13	incomplete-splice_match	C3	ENST00000245907	5263	41	3743	137	5prime_fragment	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	B	coding	390	1170	170	1339	15	0.658	0.342	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7368_CONTIG_1	14	+	2324	4	full-splice_match	CHURC1	ENST00000552002	2566	4	34	208	multi-exon	FALSE	canonical	0	0	284	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	75	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8047_CONTIG_1	16	+	1119	3	full-splice_match	HP	ENST00000566821	3024	3	1906	-1	multi-exon	FALSE	canonical	0	0	175	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	268	951	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4832_CONTIG_1	5	-	1765	8	novel_not_in_catalog	C5orf45	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	78	2	NA	1	0	TRUE	NA	NA	0	A	coding	191	573	13	585	40	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1743_CONTIG_1	18	+	628	6	novel_not_in_catalog	TTR	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	600	2	NA	2	0	TRUE	NA	NA	0	C	coding	147	441	27	467	45	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3757_CONTIG_1	11	-	1568	10	full-splice_match	HPX	ENST00000265983	1652	10	77	7	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2210_CONTIG_1	14	-	1732	2	full-splice_match	ZFP36L1	ENST00000439696	3190	2	176	1282	multi-exon	FALSE	canonical	0	0	183	2	NA	2	0	FALSE	NA	NA	0	C	coding	338	1014	127	1140	10	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6999_CONTIG_1	12	-	1982	18	novel_in_catalog	LTA4H	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	238	2	NA	0	0	FALSE	NA	NA	0	A	coding	532	1596	80	1675	20	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5400_CONTIG_1	2	+	339	3	full-splice_match	VAMP8	ENST00000263864	774	3	95	340	multi-exon	FALSE	canonical	0	0	223	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_234_CONTIG_1	4	-	1839	9	full-splice_match	ADH4	ENST00000265512	1993	9	-18	172	multi-exon	FALSE	canonical	0	0	111	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3102_CONTIG_1	10	-	901	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	176	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	30	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5126_CONTIG_1	10	-	405	2	novel_not_in_catalog	CUEDC2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	80	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6403_CONTIG_1	12	+	461	5	full-splice_match	MYL6	ENST00000551589	1438	5	-10	987	multi-exon	FALSE	canonical	0	0	392	2	NA	0	0	FALSE	NA	NA	0	C	coding	139	417	44	460	40	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8177_CONTIG_1	9	-	1913	7	novel_in_catalog	TLE1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	785	2	NA	0	0	FALSE	NA	NA	0	A	coding	200	600	762	1361	30	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_521_CONTIG_1	10	-	1719	11	full-splice_match	TIAL1	ENST00000489822	2222	11	455	48	multi-exon	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2826_CONTIG_1	7	-	1349	3	novel_in_catalog	SLC25A13	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4363_CONTIG_1	10	+	1521	8	novel_not_in_catalog	CYP2C9	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	980	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3997_CONTIG_1	10	-	331	3	incomplete-splice_match	RBP4	ENST00000371464	1068	6	-9	746	internal_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	82	246	84	329	10	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1590_CONTIG_1	4	+	2040	15	full-splice_match	ALB	ENST00000295897	2263	15	50	173	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	55	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6636_CONTIG_1	4	-	1609	2	novel_in_catalog	UGDH	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	113	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3026_CONTIG_1	10	-	918	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	159	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6087_CONTIG_1	3	+	731	6	novel_not_in_catalog	LEKR1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	543	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3803_CONTIG_1	2	-	1722	14	full-splice_match	HIBCH	ENST00000359678	1939	14	216	1	multi-exon	FALSE	canonical	0	0	114	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6619_CONTIG_1	19	+	788	4	full-splice_match	FTL	ENST00000331825	878	4	8	82	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8201_CONTIG_1	3	-	1549	5	full-splice_match	TM4SF1	ENST00000305366	1771	5	215	7	multi-exon	FALSE	canonical	0	0	280	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2831_CONTIG_1	X	-	1662	11	full-splice_match	GPKOW	ENST00000156109	1735	11	63	10	multi-exon	FALSE	canonical	0	0	192	2	NA	0	0	FALSE	NA	NA	0	A	coding	476	1428	17	1444	55	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3010_CONTIG_1	3	+	1761	15	novel_in_catalog	IL17RC	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1132	2	NA	0	0	FALSE	NA	NA	0	A	coding	581	1743	19	1761	40	0.248	0.752	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6409_CONTIG_1	20	+	277	2	genic_intron	novelGene_30	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.23	0.77	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7070_CONTIG_1	17	-	1173	8	full-splice_match	APOH	ENST00000205948	1176	8	7	-4	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7415_CONTIG_1	20	+	1494	12	novel_in_catalog	CTSA	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1054	2	NA	0	0	FALSE	NA	NA	0	B	coding	289	867	269	1135	25	0.664	0.336	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6722_CONTIG_1	13	+	687	7	genic_intron	novelGene_279	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	539	2	NA	15	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1634_CONTIG_1	6	-	1714	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	557	32	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	63	1448	45	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_319_CONTIG_1	17	+	682	6	full-splice_match	RPL19	ENST00000225430	732	6	34	16	multi-exon	FALSE	canonical	0	0	495	2	NA	0	0	FALSE	NA	NA	0	C	coding	196	588	29	616	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6985_CONTIG_1	14	-	1364	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	40	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_698_CONTIG_1	4	+	1442	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1372	2	NA	0	0	TRUE	NA	NA	0	C	coding	35	105	482	586	30	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8327_CONTIG_1	11	+	523	4	full-splice_match	APOC3	ENST00000227667	550	4	15	12	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_741_CONTIG_1	4	+	1931	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1773	2	NA	1	0	TRUE	NA	NA	0	C	coding	337	1011	40	1050	40	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1164_CONTIG_1	10	-	822	2	genic_intron	novelGene_529	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	A	coding	124	372	433	804	25	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4824_CONTIG_1	15	-	2181	9	full-splice_match	GATM	ENST00000396659	2597	9	249	167	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7483_CONTIG_1	16	+	298	3	novel_not_in_catalog	MT1E	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5296_CONTIG_1	1	-	470	4	full-splice_match	APOA2	ENST00000367990	474	4	4	0	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	55	354	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8321_CONTIG_1	5	-	2055	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	1	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.27	0.73	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1969_CONTIG_1	9	-	2585	5	full-splice_match	AK3	ENST00000381809	2736	5	116	35	multi-exon	FALSE	canonical	0	0	266	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7073_CONTIG_1	7	-	2032	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	81	40	multi-exon	FALSE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5928_CONTIG_1	19	-	844	6	full-splice_match	ETFB	ENST00000309244	900	6	30	26	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	255	765	63	827	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6892_CONTIG_1	16	+	732	3	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	113	2	NA	0	0	TRUE	NA	NA	0	C	coding	184	552	30	581	15	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7527_CONTIG_1	9	+	764	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	15	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5689_CONTIG_1	4	-	1553	10	full-splice_match	FGG	ENST00000404648	1760	10	193	14	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2373_CONTIG_1	4	+	2024	15	full-splice_match	ALB	ENST00000295897	2263	15	50	189	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3468_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_851_CONTIG_1	1	+	2607	16	full-splice_match	SCP2	ENST00000371514	2811	16	60	144	multi-exon	FALSE	canonical	0	0	1656	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4327_CONTIG_1	1	-	471	4	full-splice_match	APOA2	ENST00000367990	474	4	0	3	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3013_CONTIG_1	3	-	1202	12	full-splice_match	ATG3	ENST00000283290	1570	12	326	42	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3795_CONTIG_1	4	+	2022	15	full-splice_match	ALB	ENST00000295897	2263	15	50	191	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3392_CONTIG_1	2	-	934	5	novel_not_in_catalog	ADI1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	158	2	NA	0	0	TRUE	NA	NA	0	C	coding	188	564	39	602	35	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1622_CONTIG_1	14	+	1574	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	1	multi-exon	FALSE	canonical	0	0	1133	2	NA	1	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	10	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_612_CONTIG_1	3	+	1866	11	full-splice_match	EIF4A2	ENST00000323963	1919	11	30	23	multi-exon	FALSE	canonical	0	0	1113	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3207_CONTIG_1	2	-	1601	6	novel_in_catalog	TBC1D8	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	259	2	NA	1	0	FALSE	NA	NA	0	A	coding	399	1197	133	1329	15	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7488_CONTIG_1	8	-	868	5	novel_not_in_catalog	CLU	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	316	2	NA	0	0	TRUE	NA	NA	0	C	coding	283	849	1	849	10	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6743_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	455	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	47	1006	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8306_CONTIG_1	9	-	680	5	incomplete-splice_match	KIAA0020	ENST00000397885	2321	18	1584	57	5prime_fragment	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	C	coding	123	369	199	567	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4820_CONTIG_1	3	+	1601	12	incomplete-splice_match	ITIH1	ENST00000537050	2486	18	848	37	internal_fragment	FALSE	canonical	0	0	1358	2	NA	0	0	FALSE	NA	NA	0	C	coding	465	1395	91	1485	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6237_CONTIG_1	16	+	1121	6	novel_not_in_catalog	HSD17B2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	912	2	NA	0	0	TRUE	NA	NA	0	C	coding	340	1020	85	1104	40	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7273_CONTIG_1	4	+	1134	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	349	0	internal_fragment	FALSE	canonical	0	0	969	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	80	943	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8731_CONTIG_1	9	-	833	2	novel_in_catalog	PTPRD	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	409	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7548_CONTIG_1	9	+	756	6	full-splice_match	ORM1	ENST00000259396	802	6	42	4	multi-exon	FALSE	canonical	0	0	576	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3598_CONTIG_1	6	+	956	5	full-splice_match	TMEM14A	ENST00000211314	992	5	4	32	multi-exon	FALSE	canonical	0	0	409	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2031_CONTIG_1	1	-	1916	4	full-splice_match	ARPC5	ENST00000359856	1838	4	-57	-21	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_491_CONTIG_1	12	+	1264	3	novel_not_in_catalog	METTL7A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1233	2	NA	1	0	TRUE	NA	NA	0	B	coding	244	732	21	752	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_150_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	17	-1	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	5	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7990_CONTIG_1	4	+	1913	15	full-splice_match	ALB	ENST00000295897	2263	15	48	302	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	70	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6155_CONTIG_1	12	+	1415	4	incomplete-splice_match	HSD17B6	ENST00000322165	1512	5	91	6	internal_fragment	FALSE	canonical	0	0	755	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	20	970	10	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7006_CONTIG_1	3	+	528	3	novel_in_catalog	ITIH3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	283	2	NA	0	0	FALSE	NA	NA	0	B	coding	134	402	9	410	25	0.484	0.516	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7310_CONTIG_1	14	-	1775	7	full-splice_match	RDH11	ENST00000381346	2588	7	79	734	multi-exon	FALSE	canonical	0	0	106	2	NA	0	0	FALSE	NA	NA	0	C	coding	318	954	33	986	40	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6428_CONTIG_1	14	+	958	11	full-splice_match	PSME1	ENST00000206451	1006	11	39	9	multi-exon	FALSE	canonical	0	0	735	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	67	813	20	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1755_CONTIG_1	1	-	472	4	full-splice_match	APOA2	ENST00000367990	474	4	0	2	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_49_CONTIG_1	17	-	1591	8	full-splice_match	VTN	ENST00000226218	2149	8	516	42	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	104	1537	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6677_CONTIG_1	9	-	676	6	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	192	576	92	667	40	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3538_CONTIG_1	14	+	1035	9	incomplete-splice_match	MTHFD1	ENST00000216605	3135	28	2047	53	internal_fragment	FALSE	canonical	0	0	843	2	NA	0	0	FALSE	NA	NA	0	B	coding	259	777	60	836	15	0.706	0.294	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1267_CONTIG_1	4	+	1773	8	full-splice_match	FGB	ENST00000302068	1975	8	57	145	multi-exon	FALSE	canonical	0	0	1250	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_705_CONTIG_1	4	+	1918	4	incomplete-splice_match	GBA3	ENST00000511446	2018	5	62	38	internal_fragment	FALSE	canonical	0	0	1149	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1848_CONTIG_1	X	+	1561	11	novel_not_in_catalog	NONO	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1254	2	NA	0	0	TRUE	NA	NA	0	B	coding	411	1233	154	1386	25	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6092_CONTIG_1	11	-	873	4	full-splice_match	APOA1	ENST00000236850	1227	4	326	28	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	41	841	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3641_CONTIG_1	7	-	1799	8	novel_in_catalog	CYP3A5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	755	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4392_CONTIG_1	4	+	381	4	full-splice_match	ALB	ENST00000515133	665	4	2	282	multi-exon	FALSE	canonical	0	0	309	2	NA	0	0	FALSE	NA	NA	0	C	coding	114	342	40	381	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3333_CONTIG_1	10	+	1636	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	31	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	55	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7279_CONTIG_1	2	-	1079	9	incomplete-splice_match	HSPD1	ENST00000388968	2455	12	207	1169	internal_fragment	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	B	coding	329	987	92	1078	40	0.738	0.262	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2693_CONTIG_1	4	+	1809	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1649	2	NA	0	0	TRUE	NA	NA	0	C	coding	528	1584	40	1623	35	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5134_CONTIG_1	8	-	1660	9	full-splice_match	CLU	ENST00000560366	2841	9	107	1074	multi-exon	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	82	1425	10	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1250_CONTIG_1	11	-	1548	10	full-splice_match	HPX	ENST00000265983	1652	10	51	53	multi-exon	FALSE	canonical	0	0	133	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	51	1436	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5496_CONTIG_1	19	-	1338	2	full-splice_match	LRG1	ENST00000306390	3036	2	438	1260	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	24	1064	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4261_CONTIG_1	X	-	848	7	full-splice_match	RPS4X	ENST00000316084	1526	7	82	596	multi-exon	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	C	coding	263	789	24	812	45	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6854_CONTIG_1	4	+	2020	15	full-splice_match	ALB	ENST00000295897	2263	15	50	193	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2594_CONTIG_1	11	+	2205	13	full-splice_match	CAT	ENST00000241052	2302	13	13	84	multi-exon	FALSE	canonical	0	0	1594	2	NA	1	0	FALSE	NA	NA	0	C	coding	527	1581	77	1657	30	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7381_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6674_CONTIG_1	11	-	923	4	full-splice_match	APOA1	ENST00000236850	1227	4	294	10	multi-exon	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	73	873	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1967_CONTIG_1	3	-	2066	9	incomplete-splice_match	SUCLG2	ENST00000307227	2352	11	254	32	5prime_fragment	FALSE	canonical	0	0	100	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.52	0.48	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5051_CONTIG_1	12	-	358	4	incomplete-splice_match	BIN2	ENST00000544402	1990	13	1459	173	5prime_fragment	FALSE	canonical	0	0	131	2	NA	0	0	FALSE	NA	NA	0	A	coding	64	192	120	311	30	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3234_CONTIG_1	12	-	1041	8	incomplete-splice_match	A2M	ENST00000318602	4844	36	3317	486	internal_fragment	FALSE	canonical	0	0	22	2	NA	0	0	FALSE	NA	NA	0	B	coding	143	429	613	1041	35	0.682	0.318	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1672_CONTIG_1	4	+	2036	15	full-splice_match	ALB	ENST00000295897	2263	15	50	177	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_998_CONTIG_1	9	-	1558	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	844	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	50	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4901_CONTIG_1	16	+	1199	5	full-splice_match	HP	ENST00000398131	1252	5	17	36	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4096_CONTIG_1	1	-	448	4	full-splice_match	APOA2	ENST00000367990	474	4	0	26	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2977_CONTIG_1	5	+	523	3	incomplete-splice_match	FST	ENST00000256759	2519	6	925	1071	internal_fragment	FALSE	canonical	0	0	410	2	NA	0	0	FALSE	NA	NA	0	A	coding	48	144	347	490	55	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_403_CONTIG_1	14	+	1563	13	novel_in_catalog	MTHFD1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1320	2	NA	0	0	FALSE	NA	NA	0	B	coding	366	1098	216	1313	20	0.68	0.32	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5477_CONTIG_1	16	+	1120	3	full-splice_match	HP	ENST00000566821	3024	3	1905	-1	multi-exon	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	269	952	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7407_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4441_CONTIG_1	10	-	1626	13	novel_not_in_catalog	MMS19	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	149	2	NA	0	0	TRUE	NA	NA	0	A	coding	412	1236	155	1390	20	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5513_CONTIG_1	1	-	854	2	genic	RP11-544M22.13	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	581	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4056_CONTIG_1	20	+	875	7	novel_not_in_catalog	OSBPL2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	527	2	NA	0	0	TRUE	NA	NA	0	A	coding	129	387	166	552	55	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6907_CONTIG_1	14	-	1258	5	novel_not_in_catalog	SERPINA6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	A	coding	219	657	85	741	20	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3533_CONTIG_1	11	-	829	6	full-splice_match	COMMD9	ENST00000263401	1745	6	1	915	multi-exon	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	A	coding	198	594	17	610	25	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6825_CONTIG_1	1	-	1659	9	incomplete-splice_match	HMGCS2	ENST00000369406	2428	10	373	396	5prime_fragment	FALSE	canonical	0	0	236	2	NA	0	0	FALSE	NA	NA	0	C	coding	395	1185	17	1201	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3693_CONTIG_1	3	+	1937	7	full-splice_match	HRG	ENST00000232003	2015	7	59	19	multi-exon	FALSE	canonical	0	0	762	2	NA	0	0	FALSE	NA	NA	0	C	coding	525	1575	22	1596	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8008_CONTIG_1	3	+	939	2	genic_intron	novelGene_823	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_207_CONTIG_1	1	+	599	6	full-splice_match	MGST3	ENST00000367889	1015	6	402	14	multi-exon	FALSE	canonical	0	0	360	2	NA	1	0	FALSE	NA	NA	0	C	coding	152	456	39	494	30	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3876_CONTIG_1	3	-	1209	10	novel_in_catalog	CD47	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	139	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1637_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7105_CONTIG_1	21	+	1190	3	full-splice_match	CBR1	ENST00000290349	1293	3	83	20	multi-exon	FALSE	canonical	0	0	489	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	93	923	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4601_CONTIG_1	4	+	272	2	incomplete-splice_match	ALB	ENST00000510166	532	4	246	14	internal_fragment	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_709_CONTIG_1	6	+	1086	5	novel_not_in_catalog	BTN2A2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	796	2	NA	0	0	TRUE	NA	NA	0	A	coding	250	750	117	866	20	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7855_CONTIG_1	6	+	887	4	novel_in_catalog	ARG1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	338	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7047_CONTIG_1	19	+	1166	4	full-splice_match	APOE	ENST00000252486	1208	4	42	0	multi-exon	FALSE	canonical	0	0	305	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	0	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7829_CONTIG_1	1	-	2038	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-15	405	multi-exon	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	coding	508	1524	66	1589	60	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4108_CONTIG_1	17	-	1776	6	novel_not_in_catalog	ACTG1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	69	2	NA	1	0	TRUE	NA	NA	0	C	coding	358	1074	76	1149	30	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2642_CONTIG_1	5	-	1414	6	full-splice_match	ZNF622	ENST00000308683	1699	6	274	11	multi-exon	FALSE	canonical	0	0	478	2	NA	0	0	FALSE	NA	NA	0	A	coding	370	1110	175	1284	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7471_CONTIG_1	8	-	1465	10	incomplete-splice_match	FAM49B	ENST00000517654	1817	13	174	178	5prime_fragment	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2060_CONTIG_1	16	+	1574	11	novel_in_catalog	ACSM2A	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1070	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	567	1172	65	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2437_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-27	456	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	62	1021	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_570_CONTIG_1	12	-	1756	10	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	121	2	NA	1	0	TRUE	NA	NA	0	C	coding	517	1551	78	1628	35	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7846_CONTIG_1	17	-	927	7	incomplete-splice_match	APOH	ENST00000205948	1176	8	16	233	internal_fragment	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	coding	301	903	23	925	45	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1464_CONTIG_1	X	+	1544	2	full-splice_match	GJB1	ENST00000374022	1904	2	27	333	multi-exon	FALSE	canonical	0	0	52	2	NA	1	0	FALSE	NA	NA	0	C	coding	283	849	69	917	40	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8107_CONTIG_1	15	+	349	4	novel_in_catalog	CGNL1	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	206	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.386	0.614	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5840_CONTIG_1	7	+	971	7	full-splice_match	TMEM176A	ENST00000004103	1261	7	241	49	multi-exon	FALSE	canonical	0	0	726	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	61	765	20	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8723_CONTIG_1	8	+	1065	10	full-splice_match	DECR1	ENST00000220764	1207	10	70	72	multi-exon	FALSE	canonical	0	0	966	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7724_CONTIG_1	15	-	1801	4	novel_in_catalog	NIPA2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5868_CONTIG_1	1	+	2540	16	full-splice_match	SCP2	ENST00000371514	2811	16	114	157	multi-exon	FALSE	canonical	0	0	1602	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5848_CONTIG_1	14	+	1469	11	full-splice_match	PSMC1	ENST00000261303	1641	11	89	83	multi-exon	FALSE	canonical	0	0	1202	2	NA	0	0	FALSE	NA	NA	0	A	coding	440	1320	15	1334	25	0.204	0.796	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_50_CONTIG_1	10	-	888	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	189	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3683_CONTIG_1	12	-	1741	11	novel_not_in_catalog	SCARB1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	189	2	NA	1	0	TRUE	NA	NA	0	B	coding	362	1086	1	1086	60	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7813_CONTIG_1	19	+	633	7	incomplete-splice_match	PLD3	ENST00000594908	804	8	-10	181	3prime_fragment	TRUE	canonical	0	0	602	2	NA	0	0	FALSE	NA	NA	0	B	coding	153	459	174	632	30	0.656	0.344	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7416_CONTIG_1	6	-	900	7	full-splice_match	GSTA2	ENST00000493422	1303	7	94	309	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6563_CONTIG_1	11	+	523	4	full-splice_match	APOC3	ENST00000227667	550	4	15	12	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7299_CONTIG_1	1	-	636	5	incomplete-splice_match	ARHGAP29	ENST00000552844	3439	26	1370	1433	internal_fragment	FALSE	canonical	0	0	158	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4064_CONTIG_1	8	-	335	4	incomplete-splice_match	CLU	ENST00000523589	878	7	-10	553	internal_fragment	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	86	258	76	333	45	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5932_CONTIG_1	7	-	840	5	incomplete-splice_match	ABCB4	ENST00000453593	3699	26	2811	48	5prime_fragment	FALSE	canonical	0	0	129	2	NA	0	0	FALSE	NA	NA	0	A	coding	256	768	73	840	25	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1018_CONTIG_1	19	-	1030	2	full-splice_match	LRG1	ENST00000306390	3036	2	433	1573	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	coding	334	1002	29	1030	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7060_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7700_CONTIG_1	15	-	359	3	incomplete-splice_match	GATM	ENST00000558336	1522	8	146	1017	internal_fragment	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	8	24	336	359	30	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6797_CONTIG_1	9	-	620	2	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	1029	802	5prime_fragment	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7645_CONTIG_1	4	+	1987	15	full-splice_match	ALB	ENST00000295897	2263	15	50	226	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3146_CONTIG_1	10	+	425	3	novel_in_catalog	DDX21	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2041_CONTIG_1	MT	-	364	2	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.446	0.554	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3517_CONTIG_1	4	+	1955	15	full-splice_match	ALB	ENST00000295897	2263	15	48	260	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_559_CONTIG_1	1	-	951	5	full-splice_match	JTB	ENST00000271843	1287	5	88	248	multi-exon	FALSE	canonical	0	0	431	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4451_CONTIG_1	4	+	1370	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	174	-25	internal_fragment	FALSE	canonical	0	0	1212	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	323	1186	40	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5178_CONTIG_1	10	-	1451	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	-374	multi-exon	TRUE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3913_CONTIG_1	4	+	285	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	1031	167	internal_fragment	FALSE	canonical	0	0	219	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1348_CONTIG_1	3	+	802	6	full-splice_match	C3orf14	ENST00000462069	631	6	49	-220	multi-exon	FALSE	canonical	0	0	410	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5809_CONTIG_1	9	+	759	6	full-splice_match	ORM1	ENST00000259396	802	6	42	1	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2752_CONTIG_1	1	-	470	4	full-splice_match	APOA2	ENST00000367990	474	4	4	0	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	55	354	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8283_CONTIG_1	4	+	239	2	incomplete-splice_match	ALB	ENST00000415165	1483	11	252	992	internal_fragment	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_102_CONTIG_1	10	+	1649	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	18	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8088_CONTIG_1	11	-	993	4	full-splice_match	MRPL16	ENST00000300151	1182	4	96	93	multi-exon	FALSE	canonical	0	0	173	2	NA	0	0	FALSE	NA	NA	0	A	coding	148	444	428	871	40	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1132_CONTIG_1	14	-	1277	7	full-splice_match	DHRS7	ENST00000557185	1386	7	109	0	multi-exon	FALSE	canonical	0	0	208	2	NA	1	0	FALSE	NA	NA	0	A	coding	339	1017	76	1092	55	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7574_CONTIG_1	19	+	1172	4	full-splice_match	APOE	ENST00000252486	1208	4	37	-1	multi-exon	FALSE	canonical	0	0	310	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	75	1025	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3514_CONTIG_1	4	-	1784	9	novel_not_in_catalog	ADH1B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	86	2	NA	1	0	FALSE	NA	NA	0	C	coding	374	1122	69	1190	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6267_CONTIG_1	4	-	1559	10	full-splice_match	FGG	ENST00000404648	1760	10	196	5	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7550_CONTIG_1	14	-	1370	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	219	33	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	47	1300	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3702_CONTIG_1	16	+	1124	3	full-splice_match	HP	ENST00000566821	3024	3	1900	0	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3872_CONTIG_1	4	+	2044	15	full-splice_match	ALB	ENST00000295897	2263	15	50	169	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2670_CONTIG_1	4	+	1882	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	2	3	multi-exon	FALSE	canonical	0	0	1354	2	NA	3	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2968_CONTIG_1	9	-	884	8	incomplete-splice_match	AMBP	ENST00000265132	1434	10	548	2	5prime_fragment	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	67	771	15	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3428_CONTIG_1	12	-	539	2	genic_intron	novelGene_399	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	397	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2459_CONTIG_1	4	+	1984	15	full-splice_match	ALB	ENST00000295897	2263	15	50	229	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2605_CONTIG_1	16	-	2200	6	full-splice_match	ARL6IP1	ENST00000304414	2407	6	129	78	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_226_CONTIG_1	9	+	1676	4	full-splice_match	SLC31A2	ENST00000259392	1785	4	98	11	multi-exon	FALSE	canonical	0	0	298	2	NA	2	0	FALSE	NA	NA	0	C	coding	143	429	36	464	35	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1762_CONTIG_1	2	-	586	3	incomplete-splice_match	SDC1	ENST00000254351	3147	5	311	2250	internal_fragment	FALSE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	B	coding	61	183	403	585	25	0.504	0.496	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8270_CONTIG_1	13	-	839	6	full-splice_match	TPT1	ENST00000530705	1028	6	187	2	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	115	630	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2869_CONTIG_1	4	-	856	5	full-splice_match	H2AFZ	ENST00000296417	979	5	113	10	multi-exon	FALSE	canonical	0	0	108	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	106	489	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5390_CONTIG_1	17	-	2123	10	incomplete-splice_match	P4HB	ENST00000575069	2453	11	302	28	5prime_fragment	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	185	555	743	1297	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_513_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	23	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2106_CONTIG_1	9	+	1314	2	genic	EEF1A1P5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	525	2	NA	0	0	TRUE	NA	NA	0	B	coding	166	498	817	1314	45	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5294_CONTIG_1	10	-	1716	9	incomplete-splice_match	P4HA1	ENST00000394890	2844	15	1124	4	5prime_fragment	FALSE	canonical	0	0	17	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3182_CONTIG_1	5	-	1828	4	novel_in_catalog	SEPP1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8313_CONTIG_1	4	+	1953	15	full-splice_match	ALB	ENST00000295897	2263	15	50	260	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8175_CONTIG_1	4	+	1961	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1800	2	NA	1	0	TRUE	NA	NA	0	C	coding	416	1248	42	1289	35	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4277_CONTIG_1	17	+	1475	8	full-splice_match	SERPINF1	ENST00000254722	1548	8	59	14	multi-exon	FALSE	canonical	0	0	1101	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	105	1358	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2632_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	50	161	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6702_CONTIG_1	11	-	725	2	genic_intron	novelGene_337	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	152	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1719_CONTIG_1	8	+	1080	5	full-splice_match	MRPL15	ENST00000260102	1147	5	67	0	multi-exon	FALSE	canonical	0	0	560	2	NA	0	0	FALSE	NA	NA	0	A	coding	296	888	8	895	5	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3854_CONTIG_1	2	+	1926	10	full-splice_match	CFLAR	ENST00000423241	2128	10	202	0	multi-exon	FALSE	canonical	0	0	1650	2	NA	1	0	FALSE	NA	NA	0	C	coding	480	1440	347	1786	30	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7601_CONTIG_1	11	-	1974	15	incomplete-splice_match	COPB1	ENST00000439561	3382	22	1173	235	5prime_fragment	FALSE	canonical	0	0	30	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.554	0.446	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8049_CONTIG_1	4	+	2047	15	full-splice_match	ALB	ENST00000295897	2263	15	50	166	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1529_CONTIG_1	12	+	993	4	full-splice_match	PEBP1	ENST00000261313	1697	4	266	438	multi-exon	FALSE	canonical	0	0	432	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	87	647	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6068_CONTIG_1	4	+	2035	15	full-splice_match	ALB	ENST00000295897	2263	15	50	178	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1111_CONTIG_1	12	-	1445	2	full-splice_match	ARPC3	ENST00000475777	837	2	85	-693	multi-exon	FALSE	canonical	0	0	83	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3761_CONTIG_1	15	+	944	4	full-splice_match	B2M	ENST00000558401	1715	4	36	735	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3090_CONTIG_1	15	+	743	5	novel_not_in_catalog	B2M	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	207	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3543_CONTIG_1	3	+	1770	14	incomplete-splice_match	TF	ENST00000264998	2143	16	310	63	internal_fragment	FALSE	canonical	0	0	1627	2	NA	1	0	FALSE	NA	NA	0	C	coding	424	1272	388	1659	15	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2694_CONTIG_1	3	-	2099	7	novel_not_in_catalog	CEP70	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5212_CONTIG_1	12	+	788	9	novel_not_in_catalog	GAPDH	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	694	2	NA	0	0	TRUE	NA	NA	0	C	coding	237	711	77	787	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5878_CONTIG_1	19	+	898	6	full-splice_match	TBCB	ENST00000221855	1473	6	562	13	multi-exon	FALSE	canonical	0	0	633	2	NA	0	0	FALSE	NA	NA	0	A	coding	244	732	14	745	50	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1761_CONTIG_1	11	+	904	3	full-splice_match	NNMT	ENST00000299964	1610	3	627	79	multi-exon	FALSE	canonical	0	0	467	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	106	897	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5661_CONTIG_1	15	-	2176	2	genic_intron	novelGene_424	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	297	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2915_CONTIG_1	9	-	1281	9	full-splice_match	C9orf78	ENST00000372447	1795	9	-6	520	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	C	coding	289	867	61	927	90	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6852_CONTIG_1	4	-	1985	4	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	768	-1086	5prime_fragment	FALSE	canonical	0	0	252	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4825_CONTIG_1	6	-	559	6	novel_not_in_catalog	GSTA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	32	2	NA	0	0	TRUE	NA	NA	0	C	coding	146	438	63	500	40	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7658_CONTIG_1	10	+	1393	5	incomplete-splice_match	GHITM	ENST00000372134	2128	9	616	119	internal_fragment	FALSE	canonical	0	0	530	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3150_CONTIG_1	1	-	976	2	full-splice_match	CRP	ENST00000255030	2015	2	1	1038	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	C	coding	224	672	104	775	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8484_CONTIG_1	15	+	369	2	full-splice_match	B2M	ENST00000544417	1027	2	-4	662	multi-exon	FALSE	canonical	0	0	101	2	NA	0	0	FALSE	NA	NA	0	C	coding	111	333	35	367	25	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1604_CONTIG_1	6	+	1574	8	full-splice_match	WTAP	ENST00000358372	3656	8	1554	528	multi-exon	FALSE	canonical	0	0	810	2	NA	2	0	FALSE	NA	NA	0	A	coding	273	819	573	1391	15	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3756_CONTIG_1	X	+	948	2	full-splice_match	GJB1	ENST00000374022	1904	2	34	922	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	62	910	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_885_CONTIG_1	16	-	1938	2	full-splice_match	IGFALS	ENST00000215539	2116	2	58	120	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	605	1815	54	1868	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_519_CONTIG_1	5	-	467	5	full-splice_match	RPS14	ENST00000401695	1599	5	10	1122	multi-exon	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	C	coding	143	429	38	466	0	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8594_CONTIG_1	4	-	1664	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	3	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4124_CONTIG_1	14	+	2127	5	full-splice_match	SERPINA5	ENST00000554866	2211	5	36	48	multi-exon	FALSE	canonical	0	0	1116	2	NA	2	0	FALSE	NA	NA	0	C	coding	406	1218	79	1296	20	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1383_CONTIG_1	4	+	1553	8	full-splice_match	FGB	ENST00000302068	1975	8	57	365	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7519_CONTIG_1	4	+	1494	11	full-splice_match	ALB	ENST00000511370	1519	11	33	-8	multi-exon	FALSE	canonical	0	0	1353	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	464	1327	65	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7333_CONTIG_1	2	+	964	8	full-splice_match	SPP2	ENST00000168148	1024	8	54	6	multi-exon	FALSE	canonical	0	0	680	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	62	667	15	0.212	0.788	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7732_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3840_CONTIG_1	5	-	1567	4	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	113	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5282_CONTIG_1	2	+	1390	6	full-splice_match	HNMT	ENST00000280097	3291	6	170	1731	multi-exon	FALSE	canonical	0	0	535	2	NA	1	1	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2787_CONTIG_1	22	-	1526	11	incomplete-splice_match	PRODH	ENST00000334029	1985	14	430	29	5prime_fragment	TRUE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	A	coding	340	1020	140	1159	30	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3835_CONTIG_1	10	+	780	6	full-splice_match	DPCD	ENST00000370151	858	6	33	45	multi-exon	FALSE	canonical	0	0	523	2	NA	0	0	FALSE	NA	NA	0	A	coding	203	609	17	625	35	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5127_CONTIG_1	11	-	529	4	full-splice_match	TRMT112	ENST00000544844	1106	4	573	4	multi-exon	TRUE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	A	coding	81	243	118	360	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7952_CONTIG_1	4	+	1635	8	full-splice_match	FGB	ENST00000302068	1975	8	61	279	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3084_CONTIG_1	4	+	2049	15	full-splice_match	ALB	ENST00000295897	2263	15	50	164	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2352_CONTIG_1	19	-	1189	6	full-splice_match	SULT2A1	ENST00000222002	1987	6	82	716	multi-exon	FALSE	canonical	0	0	194	2	NA	0	0	FALSE	NA	NA	0	C	coding	285	855	59	913	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1975_CONTIG_1	1	+	922	2	full-splice_match	APCS	ENST00000255040	926	2	1	3	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3168_CONTIG_1	19	+	1362	5	full-splice_match	REEP6	ENST00000233596	1375	5	10	3	multi-exon	FALSE	canonical	0	0	611	2	NA	0	0	FALSE	NA	NA	0	C	coding	184	552	95	646	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1523_CONTIG_1	19	-	380	3	full-splice_match	UQCR11	ENST00000591899	1315	3	47	888	multi-exon	FALSE	canonical	0	0	75	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3619_CONTIG_1	15	-	2099	7	full-splice_match	RAB27A	ENST00000336787	2799	7	28	672	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6301_CONTIG_1	14	-	590	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	379	481	internal_fragment	FALSE	canonical	0	0	301	2	NA	0	0	FALSE	NA	NA	0	C	coding	68	204	385	588	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7031_CONTIG_1	19	-	1711	8	full-splice_match	A1BG	ENST00000263100	1722	8	7	4	multi-exon	FALSE	canonical	0	0	89	2	NA	1	0	FALSE	NA	NA	0	C	coding	495	1485	56	1540	10	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1507_CONTIG_1	3	-	837	5	full-splice_match	TM4SF1	ENST00000305366	1771	5	215	719	multi-exon	FALSE	canonical	0	0	280	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	104	709	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5992_CONTIG_1	19	+	272	3	full-splice_match	APOC1	ENST00000589781	273	3	-2	3	multi-exon	FALSE	canonical	0	0	104	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6084_CONTIG_1	4	+	1992	15	full-splice_match	ALB	ENST00000295897	2263	15	50	221	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5110_CONTIG_1	4	+	1024	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	904	3prime_fragment	FALSE	canonical	0	0	884	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	42	1022	15	0.21	0.79	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5007_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	50	163	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8669_CONTIG_1	10	-	909	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	168	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8183_CONTIG_1	1	+	1016	8	novel_not_in_catalog	RPL5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	869	2	NA	0	0	FALSE	NA	NA	0	C	coding	296	888	79	966	30	0.378	0.622	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1989_CONTIG_1	16	+	788	6	incomplete-splice_match	ACSM3	ENST00000567387	843	8	217	-162	internal_fragment	FALSE	canonical	0	0	519	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7698_CONTIG_1	15	-	1049	7	full-splice_match	RAB27A	ENST00000336787	2799	7	1	1749	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	221	663	230	892	15	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1363_CONTIG_1	4	+	497	4	incomplete-splice_match	ALB	ENST00000415165	1483	11	897	89	internal_fragment	FALSE	canonical	0	0	421	2	NA	0	0	FALSE	NA	NA	0	C	coding	38	114	282	395	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1600_CONTIG_1	6	+	738	6	full-splice_match	APOM	ENST00000375916	1184	6	444	2	multi-exon	FALSE	canonical	0	0	593	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	53	616	10	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4198_CONTIG_1	4	+	1980	15	full-splice_match	ALB	ENST00000295897	2263	15	50	233	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4311_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4764_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5204_CONTIG_1	1	+	1468	3	full-splice_match	SRP9	ENST00000304786	1480	3	8	4	multi-exon	FALSE	canonical	0	0	245	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4173_CONTIG_1	20	+	1106	2	full-splice_match	PCK1	ENST00000467047	5074	2	4030	-62	multi-exon	FALSE	canonical	0	0	26	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6537_CONTIG_1	17	+	1382	7	full-splice_match	MPDU1	ENST00000250124	1601	7	205	14	multi-exon	FALSE	canonical	0	0	629	2	NA	0	0	FALSE	NA	NA	0	C	coding	247	741	12	752	45	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7329_CONTIG_1	9	-	1216	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	46	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7589_CONTIG_1	19	-	1455	9	incomplete-splice_match	SLC27A5	ENST00000601355	1987	10	560	-28	5prime_fragment	FALSE	canonical	0	0	123	2	NA	0	0	FALSE	NA	NA	0	C	coding	376	1128	168	1295	40	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7338_CONTIG_1	11	-	532	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	366	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	165	495	38	532	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6277_CONTIG_1	18	+	867	4	full-splice_match	MYL12A	ENST00000217652	1229	4	282	80	multi-exon	FALSE	canonical	0	0	456	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	114	626	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2351_CONTIG_1	22	+	1411	10	full-splice_match	UPB1	ENST00000326010	2290	10	297	582	multi-exon	FALSE	canonical	0	0	1118	2	NA	0	0	FALSE	NA	NA	0	C	coding	384	1152	48	1199	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6265_CONTIG_1	15	+	802	5	full-splice_match	RAB11A	ENST00000261890	4930	5	44	4084	multi-exon	FALSE	canonical	0	0	595	2	NA	0	0	FALSE	NA	NA	0	A	coding	216	648	85	732	15	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4326_CONTIG_1	11	-	1455	10	full-splice_match	HPX	ENST00000265983	1652	10	72	125	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	30	1415	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4207_CONTIG_1	4	+	1733	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	370	160	internal_fragment	FALSE	canonical	0	0	1572	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	50	1546	35	0.212	0.788	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7668_CONTIG_1	2	-	1297	9	incomplete-splice_match	HDLBP	ENST00000427183	4283	28	2799	187	5prime_fragment	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	B	coding	271	813	290	1102	20	0.688	0.312	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1140_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	441	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	48	1022	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5107_CONTIG_1	3	+	1506	11	full-splice_match	KNG1	ENST00000287611	1720	11	207	7	multi-exon	FALSE	canonical	0	0	1263	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	61	1341	25	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5943_CONTIG_1	X	-	1912	11	novel_in_catalog	ARSE	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	A	coding	546	1638	263	1900	30	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5963_CONTIG_1	4	+	1767	8	full-splice_match	FGB	ENST00000302068	1975	8	57	151	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4209_CONTIG_1	6	+	1628	15	incomplete-splice_match	CFB	ENST00000425368	2862	18	1138	96	internal_fragment	FALSE	canonical	0	0	1514	2	NA	0	0	FALSE	NA	NA	0	C	coding	529	1587	42	1628	45	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_773_CONTIG_1	22	+	1311	10	incomplete-splice_match	EWSR1	ENST00000414183	2189	18	951	-73	internal_fragment	FALSE	canonical	0	0	1016	2	NA	0	0	FALSE	NA	NA	0	A	coding	332	996	58	1053	30	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3731_CONTIG_1	2	+	1215	6	novel_in_catalog	EEF1B2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1034	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4966_CONTIG_1	7	-	1735	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	74	multi-exon	FALSE	canonical	0	0	78	2	NA	3	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	20	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6910_CONTIG_1	19	+	402	4	full-splice_match	APOC1	ENST00000252491	461	4	44	15	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8279_CONTIG_1	4	+	738	6	incomplete-splice_match	ALB	ENST00000415165	1483	11	735	10	internal_fragment	FALSE	canonical	0	0	583	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	138	557	45	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4340_CONTIG_1	10	-	918	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	159	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6180_CONTIG_1	16	+	1192	5	full-splice_match	HP	ENST00000398131	1252	5	14	46	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5913_CONTIG_1	16	-	1448	10	incomplete-splice_match	EIF3CL	ENST00000398944	3053	21	1368	237	5prime_fragment	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	B	coding	458	1374	75	1448	20	0.67	0.33	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_540_CONTIG_1	4	+	2058	15	full-splice_match	ALB	ENST00000295897	2263	15	48	157	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2177_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	17	-1	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2409_CONTIG_1	19	+	1692	13	incomplete-splice_match	HPN	ENST00000392226	1783	14	67	24	internal_fragment	FALSE	canonical	0	0	1393	2	NA	1	0	FALSE	NA	NA	0	B	coding	417	1251	179	1429	45	0.692	0.308	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7256_CONTIG_1	11	-	914	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	286	multi-exon	FALSE	canonical	0	0	320	2	NA	1	0	FALSE	NA	NA	0	C	coding	183	549	207	755	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7674_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	6	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_704_CONTIG_1	4	+	2034	15	full-splice_match	ALB	ENST00000295897	2263	15	48	181	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3923_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	14	2	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1897_CONTIG_1	16	+	1125	3	full-splice_match	HP	ENST00000566821	3024	3	1900	-1	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2268_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	50	170	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1427_CONTIG_1	6	+	1575	14	incomplete-splice_match	CFB	ENST00000425368	2862	18	1255	32	internal_fragment	FALSE	canonical	0	0	1397	2	NA	0	0	FALSE	NA	NA	0	C	coding	496	1488	63	1550	40	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3452_CONTIG_1	4	+	859	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	529	95	internal_fragment	FALSE	canonical	0	0	789	2	NA	1	0	FALSE	NA	NA	0	C	coding	140	420	344	763	30	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3189_CONTIG_1	6	+	1032	9	novel_in_catalog	CFB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	870	2	NA	0	0	FALSE	NA	NA	0	C	coding	307	921	103	1023	10	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6072_CONTIG_1	6	-	704	5	incomplete-splice_match	FLOT1	ENST00000456573	1380	12	891	-215	5prime_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	A	coding	121	363	57	419	20	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8497_CONTIG_1	4	+	1976	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1861	2	NA	1	0	TRUE	NA	NA	0	C	coding	408	1224	612	1835	0	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_536_CONTIG_1	5	+	2289	15	full-splice_match	SDHA	ENST00000264932	2390	15	79	22	multi-exon	FALSE	canonical	0	0	1944	2	NA	0	0	FALSE	NA	NA	0	C	coding	664	1992	37	2028	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4348_CONTIG_1	1	-	1539	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	51	4	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	69	1460	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5100_CONTIG_1	19	-	2156	19	novel_in_catalog	C3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	B	coding	674	2022	106	2127	30	0.692	0.308	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2484_CONTIG_1	22	-	564	3	full-splice_match	DDT	ENST00000398344	713	3	143	6	multi-exon	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	A	coding	118	354	28	381	25	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_140_CONTIG_1	19	+	1442	9	full-splice_match	CALR	ENST00000316448	1903	9	6	455	multi-exon	FALSE	canonical	0	0	1120	2	NA	0	0	FALSE	NA	NA	0	A	coding	417	1251	68	1318	5	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1102_CONTIG_1	9	+	758	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	25	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3139_CONTIG_1	14	-	296	2	incomplete-splice_match	SERPINA1	ENST00000489769	1562	4	1264	2	5prime_fragment	FALSE	canonical	0	0	30	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6030_CONTIG_1	4	+	1502	8	full-splice_match	FGB	ENST00000302068	1975	8	56	417	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5440_CONTIG_1	1	-	463	4	full-splice_match	APOA2	ENST00000367990	474	4	4	7	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	55	354	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2986_CONTIG_1	11	+	917	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	71	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7331_CONTIG_1	11	-	477	5	full-splice_match	RPS25	ENST00000527673	835	5	347	11	multi-exon	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	60	434	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2551_CONTIG_1	3	+	1456	4	genic	KLHL24	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1384	2	NA	3	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4373_CONTIG_1	4	+	1228	7	incomplete-splice_match	FGB	ENST00000302068	1975	8	317	430	internal_fragment	FALSE	canonical	0	0	990	2	NA	0	0	FALSE	NA	NA	0	C	coding	344	1032	188	1219	20	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5530_CONTIG_1	4	+	1643	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	413	207	internal_fragment	FALSE	canonical	0	0	1529	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	7	1503	0	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_407_CONTIG_1	1	-	1521	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	51	22	multi-exon	FALSE	canonical	0	0	109	2	NA	1	0	FALSE	NA	NA	0	C	coding	464	1392	69	1460	40	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2002_CONTIG_1	1	+	1443	8	novel_in_catalog	HAO2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1101	2	NA	0	0	FALSE	NA	NA	0	B	coding	335	1005	150	1154	30	0.654	0.346	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_475_CONTIG_1	3	+	844	3	full-splice_match	BRK1	ENST00000530758	1233	3	83	306	multi-exon	FALSE	canonical	0	0	228	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1153_CONTIG_1	4	-	1543	9	full-splice_match	ADH1A	ENST00000209668	1499	9	-49	5	multi-exon	FALSE	canonical	0	0	181	2	NA	1	0	FALSE	NA	NA	0	C	coding	375	1125	164	1288	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4450_CONTIG_1	4	-	1632	3	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	114	2	NA	0	0	TRUE	NA	NA	0	C	coding	440	1320	100	1419	40	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7327_CONTIG_1	19	+	758	2	full-splice_match	MRPL34	ENST00000252602	968	2	201	9	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	92	276	25	300	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_195_CONTIG_1	11	-	422	5	full-splice_match	FAU	ENST00000529639	847	5	333	92	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	C	coding	121	363	60	422	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1324_CONTIG_1	6	-	1001	7	full-splice_match	GSTA2	ENST00000493422	1303	7	94	208	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8218_CONTIG_1	17	-	1136	8	full-splice_match	APOH	ENST00000205948	1176	8	18	22	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3885_CONTIG_1	9	-	725	4	full-splice_match	NINJ1	ENST00000375446	1281	4	37	519	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	A	coding	152	456	35	490	10	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5077_CONTIG_1	6	-	599	6	novel_not_in_catalog	GSTA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	32	2	NA	0	0	TRUE	NA	NA	0	C	coding	146	438	63	500	20	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5335_CONTIG_1	17	-	1036	9	full-splice_match	ASGR1	ENST00000269299	1504	9	321	147	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	291	873	80	952	25	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7588_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	48	170	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6244_CONTIG_1	16	-	1157	2	full-splice_match	PDF	ENST00000288022	1158	2	-3	4	multi-exon	FALSE	canonical	0	0	602	2	NA	0	0	FALSE	NA	NA	0	A	coding	243	729	29	757	10	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6898_CONTIG_1	3	-	1132	8	full-splice_match	MGLL	ENST00000398104	4187	8	23	3032	multi-exon	FALSE	canonical	0	0	102	2	NA	0	0	FALSE	NA	NA	0	C	coding	303	909	123	1031	60	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3203_CONTIG_1	11	-	1476	10	full-splice_match	HPX	ENST00000265983	1652	10	72	104	multi-exon	FALSE	canonical	0	0	112	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	30	1415	10	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3726_CONTIG_1	9	-	1120	9	novel_in_catalog	AMBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	343	1029	92	1120	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5796_CONTIG_1	20	+	982	2	full-splice_match	ID1	ENST00000376112	994	2	6	6	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	155	465	100	564	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2601_CONTIG_1	4	+	1218	9	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1056	2	NA	0	0	TRUE	NA	NA	0	C	coding	262	786	245	1030	35	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7857_CONTIG_1	6	-	1208	2	incomplete-splice_match	CCNC	ENST00000369220	2118	12	835	75	5prime_fragment	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2230_CONTIG_1	1	-	1250	9	novel_in_catalog	NR1I3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	196	2	NA	0	0	FALSE	NA	NA	0	B	coding	335	1005	230	1234	15	0.642	0.358	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5508_CONTIG_1	17	-	1339	8	full-splice_match	GALK1	ENST00000437911	1379	8	39	1	multi-exon	FALSE	canonical	0	0	216	2	NA	1	0	FALSE	NA	NA	0	C	coding	392	1176	52	1227	15	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3183_CONTIG_1	5	-	2021	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	35	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.286	0.714	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_218_CONTIG_1	19	+	1126	4	full-splice_match	APOE	ENST00000252486	1208	4	42	40	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_883_CONTIG_1	16	+	2192	17	full-splice_match	CIRH1A	ENST00000314423	2322	17	119	11	multi-exon	FALSE	canonical	0	0	2002	2	NA	1	0	FALSE	NA	NA	0	A	coding	686	2058	59	2116	20	0.37	0.63	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_781_CONTIG_1	4	-	1442	9	full-splice_match	ADH1C	ENST00000515683	1740	9	281	17	multi-exon	FALSE	canonical	0	0	89	2	NA	1	0	FALSE	NA	NA	0	C	coding	166	498	699	1196	25	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6558_CONTIG_1	5	+	1860	2	novel_in_catalog	SLC22A5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	634	2	NA	1	0	FALSE	NA	NA	0	A	coding	166	498	242	739	10	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8136_CONTIG_1	22	+	1243	3	full-splice_match	ATF4	ENST00000396680	1420	3	148	29	multi-exon	FALSE	canonical	0	0	358	2	NA	0	0	FALSE	NA	NA	0	C	coding	351	1053	133	1185	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2848_CONTIG_1	1	-	1573	6	novel_not_in_catalog	AK2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	222	2	NA	0	0	FALSE	NA	NA	0	A	coding	155	465	235	699	35	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6337_CONTIG_1	3	+	1462	5	full-splice_match	AADAC	ENST00000232892	1642	5	75	105	multi-exon	FALSE	canonical	0	0	654	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3497_CONTIG_1	4	-	631	4	novel_not_in_catalog	CBR4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5421_CONTIG_1	22	+	1150	2	genic_intron	novelGene_296	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	915	2	NA	0	0	FALSE	NA	NA	0	A	coding	100	300	63	362	40	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2545_CONTIG_1	6	+	1161	5	full-splice_match	HLA-DRA	ENST00000395388	1280	5	45	74	multi-exon	FALSE	canonical	0	0	840	2	NA	0	0	FALSE	NA	NA	0	A	coding	254	762	65	826	20	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4282_CONTIG_1	16	+	1225	5	full-splice_match	HP	ENST00000565574	1187	5	-6	-32	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_931_CONTIG_1	14	+	1433	8	full-splice_match	EIF2S1	ENST00000256383	4485	8	356	2696	multi-exon	FALSE	canonical	0	0	927	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4409_CONTIG_1	19	-	726	5	novel_in_catalog	STAP2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	233	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	132	587	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7682_CONTIG_1	9	-	387	2	incomplete-splice_match	BAAT	ENST00000395051	2252	3	633	1232	5prime_fragment	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	73	219	168	386	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6556_CONTIG_1	4	+	591	5	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	1335	3prime_fragment	FALSE	canonical	0	0	521	2	NA	1	0	FALSE	NA	NA	0	C	coding	184	552	40	591	35	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4981_CONTIG_1	4	+	1832	14	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1672	2	NA	0	0	TRUE	NA	NA	0	C	coding	358	1074	40	1113	35	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3754_CONTIG_1	1	+	838	7	incomplete-splice_match	RPL5	ENST00000370321	1043	8	15	190	3prime_fragment	FALSE	canonical	0	0	780	2	NA	0	0	FALSE	NA	NA	0	C	coding	254	762	76	837	50	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2824_CONTIG_1	1	+	800	3	novel_not_in_catalog	EFNA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	481	2	NA	0	0	TRUE	NA	NA	0	A	coding	174	522	108	629	10	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4509_CONTIG_1	11	-	874	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	25	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7586_CONTIG_1	2	-	1965	15	incomplete-splice_match	HDLBP	ENST00000391975	6372	28	55	4352	internal_fragment	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	B	coding	597	1791	174	1964	40	0.72	0.28	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8302_CONTIG_1	4	+	2009	15	full-splice_match	ALB	ENST00000295897	2263	15	50	204	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4434_CONTIG_1	8	-	513	4	full-splice_match	RPS20	ENST00000009589	626	4	-2	115	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	A	coding	119	357	126	482	10	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5839_CONTIG_1	16	+	391	3	full-splice_match	MT1E	ENST00000306061	704	3	306	7	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4712_CONTIG_1	6	-	1743	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	557	3	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	63	1448	15	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7080_CONTIG_1	17	-	403	3	full-splice_match	P4HB	ENST00000571507	493	3	220	-130	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6721_CONTIG_1	10	+	1001	10	full-splice_match	ATP5C1	ENST00000356708	1163	10	39	123	multi-exon	FALSE	canonical	0	0	967	2	NA	0	0	FALSE	NA	NA	0	C	coding	274	822	113	934	10	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_162_CONTIG_1	9	-	1535	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	867	multi-exon	FALSE	canonical	0	0	66	2	NA	1	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	15	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8202_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2988_CONTIG_1	10	-	703	6	novel_not_in_catalog	FUOM	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	A	coding	165	495	28	522	45	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1230_CONTIG_1	12	+	1654	8	full-splice_match	CMAS	ENST00000229329	1787	8	65	68	multi-exon	FALSE	canonical	0	0	1179	2	NA	1	0	FALSE	NA	NA	0	A	coding	434	1302	66	1367	20	0.264	0.736	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7199_CONTIG_1	4	-	1537	10	full-splice_match	FGG	ENST00000404648	1760	10	196	27	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4844_CONTIG_1	2	-	2118	9	full-splice_match	SERPINE2	ENST00000409304	2161	9	2	41	multi-exon	FALSE	canonical	0	0	188	2	NA	0	0	FALSE	NA	NA	0	A	coding	397	1191	211	1401	15	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7141_CONTIG_1	X	+	1102	3	novel_not_in_catalog	CLDN2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	877	2	NA	0	0	TRUE	NA	NA	0	A	coding	205	615	319	933	25	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1394_CONTIG_1	17	-	385	2	full-splice_match	SAT2	ENST00000570914	765	2	367	13	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6366_CONTIG_1	9	+	1868	12	novel_in_catalog	SPTAN1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1478	2	NA	0	0	FALSE	NA	NA	0	A	coding	522	1566	36	1601	20	0.55	0.45	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7474_CONTIG_1	19	-	1205	5	full-splice_match	CD320	ENST00000301458	1250	5	44	1	multi-exon	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	A	coding	282	846	22	867	0	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3329_CONTIG_1	3	+	542	3	novel_in_catalog	TF	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	376	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1911_CONTIG_1	19	-	1909	14	incomplete-splice_match	ILVBL	ENST00000534378	2067	15	184	-26	5prime_fragment	FALSE	canonical	0	0	85	2	NA	0	0	FALSE	NA	NA	0	B	coding	525	1575	70	1644	25	0.706	0.294	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3292_CONTIG_1	11	-	1446	13	novel_not_in_catalog	CADM1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	149	2	NA	0	0	TRUE	NA	NA	0	A	coding	306	918	320	1237	15	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3800_CONTIG_1	4	+	1913	8	full-splice_match	FGB	ENST00000302068	1975	8	59	3	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6787_CONTIG_1	4	+	1838	8	full-splice_match	FGB	ENST00000302068	1975	8	55	82	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7585_CONTIG_1	15	-	865	5	full-splice_match	PPIB	ENST00000300026	1081	5	194	22	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	A	coding	216	648	26	673	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7579_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2647_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	50	167	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6867_CONTIG_1	19	-	794	6	full-splice_match	ETFB	ENST00000309244	900	6	65	41	multi-exon	FALSE	canonical	0	0	84	2	NA	1	0	FALSE	NA	NA	0	C	coding	255	765	28	792	25	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6954_CONTIG_1	16	+	1237	5	full-splice_match	HP	ENST00000398131	1252	5	17	-2	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1851_CONTIG_1	12	+	1142	7	incomplete-splice_match	ALDH2	ENST00000261733	2018	13	803	73	internal_fragment	FALSE	canonical	0	0	779	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	141	809	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7355_CONTIG_1	4	+	1297	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	229	-7	internal_fragment	FALSE	canonical	0	0	1157	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	268	1131	65	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3941_CONTIG_1	16	+	1152	5	full-splice_match	HP	ENST00000398131	1252	5	17	83	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_567_CONTIG_1	4	+	2036	15	full-splice_match	ALB	ENST00000295897	2263	15	50	177	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3499_CONTIG_1	11	+	921	3	full-splice_match	NNMT	ENST00000299964	1610	3	625	64	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	108	899	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1382_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8400_CONTIG_1	10	-	885	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	192	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3779_CONTIG_1	19	+	338	2	incomplete-splice_match	FTL	ENST00000331825	878	4	8	532	3prime_fragment	FALSE	canonical	0	0	301	2	NA	1	0	FALSE	NA	NA	0	C	coding	46	138	200	337	10	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4597_CONTIG_1	5	-	1531	2	novel_not_in_catalog	FAXDC2	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	1124	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_933_CONTIG_1	7	+	1736	13	full-splice_match	PMPCB	ENST00000249269	2472	13	22	714	multi-exon	TRUE	canonical	0	0	1421	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_848_CONTIG_1	4	+	1479	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	552	232	internal_fragment	FALSE	canonical	0	0	1390	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	501	1364	50	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5669_CONTIG_1	4	+	2010	15	full-splice_match	ALB	ENST00000295897	2263	15	51	202	multi-exon	FALSE	canonical	0	0	1891	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2914_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7132_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2480_CONTIG_1	1	+	827	7	incomplete-splice_match	RPL5	ENST00000370321	1043	8	15	201	3prime_fragment	FALSE	canonical	0	0	780	2	NA	1	0	FALSE	NA	NA	0	C	coding	250	750	76	825	45	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7767_CONTIG_1	4	+	2038	15	full-splice_match	ALB	ENST00000295897	2263	15	45	180	multi-exon	FALSE	canonical	0	0	1897	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	45	1871	65	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6830_CONTIG_1	4	+	899	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	531	53	internal_fragment	FALSE	canonical	0	0	787	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	342	761	5	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_809_CONTIG_1	4	+	1740	13	incomplete-splice_match	ALB	ENST00000295897	2263	15	345	178	internal_fragment	FALSE	canonical	0	0	1597	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	75	1571	60	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4481_CONTIG_1	X	-	874	8	full-splice_match	NAA10	ENST00000464845	1772	8	208	690	multi-exon	FALSE	canonical	0	0	132	2	NA	0	0	FALSE	NA	NA	0	A	coding	222	666	151	816	15	0.228	0.772	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4859_CONTIG_1	3	+	493	3	full-splice_match	CMC1	ENST00000423894	549	3	17	39	multi-exon	FALSE	canonical	0	0	269	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2629_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4324_CONTIG_1	3	-	899	2	full-splice_match	GPX1	ENST00000419783	1146	2	247	0	multi-exon	FALSE	canonical	0	0	327	2	NA	1	0	FALSE	NA	NA	0	A	coding	145	435	250	684	5	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8259_CONTIG_1	MT	-	1337	2	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.504	0.496	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_451_CONTIG_1	4	+	1472	11	full-splice_match	ALB	ENST00000511370	1519	11	43	4	multi-exon	FALSE	canonical	0	0	1343	2	NA	2	0	FALSE	NA	NA	0	C	coding	288	864	454	1317	40	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4315_CONTIG_1	1	+	367	2	incomplete-splice_match	CFHR2	ENST00000473386	599	3	88	144	internal_fragment	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.434	0.566	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2563_CONTIG_1	11	-	848	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	51	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	0	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1683_CONTIG_1	4	+	1973	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1833	2	NA	1	0	TRUE	NA	NA	0	C	coding	463	1389	419	1807	65	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1022_CONTIG_1	16	+	361	3	novel_not_in_catalog	MT2A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	128	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3987_CONTIG_1	4	-	1343	2	genic_intron	novelGene_596	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	1293	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.298	0.702	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5473_CONTIG_1	1	+	2123	7	novel_not_in_catalog	RBM8A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1452	2	NA	0	0	TRUE	NA	NA	0	C	coding	158	474	76	549	55	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5604_CONTIG_1	17	-	1088	9	incomplete-splice_match	STAT3	ENST00000389272	2615	23	1407	120	5prime_fragment	FALSE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	A	coding	301	903	26	928	50	0.348	0.652	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_344_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5388_CONTIG_1	12	-	620	3	full-splice_match	MRPL51	ENST00000229238	1136	3	342	174	multi-exon	FALSE	canonical	0	0	199	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3907_CONTIG_1	4	+	1909	15	full-splice_match	ALB	ENST00000295897	2263	15	50	304	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5342_CONTIG_1	19	+	851	2	novel_in_catalog	ICAM1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	B	coding	112	336	41	376	15	0.52	0.48	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4687_CONTIG_1	5	+	1518	9	incomplete-splice_match	CCT5	ENST00000503026	1933	11	210	205	internal_fragment	FALSE	canonical	0	0	1300	2	NA	1	0	FALSE	NA	NA	0	A	coding	462	1386	40	1425	25	0.272	0.728	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7221_CONTIG_1	15	+	939	4	full-splice_match	B2M	ENST00000558401	1715	4	40	736	multi-exon	FALSE	canonical	0	0	404	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6364_CONTIG_1	9	-	787	7	incomplete-splice_match	AMBP	ENST00000265132	1434	10	642	5	5prime_fragment	FALSE	canonical	0	0	75	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	165	677	20	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2818_CONTIG_1	10	+	1495	8	incomplete-splice_match	ACADSB	ENST00000368869	1599	10	302	-198	internal_fragment	FALSE	canonical	0	0	872	2	NA	1	0	FALSE	NA	NA	0	C	coding	227	681	260	940	25	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7361_CONTIG_1	14	-	1359	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	45	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6297_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_505_CONTIG_1	9	-	1257	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	5	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2460_CONTIG_1	4	+	2017	15	full-splice_match	ALB	ENST00000295897	2263	15	48	198	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6934_CONTIG_1	4	+	1112	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	326	45	internal_fragment	FALSE	canonical	0	0	992	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	103	966	10	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_944_CONTIG_1	5	-	1550	6	full-splice_match	CMBL	ENST00000296658	2335	6	148	637	multi-exon	FALSE	canonical	0	0	254	2	NA	1	0	FALSE	NA	NA	0	C	coding	245	735	274	1008	30	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6003_CONTIG_1	14	-	1072	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	391	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	48	1070	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5955_CONTIG_1	12	+	1709	7	incomplete-splice_match	C1S	ENST00000402681	2522	11	778	35	internal_fragment	FALSE	canonical	0	0	638	2	NA	0	0	FALSE	NA	NA	0	B	coding	397	1191	242	1432	25	0.652	0.348	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2016_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	6	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1107_CONTIG_1	4	+	1888	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	48	327	3prime_fragment	FALSE	canonical	0	0	1826	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3745_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3450_CONTIG_1	12	+	1667	8	incomplete-splice_match	OS9	ENST00000315970	2691	15	953	71	internal_fragment	FALSE	canonical	0	0	966	2	NA	0	0	FALSE	NA	NA	0	A	coding	354	1062	28	1089	40	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6983_CONTIG_1	4	+	1916	15	full-splice_match	ALB	ENST00000295897	2263	15	48	299	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_628_CONTIG_1	6	-	1006	9	novel_not_in_catalog	ECI2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	45	2	NA	0	0	TRUE	NA	NA	0	C	coding	194	582	91	672	55	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3877_CONTIG_1	16	+	535	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	343	2	NA	0	0	TRUE	NA	NA	0	C	coding	169	507	28	534	45	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1311_CONTIG_1	19	-	833	5	full-splice_match	SMIM7	ENST00000358726	850	5	-11	28	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	103	309	44	352	65	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3338_CONTIG_1	5	-	2558	2	genic_intron	novelGene_92	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	2471	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	80	0.496	0.504	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7904_CONTIG_1	5	+	2035	14	novel_not_in_catalog	SDHA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1722	2	NA	0	0	TRUE	NA	NA	0	C	coding	527	1581	36	1616	35	0.956	0.044	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1675_CONTIG_1	3	+	1631	11	full-splice_match	KNG1	ENST00000287611	1720	11	83	6	multi-exon	FALSE	canonical	0	0	1387	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	185	1465	20	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1879_CONTIG_1	16	+	724	7	full-splice_match	IL32	ENST00000440815	920	7	54	142	multi-exon	FALSE	canonical	0	0	304	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	104	667	5	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2681_CONTIG_1	4	+	1575	8	full-splice_match	FGB	ENST00000302068	1975	8	61	339	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4263_CONTIG_1	12	+	1943	13	full-splice_match	ALDH2	ENST00000261733	2018	13	40	35	multi-exon	FALSE	canonical	0	0	1542	2	NA	0	0	FALSE	NA	NA	0	C	coding	517	1551	22	1572	30	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1490_CONTIG_1	11	-	789	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	110	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	250	750	39	788	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6053_CONTIG_1	4	-	1093	8	novel_in_catalog	ADH6	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	92	976	45	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4309_CONTIG_1	18	+	629	4	full-splice_match	TTR	ENST00000237014	957	4	153	175	multi-exon	FALSE	canonical	0	0	360	2	NA	1	1	FALSE	NA	NA	0	C	coding	147	441	25	465	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7622_CONTIG_1	5	-	2042	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	14	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.282	0.718	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4555_CONTIG_1	19	-	676	3	incomplete-splice_match	POLR2E	ENST00000591767	1041	8	514	-149	5prime_fragment	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_22_CONTIG_1	1	-	1290	8	incomplete-splice_match	ECHDC2	ENST00000371522	1509	10	288	-69	5prime_fragment	TRUE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	B	coding	191	573	110	682	20	0.706	0.294	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_722_CONTIG_1	3	+	802	3	incomplete-splice_match	AHSG	ENST00000273784	1553	7	717	34	internal_fragment	FALSE	canonical	0	0	121	2	NA	0	0	FALSE	NA	NA	0	C	coding	120	360	104	463	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6772_CONTIG_1	3	-	755	6	incomplete-splice_match	ITIH4	ENST00000406595	2872	22	2100	17	5prime_fragment	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	B	coding	210	630	1	630	15	0.562	0.438	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5341_CONTIG_1	3	+	1465	8	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	886	2	NA	0	0	TRUE	NA	NA	0	C	coding	321	963	83	1045	40	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4911_CONTIG_1	6	-	1090	5	incomplete-splice_match	EEF1A1	ENST00000331523	1923	8	748	85	5prime_fragment	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	C	coding	262	786	98	883	35	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_197_CONTIG_1	10	+	1266	7	novel_in_catalog	CYP2E1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	961	2	NA	0	0	FALSE	NA	NA	0	C	coding	356	1068	76	1143	60	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_144_CONTIG_1	10	+	2410	15	incomplete-splice_match	DHTKD1	ENST00000263035	5159	17	544	2205	internal_fragment	TRUE	canonical	0	0	2176	2	NA	0	0	FALSE	NA	NA	0	B	coding	750	2250	26	2275	25	0.742	0.258	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2875_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7801_CONTIG_1	14	-	1020	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	442	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	47	1018	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6791_CONTIG_1	9	-	633	5	full-splice_match	HINT2	ENST00000259667	628	5	-21	16	multi-exon	FALSE	canonical	0	0	144	2	NA	0	0	FALSE	NA	NA	0	A	coding	163	489	64	552	25	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4778_CONTIG_1	16	+	1213	5	full-splice_match	HP	ENST00000398131	1252	5	17	22	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2081_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3346_CONTIG_1	19	+	869	4	full-splice_match	FTL	ENST00000331825	878	4	8	1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1730_CONTIG_1	1	-	842	4	incomplete-splice_match	SERPINC1	ENST00000367698	1594	7	751	1	5prime_fragment	FALSE	canonical	0	0	130	2	NA	0	0	FALSE	NA	NA	0	C	coding	182	546	215	760	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_601_CONTIG_1	20	+	1853	7	full-splice_match	PSMF1	ENST00000246015	2042	7	44	145	multi-exon	FALSE	canonical	0	0	896	2	NA	1	0	FALSE	NA	NA	0	A	coding	263	789	133	921	10	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4527_CONTIG_1	12	-	1676	2	full-splice_match	SDS	ENST00000546785	576	2	-2	-1098	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1910_CONTIG_1	11	-	968	4	novel_in_catalog	IGF2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	non_canonical	0	0	193	2	NA	0	0	FALSE	NA	NA	0	A	coding	179	537	212	748	40	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_767_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7734_CONTIG_1	X	+	1048	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	17	multi-exon	FALSE	canonical	0	0	524	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	180	692	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5692_CONTIG_1	14	-	1014	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	443	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3668_CONTIG_1	12	+	1496	5	full-splice_match	HSD17B6	ENST00000322165	1512	5	0	16	multi-exon	FALSE	canonical	0	0	846	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	111	1061	5	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8392_CONTIG_1	3	+	2308	17	full-splice_match	TF	ENST00000402696	2968	17	437	223	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4724_CONTIG_1	19	-	1060	4	novel_in_catalog	RABAC1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	612	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5713_CONTIG_1	9	+	455	4	incomplete-splice_match	ORM1	ENST00000259396	802	6	42	305	3prime_fragment	FALSE	canonical	0	0	364	2	NA	0	0	FALSE	NA	NA	0	C	coding	139	417	37	453	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4381_CONTIG_1	4	+	344	4	full-splice_match	ALB	ENST00000515133	665	4	2	319	multi-exon	FALSE	canonical	0	0	309	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	40	342	30	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2194_CONTIG_1	17	-	645	4	incomplete-splice_match	VTN	ENST00000536498	2046	10	55	1346	internal_fragment	FALSE	canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	95	643	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1798_CONTIG_1	16	+	1080	3	full-splice_match	HP	ENST00000566821	3024	3	1913	31	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	261	944	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3345_CONTIG_1	11	+	906	3	full-splice_match	NNMT	ENST00000299964	1610	3	625	79	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	108	899	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3197_CONTIG_1	9	-	915	3	novel_not_in_catalog	AQP7P1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	519	2	NA	0	0	TRUE	NA	NA	0	A	coding	103	309	7	315	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5149_CONTIG_1	18	+	605	4	full-splice_match	TTR	ENST00000237014	957	4	151	201	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4335_CONTIG_1	4	-	1447	9	full-splice_match	ADH1A	ENST00000209668	1499	9	43	9	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	72	1196	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4280_CONTIG_1	10	-	919	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	158	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7794_CONTIG_1	4	-	1788	3	incomplete-splice_match	FGA	ENST00000403106	2248	5	365	95	5prime_fragment	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	535	1605	42	1646	10	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5958_CONTIG_1	9	+	726	6	full-splice_match	ORM1	ENST00000259396	802	6	42	34	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1547_CONTIG_1	10	-	916	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	161	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4763_CONTIG_1	3	+	1573	7	full-splice_match	AHSG	ENST00000411641	1711	7	133	5	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	87	1187	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6965_CONTIG_1	17	-	1286	9	full-splice_match	ASGR1	ENST00000269299	1504	9	206	12	multi-exon	FALSE	canonical	0	0	169	2	NA	1	0	FALSE	NA	NA	0	C	coding	291	873	195	1067	35	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7783_CONTIG_1	1	-	1303	8	incomplete-splice_match	CCT3	ENST00000368259	1815	12	509	3	5prime_fragment	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	93	1073	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5322_CONTIG_1	7	-	1107	5	incomplete-splice_match	CYP3A4	ENST00000336411	2153	13	990	56	5prime_fragment	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8409_CONTIG_1	9	+	2009	7	full-splice_match	CNTLN	ENST00000380641	4871	7	20	2842	multi-exon	FALSE	canonical	0	0	989	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4385_CONTIG_1	16	+	1173	5	full-splice_match	HP	ENST00000398131	1252	5	14	65	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5013_CONTIG_1	11	+	944	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	44	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_374_CONTIG_1	4	+	2009	15	full-splice_match	ALB	ENST00000295897	2263	15	50	204	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2357_CONTIG_1	1	-	1570	9	full-splice_match	HMGCL	ENST00000374490	1600	9	26	4	multi-exon	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	19	993	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4970_CONTIG_1	5	+	1119	2	novel_in_catalog	LEAP2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	88	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_464_CONTIG_1	14	+	1668	5	novel_not_in_catalog	SERPINA3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1225	2	NA	0	0	FALSE	NA	NA	0	C	coding	420	1260	167	1426	5	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1226_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	48	159	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5505_CONTIG_1	17	+	483	4	incomplete-splice_match	PIPOX	ENST00000469082	760	6	162	115	internal_fragment	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	B	coding	136	408	75	482	10	0.492	0.508	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6921_CONTIG_1	4	-	1563	10	full-splice_match	FGG	ENST00000404648	1760	10	193	4	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3246_CONTIG_1	14	-	1015	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	448	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4216_CONTIG_1	5	-	2052	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	4	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2486_CONTIG_1	3	+	1299	10	incomplete-splice_match	TF	ENST00000264998	2143	16	803	41	internal_fragment	FALSE	canonical	0	0	1134	2	NA	1	0	FALSE	NA	NA	0	C	coding	371	1113	54	1166	65	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1713_CONTIG_1	16	+	1225	5	full-splice_match	HP	ENST00000565574	1187	5	-3	-35	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2021_CONTIG_1	2	-	1068	2	novel_not_in_catalog	FKBP7	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	86	2	NA	1	1	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1696_CONTIG_1	7	+	1087	12	incomplete-splice_match	ASL	ENST00000395332	1622	16	558	-23	internal_fragment	FALSE	canonical	0	0	900	2	NA	0	0	FALSE	NA	NA	0	B	coding	340	1020	23	1042	0	0.694	0.306	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3645_CONTIG_1	11	-	539	3	full-splice_match	STARD10	ENST00000543089	506	3	98	-131	multi-exon	FALSE	canonical	0	0	75	2	NA	0	0	FALSE	NA	NA	0	A	coding	80	240	132	371	15	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3605_CONTIG_1	19	-	774	4	novel_in_catalog	EEF2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	356	2	NA	0	0	FALSE	NA	NA	0	B	coding	225	675	99	773	10	0.504	0.496	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8163_CONTIG_1	3	+	1754	11	novel_not_in_catalog	IL1RAP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1308	2	NA	1	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5328_CONTIG_1	17	+	1454	8	full-splice_match	SERPINF1	ENST00000254722	1548	8	81	13	multi-exon	FALSE	canonical	0	0	1079	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	83	1336	15	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8490_CONTIG_1	10	-	583	2	incomplete-splice_match	MICU1	ENST00000418483	1212	7	680	-51	5prime_fragment	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3503_CONTIG_1	4	+	2059	15	full-splice_match	ALB	ENST00000295897	2263	15	48	156	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_831_CONTIG_1	1	-	1524	9	full-splice_match	HMGCL	ENST00000374490	1600	9	26	50	multi-exon	FALSE	canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	coding	325	975	19	993	35	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1283_CONTIG_1	4	+	2019	15	full-splice_match	ALB	ENST00000295897	2263	15	48	196	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6356_CONTIG_1	7	-	1645	7	novel_not_in_catalog	ACTB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	75	2	NA	0	0	TRUE	NA	NA	0	C	coding	346	1038	82	1119	20	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_275_CONTIG_1	7	-	1150	6	incomplete-splice_match	MLXIPL	ENST00000395189	2999	16	1617	232	5prime_fragment	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	B	coding	233	699	10	708	50	0.65	0.35	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_435_CONTIG_1	4	+	2038	15	full-splice_match	ALB	ENST00000295897	2263	15	50	175	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3943_CONTIG_1	11	-	873	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	25	multi-exon	FALSE	canonical	0	0	17	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	38	838	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_881_CONTIG_1	5	-	1961	6	full-splice_match	YIPF5	ENST00000274496	3147	6	9	1177	multi-exon	FALSE	canonical	0	0	116	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_996_CONTIG_1	19	+	826	4	full-splice_match	FTL	ENST00000331825	878	4	8	44	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2902_CONTIG_1	18	-	825	3	full-splice_match	C18orf32	ENST00000579820	987	3	18	144	multi-exon	FALSE	canonical	0	0	28	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3144_CONTIG_1	4	+	1760	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	128	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8554_CONTIG_1	11	+	530	4	full-splice_match	APOC3	ENST00000227667	550	4	17	3	multi-exon	FALSE	canonical	0	0	224	2	NA	1	0	FALSE	NA	NA	0	C	coding	99	297	46	342	15	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_641_CONTIG_1	18	+	502	3	novel_in_catalog	TTR	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	268	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	29	373	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1845_CONTIG_1	12	-	919	7	full-splice_match	RPL6	ENST00000202773	947	7	36	-8	multi-exon	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	20	883	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2416_CONTIG_1	9	+	752	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	30	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8396_CONTIG_1	2	-	375	3	genic_intron	novelGene_535	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	24	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.2	0.8	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6200_CONTIG_1	9	-	1120	9	novel_in_catalog	AMBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	343	1029	92	1120	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4932_CONTIG_1	5	-	1037	9	incomplete-splice_match	F12	ENST00000253496	2049	14	30	982	internal_fragment	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	339	1017	20	1036	20	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8075_CONTIG_1	4	-	1551	10	full-splice_match	FGG	ENST00000404648	1760	10	193	16	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7287_CONTIG_1	19	-	1105	2	novel_in_catalog	CTB-50L17.14	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	60	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.466	0.534	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_249_CONTIG_1	7	+	1319	3	novel_in_catalog	CYP3A43	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1124	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.564	0.436	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7506_CONTIG_1	10	+	438	3	incomplete-splice_match	CYP2E1	ENST00000541080	745	6	423	-116	internal_fragment	FALSE	canonical	0	0	290	2	NA	0	0	FALSE	NA	NA	0	C	coding	135	405	32	436	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5775_CONTIG_1	12	-	2174	9	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	2	0	TRUE	NA	NA	0	C	coding	621	1863	58	1920	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3419_CONTIG_1	7	-	504	3	genic_intron	novelGene_553	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6288_CONTIG_1	4	-	406	4	incomplete-splice_match	ADH4	ENST00000504125	665	6	-29	288	internal_fragment	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	coding	110	330	76	405	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4139_CONTIG_1	11	+	1167	5	incomplete-splice_match	SERPING1	ENST00000531133	1004	6	103	-266	internal_fragment	FALSE	canonical	0	0	647	2	NA	0	0	FALSE	NA	NA	0	C	coding	191	573	326	898	5	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_824_CONTIG_1	17	-	799	4	full-splice_match	GABARAP	ENST00000302386	1634	4	422	413	multi-exon	FALSE	canonical	0	0	108	2	NA	0	0	FALSE	NA	NA	0	C	coding	117	351	19	369	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1238_CONTIG_1	12	+	1091	3	full-splice_match	ERP29	ENST00000261735	1735	3	129	515	multi-exon	FALSE	canonical	0	0	304	2	NA	1	0	FALSE	NA	NA	0	C	coding	261	783	22	804	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6729_CONTIG_1	6	-	2108	5	incomplete-splice_match	ALDH8A1	ENST00000265605	2558	7	439	11	5prime_fragment	FALSE	canonical	0	0	72	2	NA	0	0	FALSE	NA	NA	0	B	coding	357	1071	21	1091	35	0.644	0.356	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3469_CONTIG_1	3	+	2286	17	full-splice_match	TF	ENST00000402696	2968	17	439	243	multi-exon	FALSE	canonical	0	0	2108	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	47	2140	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_495_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8157_CONTIG_1	22	-	1086	9	incomplete-splice_match	RPL3	ENST00000216146	1442	10	148	208	internal_fragment	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	353	1059	27	1085	20	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4016_CONTIG_1	2	+	1251	11	incomplete-splice_match	DDX1	ENST00000233084	2706	26	1404	51	internal_fragment	FALSE	canonical	0	0	976	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5066_CONTIG_1	11	-	605	4	full-splice_match	SAA4	ENST00000278222	727	4	87	35	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	95	484	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2323_CONTIG_1	22	-	889	5	incomplete-splice_match	DDX17	ENST00000403230	2322	13	1349	84	5prime_fragment	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	A	coding	276	828	62	889	5	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7412_CONTIG_1	1	-	681	5	full-splice_match	GOLT1A	ENST00000308302	883	5	142	60	multi-exon	TRUE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	A	coding	132	396	45	440	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3331_CONTIG_1	1	+	1334	7	full-splice_match	MRPL37	ENST00000360840	1478	7	-1	145	multi-exon	FALSE	canonical	0	0	1272	2	NA	0	0	FALSE	NA	NA	0	A	coding	418	1254	79	1332	10	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_85_CONTIG_1	1	+	535	2	full-splice_match	APCS	ENST00000255040	926	2	1	390	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	C	coding	146	438	97	534	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4203_CONTIG_1	2	+	639	4	incomplete-splice_match	SLC3A1	ENST00000409229	2909	9	1032	1238	internal_fragment	FALSE	canonical	0	0	468	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	40	0.506	0.494	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_460_CONTIG_1	17	-	465	5	incomplete-splice_match	SHMT1	ENST00000580002	1759	11	760	534	internal_fragment	FALSE	canonical	0	0	81	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	63	464	15	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7547_CONTIG_1	4	+	2018	15	full-splice_match	ALB	ENST00000295897	2263	15	50	195	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_904_CONTIG_1	MT	-	1575	2	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.458	0.542	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_868_CONTIG_1	1	+	2144	12	full-splice_match	C4BPA	ENST00000367070	2243	12	97	2	multi-exon	FALSE	canonical	0	0	1717	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5160_CONTIG_1	16	-	1470	11	incomplete-splice_match	CES1	ENST00000360526	2006	14	529	7	5prime_fragment	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	10	1278	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5836_CONTIG_1	12	-	591	2	full-splice_match	UBC	ENST00000339647	2688	2	497	1600	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	174	522	68	589	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3520_CONTIG_1	1	-	2109	12	novel_in_catalog	SELENBP1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	68	2	NA	1	0	FALSE	NA	NA	0	C	coding	274	822	1071	1892	35	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8722_CONTIG_1	9	+	762	5	full-splice_match	TMEM141	ENST00000290079	768	5	-11	17	multi-exon	FALSE	canonical	0	0	340	2	NA	0	0	FALSE	NA	NA	0	A	coding	108	324	28	351	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2679_CONTIG_1	21	+	438	3	incomplete-splice_match	ITSN1	ENST00000399338	3115	21	204	2473	internal_fragment	FALSE	canonical	0	0	341	2	NA	0	0	FALSE	NA	NA	0	A	coding	141	423	14	436	20	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2090_CONTIG_1	18	-	1571	10	full-splice_match	ACAA2	ENST00000285093	2018	10	437	10	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	40	1230	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2878_CONTIG_1	1	-	2210	13	incomplete-splice_match	F5	ENST00000367797	7024	25	4777	37	5prime_fragment	FALSE	canonical	0	0	221	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.62	0.38	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6744_CONTIG_1	15	+	1175	8	novel_not_in_catalog	IVD	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	761	2	NA	0	0	TRUE	NA	NA	0	B	coding	247	741	186	926	5	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4421_CONTIG_1	5	+	694	3	novel_in_catalog	RAI14	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	175	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1644_CONTIG_1	2	+	420	5	full-splice_match	RPL31	ENST00000264258	1865	5	578	867	multi-exon	FALSE	canonical	0	0	369	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	24	398	45	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7706_CONTIG_1	X	-	895	7	full-splice_match	EIF1AX	ENST00000379607	4427	7	8	3524	multi-exon	FALSE	canonical	0	0	212	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2509_CONTIG_1	7	-	1091	9	full-splice_match	PON3	ENST00000265627	1105	9	-10	24	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	354	1062	22	1083	80	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5492_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	50	157	multi-exon	FALSE	canonical	0	0	1892	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2389_CONTIG_1	15	-	1902	2	genic_intron	novelGene_433	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	287	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4574_CONTIG_1	12	+	1328	3	novel_not_in_catalog	METTL7A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1108	2	NA	2	0	TRUE	NA	NA	0	B	coding	115	345	40	384	55	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5755_CONTIG_1	3	+	2195	17	full-splice_match	TF	ENST00000402696	2968	17	437	336	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_858_CONTIG_1	17	+	739	3	full-splice_match	CCL2	ENST00000225831	741	3	0	2	multi-exon	FALSE	canonical	0	0	259	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6543_CONTIG_1	12	+	999	2	full-splice_match	NR4A1	ENST00000548232	1101	2	0	102	multi-exon	FALSE	canonical	0	0	121	2	NA	0	0	FALSE	NA	NA	0	C	coding	292	876	124	999	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_971_CONTIG_1	1	-	1999	2	full-splice_match	CRP	ENST00000255030	2015	2	0	16	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	coding	224	672	105	776	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_480_CONTIG_1	4	-	669	5	novel_not_in_catalog	NDUFC1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	121	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7430_CONTIG_1	12	+	1031	9	novel_in_catalog	SLCO1B3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	923	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4997_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6711_CONTIG_1	4	-	1077	9	incomplete-splice_match	PLRG1	ENST00000302078	1673	15	585	11	5prime_fragment	TRUE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.282	0.718	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8057_CONTIG_1	22	+	1346	3	full-splice_match	ATF4	ENST00000396680	1420	3	-1	75	multi-exon	FALSE	canonical	0	0	507	2	NA	1	0	FALSE	NA	NA	0	C	coding	351	1053	282	1334	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2858_CONTIG_1	12	-	1591	4	incomplete-splice_match	STAT6	ENST00000555641	1804	9	1101	-888	5prime_fragment	FALSE	canonical	0	0	307	2	NA	0	0	FALSE	NA	NA	0	B	coding	119	357	438	794	60	0.512	0.488	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7701_CONTIG_1	12	+	1178	9	full-splice_match	GAPDH	ENST00000229239	1875	9	590	107	multi-exon	FALSE	canonical	0	0	1014	2	NA	0	0	FALSE	NA	NA	0	C	coding	335	1005	77	1081	20	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7232_CONTIG_1	11	+	388	4	incomplete-splice_match	CTR9	ENST00000361367	4586	25	2616	1582	internal_fragment	FALSE	canonical	0	0	254	2	NA	0	0	FALSE	NA	NA	0	A	coding	106	318	70	387	20	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6511_CONTIG_1	5	-	2193	13	novel_in_catalog	F12	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	300	900	1144	2043	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1204_CONTIG_1	1	+	1313	6	full-splice_match	HSD11B1	ENST00000367027	1319	6	0	6	multi-exon	FALSE	canonical	0	0	758	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	143	973	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7306_CONTIG_1	17	-	415	3	incomplete-splice_match	APOH	ENST00000205948	1176	8	515	246	internal_fragment	FALSE	canonical	0	0	127	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6319_CONTIG_1	16	-	1552	8	full-splice_match	ATP6V0D1	ENST00000290949	1716	8	119	45	multi-exon	TRUE	canonical	0	0	162	2	NA	1	0	FALSE	NA	NA	0	A	coding	351	1053	33	1085	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4208_CONTIG_1	12	-	1417	14	full-splice_match	HPD	ENST00000289004	1419	14	0	2	multi-exon	FALSE	canonical	0	0	39	2	NA	1	0	FALSE	NA	NA	0	C	coding	393	1179	37	1215	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8584_CONTIG_1	9	+	941	2	antisense	novelGene_ALDH1A1_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	156	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6161_CONTIG_1	2	+	1151	3	full-splice_match	ID2	ENST00000396290	1362	3	73	138	multi-exon	FALSE	canonical	0	0	522	2	NA	1	0	FALSE	NA	NA	0	C	coding	134	402	111	512	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2384_CONTIG_1	17	-	1104	7	incomplete-splice_match	LEPREL4	ENST00000393928	2601	8	871	626	5prime_fragment	FALSE	canonical	0	0	28	2	NA	0	0	FALSE	NA	NA	0	A	coding	211	633	92	724	55	0.292	0.708	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2468_CONTIG_1	20	+	1036	5	full-splice_match	CSTF1	ENST00000415828	1236	5	17	183	multi-exon	FALSE	canonical	0	0	828	2	NA	2	0	FALSE	NA	NA	0	A	coding	284	852	184	1035	30	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3927_CONTIG_1	11	+	1368	2	novel_in_catalog	SAA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	715	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2827_CONTIG_1	2	+	1304	6	full-splice_match	HNMT	ENST00000280097	3291	6	163	1824	multi-exon	FALSE	canonical	0	0	542	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8013_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	50	163	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4836_CONTIG_1	3	+	1623	11	full-splice_match	KNG1	ENST00000287611	1720	11	87	10	multi-exon	FALSE	canonical	0	0	1383	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	181	1461	30	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6234_CONTIG_1	21	-	607	4	full-splice_match	TCP10L	ENST00000472557	732	4	0	125	multi-exon	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	coding	126	378	228	605	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4359_CONTIG_1	8	-	1671	9	full-splice_match	CLU	ENST00000560366	2841	9	108	1062	multi-exon	FALSE	canonical	0	0	48	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	81	1424	10	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5226_CONTIG_1	14	-	1378	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	26	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8181_CONTIG_1	14	-	996	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	12	442	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	23	994	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1340_CONTIG_1	2	+	2250	14	novel_not_in_catalog	ERLEC1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1369	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5122_CONTIG_1	4	-	1405	6	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	100	2	NA	0	0	TRUE	NA	NA	0	C	coding	179	537	23	559	40	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1636_CONTIG_1	19	+	1618	8	incomplete-splice_match	NUCB1	ENST00000263273	2240	12	609	13	internal_fragment	FALSE	canonical	0	0	683	2	NA	0	0	FALSE	NA	NA	0	C	coding	176	528	260	787	40	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5073_CONTIG_1	11	-	881	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	18	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5469_CONTIG_1	19	+	1716	13	incomplete-splice_match	HPN	ENST00000392226	1783	14	69	-2	internal_fragment	FALSE	canonical	0	0	1391	2	NA	0	0	FALSE	NA	NA	0	B	coding	417	1251	177	1427	20	0.732	0.268	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8714_CONTIG_1	12	+	584	4	full-splice_match	ORMDL2	ENST00000243045	2141	4	145	1412	multi-exon	FALSE	canonical	0	0	376	2	NA	0	0	FALSE	NA	NA	0	A	coding	153	459	51	509	15	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_412_CONTIG_1	4	+	1307	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1142	2	NA	0	0	TRUE	NA	NA	0	C	coding	359	1077	40	1116	25	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3458_CONTIG_1	17	-	1909	6	full-splice_match	ACTG1	ENST00000331925	1994	6	72	13	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	76	1200	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_94_CONTIG_1	12	+	1453	8	incomplete-splice_match	DERA	ENST00000526530	1619	9	208	-42	internal_fragment	FALSE	canonical	0	0	820	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.222	0.778	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3849_CONTIG_1	8	-	357	4	incomplete-splice_match	HRSP12	ENST00000254878	1057	6	75	625	internal_fragment	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5611_CONTIG_1	18	+	616	4	full-splice_match	TTR	ENST00000237014	957	4	151	190	multi-exon	FALSE	canonical	0	0	362	2	NA	1	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4171_CONTIG_1	14	-	1092	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	371	multi-exon	FALSE	canonical	0	0	43	2	NA	2	0	FALSE	NA	NA	0	C	coding	348	1044	48	1091	25	0.204	0.796	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_783_CONTIG_1	19	+	656	4	full-splice_match	APOE	ENST00000252486	1208	4	42	510	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	195	585	70	654	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1220_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_384_CONTIG_1	19	+	861	4	full-splice_match	FTL	ENST00000331825	878	4	8	9	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5_CONTIG_1	4	-	1782	9	full-splice_match	ADH1B	ENST00000394887	4059	9	0	2277	multi-exon	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	69	1193	35	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7281_CONTIG_1	1	+	1049	4	full-splice_match	H3F3A	ENST00000366815	1088	4	42	-3	multi-exon	TRUE	canonical	0	0	397	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8017_CONTIG_1	16	+	965	2	incomplete-splice_match	HP	ENST00000565574	1187	5	236	-14	internal_fragment	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	146	829	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3930_CONTIG_1	22	-	1272	9	novel_not_in_catalog	MKL1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	234	2	NA	0	0	TRUE	NA	NA	0	A	coding	218	654	618	1271	35	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4034_CONTIG_1	19	+	866	4	full-splice_match	FTL	ENST00000331825	878	4	8	4	multi-exon	FALSE	canonical	0	0	574	2	NA	2	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_450_CONTIG_1	9	+	745	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	25	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1081_CONTIG_1	4	-	2262	7	full-splice_match	HSD17B13	ENST00000328546	2397	7	43	92	multi-exon	FALSE	canonical	0	0	232	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7988_CONTIG_1	7	-	494	2	full-splice_match	AZGP1	ENST00000477251	787	2	453	-160	multi-exon	FALSE	canonical	0	0	156	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1940_CONTIG_1	10	-	871	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	206	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6592_CONTIG_1	16	+	1026	3	full-splice_match	HP	ENST00000566821	3024	3	1939	59	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	235	918	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3425_CONTIG_1	5	-	2050	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	6	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4197_CONTIG_1	16	+	1206	5	full-splice_match	HP	ENST00000398131	1252	5	17	29	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	40	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7551_CONTIG_1	10	-	1394	4	full-splice_match	KLF6	ENST00000497571	4656	4	66	3196	multi-exon	FALSE	canonical	0	0	297	2	NA	1	0	FALSE	NA	NA	0	C	coding	283	849	196	1044	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1460_CONTIG_1	15	+	1434	14	full-splice_match	FAH	ENST00000561421	1549	14	115	0	multi-exon	FALSE	canonical	0	0	1223	2	NA	0	0	FALSE	NA	NA	0	C	coding	419	1257	44	1300	20	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_549_CONTIG_1	4	+	2058	15	full-splice_match	ALB	ENST00000295897	2263	15	48	157	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1711_CONTIG_1	16	+	393	4	novel_not_in_catalog	MT1X	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	241	2	NA	1	0	TRUE	NA	NA	0	C	coding	51	153	207	359	15	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2151_CONTIG_1	10	-	1504	8	novel_not_in_catalog	CYP2C8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	263	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8300_CONTIG_1	19	-	1338	8	incomplete-splice_match	SLC27A5	ENST00000601355	1987	10	695	-46	5prime_fragment	FALSE	canonical	0	0	147	2	NA	0	0	FALSE	NA	NA	0	C	coding	376	1128	33	1160	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7818_CONTIG_1	11	+	536	4	full-splice_match	APOC3	ENST00000227667	550	4	11	3	multi-exon	FALSE	canonical	0	0	230	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	52	348	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6018_CONTIG_1	4	+	1888	8	full-splice_match	FGB	ENST00000302068	1975	8	61	26	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1152_CONTIG_1	9	-	1075	9	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	110	330	640	969	15	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3628_CONTIG_1	7	+	1015	8	full-splice_match	GSTK1	ENST00000358406	1044	8	12	17	multi-exon	FALSE	canonical	0	0	690	2	NA	0	0	FALSE	NA	NA	0	C	coding	226	678	60	737	15	0.27	0.73	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8687_CONTIG_1	5	-	2017	6	full-splice_match	SEPP1	ENST00000511224	1853	6	0	-164	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6154_CONTIG_1	7	-	1245	10	novel_in_catalog	PON3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	402	1206	22	1227	75	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1944_CONTIG_1	9	-	1358	7	full-splice_match	FBP1	ENST00000375326	1462	7	-18	122	multi-exon	FALSE	canonical	0	0	385	2	NA	0	0	FALSE	NA	NA	0	C	coding	338	1014	216	1229	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2454_CONTIG_1	11	-	877	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	22	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1793_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2966_CONTIG_1	19	+	1164	4	full-splice_match	APOE	ENST00000252486	1208	4	42	2	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4703_CONTIG_1	3	-	1489	6	incomplete-splice_match	PARP9	ENST00000471785	3040	11	1464	87	5prime_fragment	TRUE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.172	0.828	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6467_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8511_CONTIG_1	19	+	508	6	full-splice_match	RPS19	ENST00000598742	2359	6	337	1514	multi-exon	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	36	470	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7749_CONTIG_1	1	-	1973	8	full-splice_match	PEX19	ENST00000440949	1972	8	-4	3	multi-exon	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	299	897	7	903	10	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5078_CONTIG_1	10	+	1635	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	32	multi-exon	FALSE	canonical	0	0	1330	2	NA	1	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	60	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2904_CONTIG_1	20	+	909	3	incomplete-splice_match	ZGPAT	ENST00000477340	2831	6	1867	55	internal_fragment	FALSE	canonical	0	0	603	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	176	739	10	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7131_CONTIG_1	18	+	398	3	incomplete-splice_match	TTR	ENST00000237014	957	4	298	261	internal_fragment	FALSE	canonical	0	0	215	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3709_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7985_CONTIG_1	16	-	396	3	full-splice_match	MT1G	ENST00000444837	406	3	0	10	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2222_CONTIG_1	12	-	853	8	incomplete-splice_match	A2M	ENST00000318602	4844	36	3985	6	5prime_fragment	FALSE	canonical	0	0	79	2	NA	0	0	FALSE	NA	NA	0	B	coding	161	483	263	745	10	0.72	0.28	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1403_CONTIG_1	3	+	497	3	incomplete-splice_match	TF	ENST00000461695	990	7	483	10	internal_fragment	FALSE	canonical	0	0	310	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_108_CONTIG_1	1	+	2071	11	novel_in_catalog	PLOD1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1186	2	NA	0	0	FALSE	NA	NA	0	B	coding	410	1230	110	1339	30	0.73	0.27	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4247_CONTIG_1	17	+	1063	5	novel_in_catalog	SAP30BP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	707	2	NA	0	0	FALSE	NA	NA	0	A	coding	162	486	401	886	15	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7363_CONTIG_1	4	+	1285	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	196	38	internal_fragment	FALSE	canonical	0	0	1190	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	301	1164	40	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5630_CONTIG_1	7	-	2419	11	novel_not_in_catalog	PNPLA8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	57	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.936	0.064	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2770_CONTIG_1	12	-	1477	5	full-splice_match	RND1	ENST00000309739	1681	5	28	176	multi-exon	FALSE	canonical	0	0	223	2	NA	0	0	FALSE	NA	NA	0	C	coding	232	696	104	799	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4728_CONTIG_1	4	+	1612	12	full-splice_match	TDO2	ENST00000536354	1701	12	-3	92	multi-exon	FALSE	canonical	0	0	1134	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2720_CONTIG_1	5	-	1108	7	novel_not_in_catalog	FNIP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	184	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7476_CONTIG_1	4	+	510	3	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	222	2	NA	0	0	FALSE	NA	NA	0	C	coding	162	486	24	509	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5912_CONTIG_1	8	+	2192	2	full-splice_match	THEM6	ENST00000336138	2259	2	71	-4	multi-exon	FALSE	canonical	0	0	586	2	NA	1	0	FALSE	NA	NA	0	A	coding	208	624	74	697	5	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8615_CONTIG_1	18	-	753	5	full-splice_match	CYB5A	ENST00000340533	834	5	76	5	multi-exon	FALSE	canonical	0	0	194	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	66	467	20	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4430_CONTIG_1	4	+	317	2	incomplete-splice_match	ALB	ENST00000415165	1483	11	800	366	internal_fragment	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	coding	81	243	73	315	25	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7914_CONTIG_1	5	+	2046	3	incomplete-splice_match	CDH6	ENST00000265071	8476	12	1831	4599	internal_fragment	FALSE	canonical	0	0	316	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6662_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	452	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8228_CONTIG_1	12	+	1204	5	incomplete-splice_match	AMDHD1	ENST00000548310	1841	8	580	57	internal_fragment	FALSE	canonical	0	0	427	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_965_CONTIG_1	4	+	1506	8	full-splice_match	FGB	ENST00000302068	1975	8	56	413	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_481_CONTIG_1	6	+	1197	11	incomplete-splice_match	CFB	ENST00000425368	2862	18	1381	284	internal_fragment	FALSE	canonical	0	0	1088	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	225	1196	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1462_CONTIG_1	1	-	1123	8	full-splice_match	TMEM59	ENST00000234831	1696	8	234	339	multi-exon	FALSE	canonical	0	0	205	2	NA	0	0	FALSE	NA	NA	0	C	coding	117	351	635	985	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4969_CONTIG_1	18	-	638	5	full-splice_match	CYB5A	ENST00000340533	834	5	83	113	multi-exon	FALSE	canonical	0	0	187	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	59	460	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2487_CONTIG_1	6	+	692	2	incomplete-splice_match	FBXO9	ENST00000473318	574	5	-513	395	internal_fragment	FALSE	canonical	0	0	598	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6_CONTIG_1	9	-	1233	10	full-splice_match	AMBP	ENST00000265132	1434	10	151	50	multi-exon	FALSE	canonical	0	0	229	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	113	1168	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7305_CONTIG_1	17	-	1318	9	full-splice_match	ASGR1	ENST00000269299	1504	9	175	11	multi-exon	FALSE	canonical	0	0	200	2	NA	0	0	FALSE	NA	NA	0	C	coding	291	873	226	1098	30	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8720_CONTIG_1	4	-	1561	10	full-splice_match	FGG	ENST00000404648	1760	10	193	6	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_243_CONTIG_1	2	-	1172	12	novel_in_catalog	ANKRD36B	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	A	coding	167	501	286	786	40	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2683_CONTIG_1	6	+	1407	11	full-splice_match	SLC22A1	ENST00000366963	1948	11	509	32	multi-exon	FALSE	canonical	0	0	1236	2	NA	0	0	FALSE	NA	NA	0	C	coding	362	1086	215	1300	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7814_CONTIG_1	4	-	1968	3	incomplete-splice_match	FGA	ENST00000403106	2248	5	261	19	5prime_fragment	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	C	coding	575	1725	26	1750	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_33_CONTIG_1	9	+	760	6	full-splice_match	ORM1	ENST00000259396	802	6	42	0	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5147_CONTIG_1	4	-	1230	9	novel_in_catalog	GC	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	213	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4170_CONTIG_1	4	+	2001	15	full-splice_match	ALB	ENST00000295897	2263	15	50	212	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5956_CONTIG_1	4	+	2058	15	full-splice_match	ALB	ENST00000295897	2263	15	48	157	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1017_CONTIG_1	14	+	600	2	full-splice_match	ANG	ENST00000397990	742	2	4	138	multi-exon	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	117	557	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7117_CONTIG_1	11	-	2211	9	full-splice_match	HSPA8	ENST00000534624	2463	9	196	56	multi-exon	FALSE	canonical	0	0	76	2	NA	1	0	FALSE	NA	NA	0	C	coding	646	1938	82	2019	40	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6685_CONTIG_1	3	-	405	2	incomplete-splice_match	SUMF1	ENST00000458465	1102	5	582	115	5prime_fragment	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3604_CONTIG_1	12	+	991	6	full-splice_match	ARL6IP4	ENST00000315580	1644	6	643	10	multi-exon	FALSE	canonical	0	0	711	2	NA	0	0	FALSE	NA	NA	0	A	coding	237	711	55	765	15	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6509_CONTIG_1	7	+	916	6	full-splice_match	ARF5	ENST00000000233	1103	6	102	85	multi-exon	FALSE	canonical	0	0	508	2	NA	0	0	FALSE	NA	NA	0	C	coding	180	540	53	592	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2321_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	326	7	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	41	841	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5471_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	50	157	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6635_CONTIG_1	5	-	591	3	full-splice_match	HINT1	ENST00000304043	1081	3	216	274	multi-exon	FALSE	canonical	0	0	175	2	NA	0	0	FALSE	NA	NA	0	C	coding	126	378	65	442	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4528_CONTIG_1	17	+	886	6	full-splice_match	ICT1	ENST00000301585	890	6	4	0	multi-exon	FALSE	canonical	0	0	545	2	NA	0	0	FALSE	NA	NA	0	A	coding	206	618	10	627	10	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_10_CONTIG_1	15	-	1634	6	novel_in_catalog	GATM	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	192	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3131_CONTIG_1	5	-	1977	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	79	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7260_CONTIG_1	2	+	715	3	incomplete-splice_match	HADHB	ENST00000405867	1588	14	893	-20	internal_fragment	FALSE	canonical	0	0	200	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5353_CONTIG_1	4	+	330	4	incomplete-splice_match	ALB	ENST00000505649	1509	11	229	950	internal_fragment	FALSE	canonical	0	0	300	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1068_CONTIG_1	4	+	1078	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	848	3prime_fragment	FALSE	canonical	0	0	882	2	NA	0	0	FALSE	NA	NA	0	C	coding	346	1038	40	1077	15	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4224_CONTIG_1	11	-	835	3	novel_in_catalog	SAA4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	406	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	316	705	40	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5024_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7114_CONTIG_1	9	-	1497	6	full-splice_match	AGPAT2	ENST00000371696	1512	6	14	1	multi-exon	FALSE	canonical	0	0	234	2	NA	0	0	FALSE	NA	NA	0	C	coding	278	834	53	886	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7151_CONTIG_1	3	+	1533	11	incomplete-splice_match	TF	ENST00000264998	2143	16	582	28	internal_fragment	FALSE	canonical	0	0	1355	2	NA	0	0	FALSE	NA	NA	0	C	coding	424	1272	116	1387	45	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_683_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8695_CONTIG_1	1	-	690	3	novel_not_in_catalog	AGT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	40	2	NA	0	0	TRUE	NA	NA	0	C	coding	103	309	44	352	10	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4726_CONTIG_1	3	+	2293	17	full-splice_match	TF	ENST00000402696	2968	17	437	238	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5378_CONTIG_1	21	-	1676	2	full-splice_match	CLDN14	ENST00000399135	1752	2	1	75	multi-exon	FALSE	canonical	0	0	595	2	NA	0	0	FALSE	NA	NA	0	A	coding	239	717	677	1393	15	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4063_CONTIG_1	10	+	1260	11	full-splice_match	GLRX3	ENST00000331244	1262	11	-11	13	multi-exon	FALSE	canonical	0	0	990	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7702_CONTIG_1	X	+	1023	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	42	multi-exon	FALSE	canonical	0	0	524	2	NA	1	0	FALSE	NA	NA	0	C	coding	171	513	180	692	30	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1338_CONTIG_1	4	+	1918	15	full-splice_match	ALB	ENST00000295897	2263	15	48	297	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3797_CONTIG_1	14	-	985	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	478	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	312	936	48	983	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6820_CONTIG_1	16	+	1118	3	full-splice_match	HP	ENST00000566821	3024	3	1900	6	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8524_CONTIG_1	19	-	1065	5	incomplete-splice_match	A1BG	ENST00000263100	1722	8	567	90	5prime_fragment	FALSE	canonical	0	0	108	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	132	980	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1062_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2508_CONTIG_1	7	-	1808	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	1	multi-exon	FALSE	canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	25	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8567_CONTIG_1	4	+	865	7	incomplete-splice_match	ALB	ENST00000511370	1519	11	59	595	internal_fragment	FALSE	canonical	0	0	763	2	NA	0	0	FALSE	NA	NA	0	C	coding	142	426	438	863	45	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8480_CONTIG_1	4	+	1081	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	847	3prime_fragment	FALSE	canonical	0	0	884	2	NA	0	0	FALSE	NA	NA	0	C	coding	346	1038	42	1079	10	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4471_CONTIG_1	19	+	1094	4	full-splice_match	GADD45B	ENST00000215631	1373	4	259	20	multi-exon	FALSE	canonical	0	0	342	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	19	453	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2644_CONTIG_1	16	-	455	5	full-splice_match	RPS15A	ENST00000563390	525	5	49	21	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	31	420	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3105_CONTIG_1	10	-	856	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	221	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6114_CONTIG_1	4	+	350	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	866	267	internal_fragment	FALSE	canonical	0	0	251	2	NA	0	0	FALSE	NA	NA	0	C	coding	114	342	7	348	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6080_CONTIG_1	15	+	947	2	genic_intron	novelGene_327	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	396	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6615_CONTIG_1	2	-	1830	13	full-splice_match	PDIA6	ENST00000272227	2338	13	36	472	multi-exon	FALSE	canonical	0	0	131	2	NA	0	0	FALSE	NA	NA	0	C	coding	440	1320	113	1432	40	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4181_CONTIG_1	4	+	1661	12	full-splice_match	TDO2	ENST00000536354	1701	12	-3	43	multi-exon	FALSE	canonical	0	0	1134	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_196_CONTIG_1	4	+	1164	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1061	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5085_CONTIG_1	1	-	1908	5	full-splice_match	AGT	ENST00000366667	2291	5	171	212	multi-exon	FALSE	canonical	0	0	41	2	NA	0	0	FALSE	NA	NA	0	C	coding	485	1455	45	1499	10	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2247_CONTIG_1	14	-	982	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	481	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	311	933	48	980	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3080_CONTIG_1	7	+	1046	6	full-splice_match	ARF5	ENST00000000233	1103	6	39	18	multi-exon	FALSE	canonical	0	0	571	2	NA	1	0	FALSE	NA	NA	0	C	coding	180	540	116	655	10	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4840_CONTIG_1	16	+	1206	4	full-splice_match	HPR	ENST00000228226	1158	4	114	-162	multi-exon	FALSE	canonical	0	0	265	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	358	1041	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_916_CONTIG_1	11	+	1429	6	incomplete-splice_match	SERPING1	ENST00000378324	1751	7	291	31	internal_fragment	FALSE	canonical	0	0	940	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	169	1191	50	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4408_CONTIG_1	10	-	389	2	incomplete-splice_match	NRP1	ENST00000374822	2213	12	-22	1846	internal_fragment	FALSE	canonical	0	0	355	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.422	0.578	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6589_CONTIG_1	15	-	741	5	full-splice_match	SRP14	ENST00000267884	1077	5	27	309	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	A	coding	136	408	46	453	15	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2221_CONTIG_1	3	+	277	2	incomplete-splice_match	EXOSC7	ENST00000265564	1055	8	767	11	internal_fragment	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1092_CONTIG_1	3	+	1938	15	incomplete-splice_match	TF	ENST00000264998	2143	16	147	58	internal_fragment	FALSE	canonical	0	0	1790	2	NA	0	0	FALSE	NA	NA	0	C	coding	571	1713	110	1822	5	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1934_CONTIG_1	17	-	1250	8	novel_in_catalog	ASGR1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	269	2	NA	3	0	FALSE	NA	NA	0	C	coding	291	873	200	1072	25	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3720_CONTIG_1	17	+	495	5	incomplete-splice_match	RPL19	ENST00000225430	732	6	34	203	3prime_fragment	FALSE	canonical	0	0	384	2	NA	0	0	FALSE	NA	NA	0	C	coding	155	465	29	493	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5578_CONTIG_1	14	-	1038	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	425	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	330	990	48	1037	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6207_CONTIG_1	16	+	1230	5	full-splice_match	HP	ENST00000398131	1252	5	17	5	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8282_CONTIG_1	22	-	1147	8	incomplete-splice_match	LMF2	ENST00000380796	2260	13	9	1104	internal_fragment	FALSE	canonical	0	0	116	2	NA	1	1	FALSE	NA	NA	0	A	coding	375	1125	23	1147	10	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7138_CONTIG_1	9	+	751	6	full-splice_match	ORM1	ENST00000259396	802	6	42	9	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1236_CONTIG_1	14	+	309	3	genic_intron	novelGene_143	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	244	2	NA	1	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6280_CONTIG_1	10	-	2021	10	full-splice_match	OAT	ENST00000368845	2048	10	16	11	multi-exon	FALSE	canonical	0	0	48	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4072_CONTIG_1	4	+	2007	15	full-splice_match	ALB	ENST00000295897	2263	15	50	206	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5506_CONTIG_1	15	-	553	2	novel_not_in_catalog	EMC7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	262	2	NA	0	0	FALSE	NA	NA	0	A	coding	130	390	27	416	50	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1342_CONTIG_1	4	+	1077	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	241	165	internal_fragment	FALSE	canonical	0	0	1009	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	188	1051	30	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2922_CONTIG_1	4	+	1973	15	full-splice_match	ALB	ENST00000295897	2263	15	48	242	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3231_CONTIG_1	16	-	669	6	full-splice_match	ARL6IP1	ENST00000304414	2407	6	129	1609	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	195	585	84	668	80	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3305_CONTIG_1	17	+	953	8	novel_in_catalog	KPNB1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	902	2	NA	0	0	FALSE	NA	NA	0	A	coding	269	807	94	900	35	0.214	0.786	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1936_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5376_CONTIG_1	19	-	442	3	full-splice_match	NDUFB7	ENST00000215565	531	3	-9	98	multi-exon	FALSE	canonical	0	0	183	2	NA	0	0	FALSE	NA	NA	0	A	coding	123	369	72	440	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2299_CONTIG_1	4	+	1573	8	full-splice_match	FGB	ENST00000302068	1975	8	55	347	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6283_CONTIG_1	16	+	1978	12	full-splice_match	CES2	ENST00000317091	3927	12	1102	847	multi-exon	FALSE	canonical	0	0	1567	2	NA	0	0	FALSE	NA	NA	0	C	coding	559	1677	75	1751	20	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_365_CONTIG_1	13	-	1140	5	full-splice_match	HMGB1	ENST00000341423	2339	5	32	1167	multi-exon	FALSE	canonical	0	0	138	2	NA	2	0	FALSE	NA	NA	0	A	coding	215	645	153	797	35	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2946_CONTIG_1	7	-	1102	7	full-splice_match	TMEM176B	ENST00000326442	1129	7	11	16	multi-exon	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	C	coding	270	810	62	871	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6529_CONTIG_1	19	-	300	2	incomplete-splice_match	C3	ENST00000245907	5263	41	1369	3594	internal_fragment	FALSE	canonical	0	0	203	2	NA	0	0	FALSE	NA	NA	0	B	coding	85	255	45	299	0	0.558	0.442	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3476_CONTIG_1	20	+	855	3	incomplete-splice_match	ZGPAT	ENST00000328969	1945	7	1056	34	internal_fragment	FALSE	canonical	0	0	528	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	101	664	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7470_CONTIG_1	11	+	1259	2	novel_not_in_catalog	SAA1	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	168	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_452_CONTIG_1	4	+	1174	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	248	61	internal_fragment	FALSE	canonical	0	0	1070	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	181	1044	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6401_CONTIG_1	1	-	1919	9	full-splice_match	CRYZ	ENST00000340866	1888	9	-31	0	multi-exon	FALSE	canonical	0	0	106	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2708_CONTIG_1	1	-	1853	11	full-splice_match	RBM34	ENST00000366606	1852	11	0	-1	multi-exon	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3665_CONTIG_1	10	+	1225	9	full-splice_match	AKR1C1	ENST00000380872	6705	9	161	5319	multi-exon	FALSE	canonical	0	0	960	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	32	1000	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8150_CONTIG_1	4	+	1999	15	full-splice_match	ALB	ENST00000295897	2263	15	50	214	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8288_CONTIG_1	1	-	1317	2	novel_not_in_catalog	ANKRD36BP1	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	1283	2	NA	1	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.608	0.392	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6751_CONTIG_1	16	+	1226	5	full-splice_match	HP	ENST00000398131	1252	5	11	15	multi-exon	FALSE	canonical	0	0	298	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	34	1074	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2912_CONTIG_1	4	+	1548	8	full-splice_match	FGB	ENST00000302068	1975	8	55	372	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_333_CONTIG_1	7	-	910	4	novel_not_in_catalog	AZGP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	87	2	NA	0	0	TRUE	NA	NA	0	C	coding	158	474	21	494	35	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1020_CONTIG_1	17	-	1312	7	incomplete-splice_match	PRPF8	ENST00000304992	7295	43	5958	25	5prime_fragment	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	A	coding	322	966	196	1161	55	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8242_CONTIG_1	8	-	902	7	novel_in_catalog	EEF1D	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	68	2	NA	0	0	FALSE	NA	NA	0	C	coding	257	771	73	843	10	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7508_CONTIG_1	11	-	1575	10	full-splice_match	HPX	ENST00000265983	1652	10	77	0	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3082_CONTIG_1	4	-	1497	10	full-splice_match	FGG	ENST00000404648	1760	10	193	70	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2456_CONTIG_1	14	-	1013	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	450	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4150_CONTIG_1	1	-	720	5	full-splice_match	MASP2	ENST00000400898	726	5	4	2	multi-exon	FALSE	canonical	0	0	27	2	NA	0	0	FALSE	NA	NA	0	C	coding	185	555	23	577	10	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4535_CONTIG_1	11	+	1734	10	incomplete-splice_match	PTDSS2	ENST00000308020	2445	12	510	201	internal_fragment	FALSE	canonical	0	0	967	2	NA	0	0	FALSE	NA	NA	0	A	coding	278	834	294	1127	15	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7144_CONTIG_1	20	-	417	2	full-splice_match	RRBP1	ENST00000398782	1191	2	75	699	multi-exon	FALSE	canonical	0	0	193	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4200_CONTIG_1	14	-	516	6	incomplete-splice_match	NDRG2	ENST00000553593	978	11	463	-1	5prime_fragment	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	B	coding	114	342	56	397	20	0.558	0.442	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8420_CONTIG_1	16	+	1212	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	396	2	NA	1	1	TRUE	NA	NA	0	C	coding	350	1050	28	1077	45	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5826_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	48	161	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7670_CONTIG_1	12	-	749	6	incomplete-splice_match	A2M	ENST00000318602	4844	36	3788	307	internal_fragment	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	B	coding	202	606	142	747	30	0.602	0.398	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2816_CONTIG_1	19	-	1334	13	incomplete-splice_match	C3	ENST00000245907	5263	41	3798	131	5prime_fragment	FALSE	canonical	0	0	105	2	NA	1	0	FALSE	NA	NA	0	B	coding	390	1170	115	1284	5	0.604	0.396	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4962_CONTIG_1	1	+	1089	6	full-splice_match	C4BPB	ENST00000367076	1113	6	24	0	multi-exon	FALSE	canonical	0	0	884	2	NA	1	0	FALSE	NA	NA	0	C	coding	242	726	297	1022	15	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8393_CONTIG_1	4	+	2023	15	full-splice_match	ALB	ENST00000295897	2263	15	49	191	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	45	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6956_CONTIG_1	3	-	1330	2	novel_not_in_catalog	ZBTB20	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	932	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3157_CONTIG_1	2	+	2294	11	novel_not_in_catalog	MSH2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1876	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.424	0.576	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5551_CONTIG_1	12	-	1556	7	full-splice_match	TMBIM4	ENST00000358230	2952	7	45	1351	multi-exon	FALSE	canonical	0	0	173	2	NA	3	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_67_CONTIG_1	19	+	785	2	novel_in_catalog	THOP1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	312	2	NA	0	0	FALSE	NA	NA	0	A	coding	114	342	130	471	55	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6932_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2466_CONTIG_1	8	-	1670	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1061	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	5	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5701_CONTIG_1	22	-	1653	9	full-splice_match	CYP2D6	ENST00000360608	1684	9	27	4	multi-exon	FALSE	canonical	0	0	268	2	NA	0	0	FALSE	NA	NA	0	C	coding	497	1491	89	1579	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4692_CONTIG_1	11	-	681	2	incomplete-splice_match	APOA1	ENST00000359492	932	4	228	23	5prime_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	158	474	171	644	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2530_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1542_CONTIG_1	4	+	918	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	381	184	internal_fragment	FALSE	canonical	0	0	869	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	48	911	40	0.204	0.796	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5710_CONTIG_1	14	-	1415	7	full-splice_match	GMFB	ENST00000358056	4301	7	187	2699	multi-exon	FALSE	canonical	0	0	85	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.24	0.76	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7206_CONTIG_1	9	-	1216	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	46	multi-exon	FALSE	canonical	0	0	208	2	NA	1	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4061_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1222_CONTIG_1	18	+	614	4	full-splice_match	TTR	ENST00000237014	957	4	151	192	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1159_CONTIG_1	6	-	629	3	incomplete-splice_match	EEF1A1	ENST00000331523	1923	8	1196	98	5prime_fragment	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	52	435	20	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_661_CONTIG_1	20	+	1794	15	full-splice_match	LBP	ENST00000217407	1961	15	126	41	multi-exon	FALSE	canonical	0	0	1436	2	NA	0	0	FALSE	NA	NA	0	C	coding	481	1443	36	1478	40	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3017_CONTIG_1	3	+	1568	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	4	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6770_CONTIG_1	16	-	968	6	incomplete-splice_match	ROGDI	ENST00000587843	1362	10	352	42	5prime_fragment	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	A	coding	142	426	91	516	20	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1837_CONTIG_1	1	+	812	2	novel_in_catalog	C4BPA	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	773	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6452_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	50	171	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6052_CONTIG_1	12	+	2323	10	incomplete-splice_match	C1S	ENST00000360817	2635	12	378	-66	internal_fragment	FALSE	canonical	0	0	1168	2	NA	2	0	FALSE	NA	NA	0	B	coding	521	1563	400	1962	45	0.69	0.31	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7372_CONTIG_1	19	+	808	4	full-splice_match	FTL	ENST00000331825	878	4	8	62	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7360_CONTIG_1	3	-	1633	15	full-splice_match	LRRFIP2	ENST00000440230	1989	15	388	-32	multi-exon	FALSE	canonical	0	0	103	2	NA	0	0	FALSE	NA	NA	0	A	coding	424	1272	226	1497	40	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7271_CONTIG_1	GL000220.1	+	803	2	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	281	2	NA	1	1	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	0	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_465_CONTIG_1	X	+	742	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1429	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3340_CONTIG_1	3	+	1708	14	incomplete-splice_match	TF	ENST00000264998	2143	16	279	156	internal_fragment	FALSE	canonical	0	0	1658	2	NA	0	0	FALSE	NA	NA	0	C	coding	424	1272	419	1690	30	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2971_CONTIG_1	3	+	2310	17	full-splice_match	TF	ENST00000402696	2968	17	437	221	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8713_CONTIG_1	X	-	1834	8	full-splice_match	TSPAN6	ENST00000373020	2206	8	0	372	multi-exon	FALSE	canonical	0	0	199	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6383_CONTIG_1	4	+	1725	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	163	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3374_CONTIG_1	12	-	479	2	incomplete-splice_match	C1R	ENST00000540610	519	4	430	-390	internal_fragment	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	120	360	32	391	25	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2270_CONTIG_1	16	+	1193	9	incomplete-splice_match	METTL22	ENST00000381920	1552	11	57	302	3prime_fragment	FALSE	canonical	0	0	1108	2	NA	0	0	FALSE	NA	NA	0	A	coding	330	990	202	1191	25	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8234_CONTIG_1	1	-	414	4	full-splice_match	APOA2	ENST00000468465	421	4	7	0	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4101_CONTIG_1	4	+	725	4	incomplete-splice_match	FGB	ENST00000502545	1320	7	-26	621	3prime_fragment	FALSE	canonical	0	0	497	2	NA	0	0	FALSE	NA	NA	0	C	coding	239	717	8	724	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4960_CONTIG_1	6	+	541	6	full-splice_match	RPS18	ENST00000439602	613	6	67	5	multi-exon	FALSE	canonical	0	0	426	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	44	499	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5565_CONTIG_1	X	+	1795	9	novel_not_in_catalog	CD99	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1264	2	NA	0	0	FALSE	NA	NA	0	A	coding	97	291	38	328	10	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5070_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	50	167	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2906_CONTIG_1	1	-	514	3	full-splice_match	APOA2	ENST00000463273	469	3	86	-131	multi-exon	FALSE	canonical	0	0	150	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	99	398	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1101_CONTIG_1	1	+	873	2	full-splice_match	G0S2	ENST00000367029	866	2	-7	0	multi-exon	FALSE	canonical	0	0	137	2	NA	2	0	FALSE	NA	NA	0	A	coding	103	309	170	478	25	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8132_CONTIG_1	4	+	1570	8	full-splice_match	FGB	ENST00000302068	1975	8	63	342	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	1	1473	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_168_CONTIG_1	14	+	1843	9	full-splice_match	GMPR2	ENST00000420554	1864	9	-2	23	multi-exon	FALSE	canonical	0	0	1212	2	NA	0	0	FALSE	NA	NA	0	A	coding	348	1044	356	1399	30	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4626_CONTIG_1	9	+	884	5	novel_in_catalog	ORM1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	727	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	37	483	25	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1021_CONTIG_1	19	-	1751	2	full-splice_match	LRG1	ENST00000306390	3036	2	438	847	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	24	1064	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8498_CONTIG_1	6	+	1378	8	full-splice_match	ARG1	ENST00000368087	1532	8	82	72	multi-exon	FALSE	canonical	0	0	859	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5832_CONTIG_1	6	+	500	6	full-splice_match	RPS12	ENST00000230050	631	6	128	3	multi-exon	FALSE	canonical	0	0	418	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	83	478	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4588_CONTIG_1	20	-	1639	8	novel_not_in_catalog	TGM2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	72	2	NA	0	0	TRUE	NA	NA	0	B	coding	401	1203	70	1272	25	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_447_CONTIG_1	19	+	1101	4	novel_not_in_catalog	AC006129.2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	499	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2760_CONTIG_1	9	-	1249	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	13	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2092_CONTIG_1	21	+	636	5	full-splice_match	SOD1	ENST00000270142	966	5	69	261	multi-exon	FALSE	canonical	0	0	436	2	NA	1	0	FALSE	NA	NA	0	C	coding	154	462	80	541	30	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3711_CONTIG_1	10	-	1548	12	incomplete-splice_match	ANXA7	ENST00000372921	2452	13	56	848	5prime_fragment	FALSE	canonical	0	0	55	2	NA	1	0	FALSE	NA	NA	0	A	coding	426	1278	122	1399	25	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7393_CONTIG_1	7	-	1010	4	incomplete-splice_match	KRIT1	ENST00000475770	2411	12	1431	-30	5prime_fragment	FALSE	canonical	0	0	29	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6737_CONTIG_1	3	+	461	5	full-splice_match	RPL35A	ENST00000464167	1437	5	207	769	multi-exon	FALSE	canonical	0	0	369	2	NA	0	0	FALSE	NA	NA	0	C	coding	110	330	61	390	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5213_CONTIG_1	7	-	1509	10	novel_in_catalog	PON3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	402	1206	17	1222	20	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_101_CONTIG_1	10	-	1525	10	novel_not_in_catalog	MAT1A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	326	2	NA	1	0	TRUE	NA	NA	0	B	coding	398	1194	236	1429	40	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7906_CONTIG_1	11	+	1058	7	novel_in_catalog	F2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	852	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	247	993	45	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_652_CONTIG_1	5	+	1884	5	full-splice_match	ISOC1	ENST00000173527	1940	5	1	55	multi-exon	FALSE	canonical	0	0	765	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4752_CONTIG_1	9	+	1458	15	full-splice_match	ASS1	ENST00000352480	1564	15	35	71	multi-exon	FALSE	canonical	0	0	1230	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	38	1273	10	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3261_CONTIG_1	1	-	1500	2	novel_not_in_catalog	ERRFI1	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	415	2	NA	1	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5281_CONTIG_1	3	+	1290	2	antisense	novelGene_PLOD2_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	256	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5719_CONTIG_1	11	-	1181	10	full-splice_match	FIBP	ENST00000357519	1248	10	43	24	multi-exon	FALSE	canonical	0	0	163	2	NA	1	0	FALSE	NA	NA	0	A	coding	357	1071	79	1149	30	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6528_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	51	159	multi-exon	FALSE	canonical	0	0	1891	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5251_CONTIG_1	17	-	1890	6	full-splice_match	ACTG1	ENST00000331925	1994	6	72	32	multi-exon	FALSE	canonical	0	0	69	2	NA	1	0	FALSE	NA	NA	0	C	coding	375	1125	76	1200	55	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2472_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7819_CONTIG_1	19	+	408	4	full-splice_match	APOC1	ENST00000252491	461	4	44	9	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3976_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7012_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	48	161	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1248_CONTIG_1	7	+	1927	3	full-splice_match	DNAJB9	ENST00000249356	2715	3	336	452	multi-exon	FALSE	canonical	0	0	427	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5438_CONTIG_1	4	-	1281	9	full-splice_match	ADH1C	ENST00000515683	1740	9	334	125	multi-exon	FALSE	canonical	0	0	36	2	NA	1	0	FALSE	NA	NA	0	C	coding	166	498	646	1143	45	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1839_CONTIG_1	14	+	1067	2	antisense	novelGene_NEMF_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	865	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.36	0.64	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4647_CONTIG_1	19	-	318	2	incomplete-splice_match	CYP2A6	ENST00000301141	1764	9	0	1446	internal_fragment	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	22	318	25	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2676_CONTIG_1	19	-	916	4	novel_not_in_catalog	PHLDB3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	220	2	NA	1	0	FALSE	NA	NA	0	A	coding	192	576	8	583	15	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2621_CONTIG_1	4	+	1646	8	full-splice_match	FGB	ENST00000302068	1975	8	61	268	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4708_CONTIG_1	12	-	1402	9	novel_not_in_catalog	PHB2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	169	915	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1420_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	50	170	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_502_CONTIG_1	1	+	1050	8	novel_not_in_catalog	FMO3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	946	2	NA	0	0	TRUE	NA	NA	0	B	coding	312	936	46	981	45	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4448_CONTIG_1	12	-	1992	9	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	48	2	NA	1	0	TRUE	NA	NA	0	C	coding	621	1863	47	1909	40	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7954_CONTIG_1	14	+	767	4	novel_not_in_catalog	SERPINA3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	624	2	NA	0	0	TRUE	NA	NA	0	C	coding	224	672	5	676	15	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_761_CONTIG_1	18	-	1836	3	incomplete-splice_match	LMAN1	ENST00000587940	442	4	-1510	116	internal_fragment	FALSE	canonical	0	0	1688	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.282	0.718	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4725_CONTIG_1	10	+	1737	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	123	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4054_CONTIG_1	4	+	1569	8	full-splice_match	FGB	ENST00000302068	1975	8	56	350	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7159_CONTIG_1	3	+	333	4	novel_not_in_catalog	TMA7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_206_CONTIG_1	17	-	1188	6	incomplete-splice_match	VTN	ENST00000226218	2149	8	900	61	5prime_fragment	FALSE	canonical	0	0	248	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	638	1153	5	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4240_CONTIG_1	9	-	1050	9	novel_in_catalog	AMBP	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	235	939	20	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7868_CONTIG_1	4	-	1425	9	incomplete-splice_match	FGG	ENST00000404648	1760	10	321	14	5prime_fragment	FALSE	canonical	0	0	42	2	NA	2	0	FALSE	NA	NA	0	C	coding	334	1002	229	1230	35	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7157_CONTIG_1	X	+	1470	8	novel_not_in_catalog	OGT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	982	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5970_CONTIG_1	4	+	2044	15	full-splice_match	ALB	ENST00000295897	2263	15	48	171	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	50	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2105_CONTIG_1	15	+	938	4	full-splice_match	B2M	ENST00000558401	1715	4	36	741	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_510_CONTIG_1	2	+	1525	4	novel_not_in_catalog	UGT1A3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	545	2	NA	0	0	TRUE	NA	NA	0	B	coding	169	507	334	840	10	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2675_CONTIG_1	19	+	2063	6	full-splice_match	EGLN2	ENST00000303961	2102	6	33	6	multi-exon	FALSE	canonical	0	0	1445	2	NA	0	0	FALSE	NA	NA	0	C	coding	374	1122	377	1498	25	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8122_CONTIG_1	10	+	1672	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	-5	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6397_CONTIG_1	4	-	1562	10	full-splice_match	FGG	ENST00000404648	1760	10	193	5	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7129_CONTIG_1	12	-	1730	2	full-splice_match	APOF	ENST00000541105	1682	2	-34	-14	multi-exon	FALSE	canonical	0	0	128	2	NA	1	0	FALSE	NA	NA	0	C	coding	349	1047	44	1090	50	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1541_CONTIG_1	19	-	1194	8	incomplete-splice_match	NAPA	ENST00000594001	1417	9	237	-14	5prime_fragment	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	B	coding	182	546	24	569	70	0.656	0.344	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8472_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-15	446	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	50	1018	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2996_CONTIG_1	12	-	1540	7	novel_in_catalog	A2M	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	B	coding	287	861	49	909	40	0.722	0.278	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7665_CONTIG_1	19	+	727	4	full-splice_match	ALKBH7	ENST00000245812	1110	4	366	17	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	A	coding	221	663	23	685	30	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6022_CONTIG_1	12	+	461	2	incomplete-splice_match	GAPDH	ENST00000396859	1256	8	825	-30	internal_fragment	FALSE	canonical	0	0	192	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6792_CONTIG_1	5	-	2018	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	38	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.286	0.714	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7487_CONTIG_1	17	+	916	2	full-splice_match	UBB	ENST00000302182	1225	2	296	13	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	229	687	97	783	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7657_CONTIG_1	6	-	1067	7	incomplete-splice_match	TNXB	ENST00000490077	2756	14	1652	37	5prime_fragment	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	A	coding	241	723	185	907	40	0.338	0.662	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3489_CONTIG_1	4	+	1525	8	full-splice_match	FGB	ENST00000302068	1975	8	57	393	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8024_CONTIG_1	19	-	1109	9	novel_in_catalog	CAPN12	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	109	2	NA	1	0	FALSE	NA	NA	0	A	coding	180	540	216	755	10	0.23	0.77	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5302_CONTIG_1	19	+	1291	10	full-splice_match	PRMT1	ENST00000391851	1393	10	86	16	multi-exon	FALSE	canonical	0	0	1021	2	NA	0	0	FALSE	NA	NA	0	A	coding	353	1059	44	1102	20	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3574_CONTIG_1	14	+	1391	12	novel_not_in_catalog	ASPG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1208	2	NA	1	0	FALSE	NA	NA	0	B	coding	324	972	110	1081	20	0.69	0.31	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_708_CONTIG_1	15	+	2178	12	incomplete-splice_match	USP8	ENST00000396444	5690	20	17	3495	3prime_fragment	FALSE	canonical	0	0	2124	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.678	0.322	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4950_CONTIG_1	17	-	1636	10	full-splice_match	PRPSAP1	ENST00000446526	3660	10	518	1506	multi-exon	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	A	coding	356	1068	16	1083	15	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1828_CONTIG_1	7	-	1059	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	122	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3470_CONTIG_1	2	+	1969	9	incomplete-splice_match	CPS1	ENST00000451903	4770	28	2725	76	internal_fragment	TRUE	canonical	0	0	824	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.61	0.39	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1181_CONTIG_1	5	-	2051	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	5	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_331_CONTIG_1	12	-	1204	14	full-splice_match	HPD	ENST00000289004	1419	14	0	215	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	389	1167	37	1203	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8045_CONTIG_1	4	+	2041	15	full-splice_match	ALB	ENST00000295897	2263	15	50	172	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	55	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3243_CONTIG_1	16	+	1101	3	full-splice_match	HP	ENST00000566821	3024	3	1900	23	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3696_CONTIG_1	10	+	2138	12	incomplete-splice_match	HABP2	ENST00000542051	2972	13	125	709	internal_fragment	FALSE	canonical	0	0	1449	2	NA	0	0	FALSE	NA	NA	0	B	coding	534	1602	10	1611	35	0.858	0.142	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2418_CONTIG_1	9	+	748	6	full-splice_match	ORM1	ENST00000259396	802	6	42	12	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2485_CONTIG_1	16	+	1390	7	full-splice_match	HP	ENST00000355906	1443	7	31	22	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4460_CONTIG_1	3	+	1505	7	full-splice_match	AHSG	ENST00000411641	1711	7	133	73	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	87	1187	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7745_CONTIG_1	17	-	1574	8	full-splice_match	VTN	ENST00000226218	2149	8	515	60	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3457_CONTIG_1	17	-	350	2	full-splice_match	LSMD1	ENST00000333775	999	2	588	61	multi-exon	FALSE	canonical	0	0	252	2	NA	0	0	FALSE	NA	NA	0	C	coding	69	207	144	350	15	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5358_CONTIG_1	3	-	331	3	incomplete-splice_match	RPN1	ENST00000497289	2137	10	669	1137	internal_fragment	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	B	coding	84	252	80	331	20	0.512	0.488	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2542_CONTIG_1	17	+	1855	13	full-splice_match	GPS1	ENST00000306823	1842	13	-14	1	multi-exon	TRUE	canonical	0	0	1438	2	NA	0	0	FALSE	NA	NA	0	A	coding	491	1473	38	1510	0	0.368	0.632	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5678_CONTIG_1	4	+	2043	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1890	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	1001	1864	45	0.41	0.59	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4025_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	327	8	multi-exon	FALSE	canonical	0	0	19	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	40	840	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_825_CONTIG_1	12	-	2480	10	novel_in_catalog	A2M	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	B	coding	328	984	198	1181	60	0.674	0.326	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4389_CONTIG_1	4	+	2028	15	full-splice_match	ALB	ENST00000295897	2263	15	50	185	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5301_CONTIG_1	19	-	1013	11	incomplete-splice_match	KRI1	ENST00000478863	2545	18	-39	1571	internal_fragment	FALSE	canonical	0	0	105	2	NA	0	0	FALSE	NA	NA	0	A	coding	334	1002	12	1013	40	0.352	0.648	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5375_CONTIG_1	4	+	1939	15	full-splice_match	ALB	ENST00000295897	2263	15	50	274	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5264_CONTIG_1	3	-	964	5	full-splice_match	TNFSF10	ENST00000241261	1953	5	77	912	multi-exon	FALSE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7440_CONTIG_1	19	-	1393	13	full-splice_match	STAP2	ENST00000594605	1426	13	16	17	multi-exon	FALSE	canonical	0	0	210	2	NA	1	0	FALSE	NA	NA	0	C	coding	403	1209	109	1317	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6453_CONTIG_1	4	+	1149	4	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	494	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6178_CONTIG_1	4	+	2018	15	full-splice_match	ALB	ENST00000295897	2263	15	50	195	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6866_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7746_CONTIG_1	14	+	1702	4	novel_in_catalog	PRPF39	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1026	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.236	0.764	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8051_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1041_CONTIG_1	3	+	2293	17	full-splice_match	TF	ENST00000402696	2968	17	437	238	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4564_CONTIG_1	5	-	1971	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	85	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.302	0.698	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2294_CONTIG_1	4	+	1538	13	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1414	2	NA	1	0	TRUE	NA	NA	0	C	coding	449	1347	42	1388	20	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1129_CONTIG_1	11	-	897	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	2	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4260_CONTIG_1	2	+	1363	4	full-splice_match	PEX13	ENST00000295030	4470	4	21	3086	multi-exon	FALSE	canonical	0	0	930	2	NA	0	0	FALSE	NA	NA	0	A	coding	403	1209	18	1226	45	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7254_CONTIG_1	17	+	2219	20	full-splice_match	ACADVL	ENST00000356839	2323	20	94	10	multi-exon	FALSE	canonical	0	0	1912	2	NA	0	0	FALSE	NA	NA	0	C	coding	655	1965	86	2050	5	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5691_CONTIG_1	15	+	918	4	full-splice_match	B2M	ENST00000558401	1715	4	36	761	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8311_CONTIG_1	17	-	588	3	incomplete-splice_match	VTN	ENST00000226218	2149	8	1552	9	5prime_fragment	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	129	387	115	501	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6857_CONTIG_1	19	+	1122	13	full-splice_match	TECR	ENST00000215567	1171	13	32	17	multi-exon	FALSE	canonical	0	0	904	2	NA	0	0	FALSE	NA	NA	0	A	coding	308	924	106	1029	10	0.206	0.794	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2978_CONTIG_1	9	+	1078	2	full-splice_match	NUP188	ENST00000464729	408	2	-111	-559	multi-exon	FALSE	canonical	0	0	396	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1671_CONTIG_1	10	+	634	8	incomplete-splice_match	SMC3	ENST00000361804	4114	29	33	3447	3prime_fragment	FALSE	canonical	0	0	522	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.232	0.768	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6332_CONTIG_1	14	-	785	4	full-splice_match	ERH	ENST00000557016	1116	4	337	-6	multi-exon	FALSE	canonical	0	0	60	2	NA	3	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.2	0.8	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_152_CONTIG_1	10	+	1203	9	full-splice_match	AKR1C1	ENST00000380872	6705	9	162	5340	multi-exon	FALSE	canonical	0	0	959	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	31	999	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5777_CONTIG_1	9	+	761	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-1	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6241_CONTIG_1	2	-	489	4	full-splice_match	FABP1	ENST00000295834	546	4	54	3	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	46	426	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1899_CONTIG_1	4	-	1872	9	full-splice_match	ADH4	ENST00000265512	1993	9	-10	131	multi-exon	FALSE	canonical	0	0	103	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5753_CONTIG_1	4	+	2018	15	full-splice_match	ALB	ENST00000295897	2263	15	48	197	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6641_CONTIG_1	16	-	343	3	novel_not_in_catalog	MT1G	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6968_CONTIG_1	1	+	1564	9	full-splice_match	EPHX1	ENST00000366837	1776	9	-1	213	multi-exon	FALSE	canonical	0	0	1363	2	NA	1	0	FALSE	NA	NA	0	C	coding	455	1365	198	1562	10	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4804_CONTIG_1	12	+	1913	13	full-splice_match	ALDH2	ENST00000261733	2018	13	43	62	multi-exon	FALSE	canonical	0	0	1539	2	NA	0	0	FALSE	NA	NA	0	C	coding	517	1551	19	1569	25	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2571_CONTIG_1	22	-	1030	5	full-splice_match	XBP1	ENST00000216037	1850	5	285	535	multi-exon	FALSE	canonical	0	0	15	2	NA	1	0	FALSE	NA	NA	0	A	coding	197	591	352	942	55	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1188_CONTIG_1	16	+	1224	5	full-splice_match	HP	ENST00000398131	1252	5	17	11	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7100_CONTIG_1	4	-	1548	10	full-splice_match	FGG	ENST00000404648	1760	10	193	19	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4449_CONTIG_1	9	-	815	6	full-splice_match	RPS6	ENST00000380394	1387	6	18	554	multi-exon	FALSE	canonical	0	0	47	2	NA	1	0	FALSE	NA	NA	0	C	coding	249	747	42	788	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7511_CONTIG_1	17	+	689	6	full-splice_match	RPL19	ENST00000225430	732	6	38	5	multi-exon	FALSE	canonical	0	0	491	2	NA	0	0	FALSE	NA	NA	0	C	coding	196	588	25	612	0	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7776_CONTIG_1	2	+	1888	16	full-splice_match	HADHB	ENST00000317799	2044	16	68	88	multi-exon	FALSE	canonical	0	0	1425	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	37	1458	55	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4013_CONTIG_1	14	-	1015	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	442	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1422_CONTIG_1	11	-	1556	10	full-splice_match	HPX	ENST00000265983	1652	10	72	24	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	30	1415	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_988_CONTIG_1	18	+	328	2	incomplete-splice_match	TTR	ENST00000237014	957	4	437	192	internal_fragment	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8140_CONTIG_1	14	-	777	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	195	478	internal_fragment	FALSE	canonical	0	0	485	2	NA	0	0	FALSE	NA	NA	0	C	coding	226	678	98	775	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_416_CONTIG_1	1	+	945	6	full-splice_match	CACYBP	ENST00000367679	2766	6	346	1475	multi-exon	FALSE	canonical	0	0	632	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.206	0.794	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8034_CONTIG_1	12	-	1663	2	full-splice_match	APOF	ENST00000541105	1682	2	24	-5	multi-exon	FALSE	canonical	0	0	70	2	NA	0	0	FALSE	NA	NA	0	C	coding	326	978	55	1032	75	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_602_CONTIG_1	10	+	1669	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	-2	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6325_CONTIG_1	15	+	913	4	full-splice_match	B2M	ENST00000558401	1715	4	36	766	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1652_CONTIG_1	4	+	1132	9	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	796	3prime_fragment	FALSE	canonical	0	0	1099	2	NA	0	0	FALSE	NA	NA	0	C	coding	363	1089	42	1130	5	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3459_CONTIG_1	22	-	1284	10	full-splice_match	RPL3	ENST00000216146	1442	10	152	6	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	23	1231	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4287_CONTIG_1	10	-	909	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	168	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1829_CONTIG_1	5	+	1911	3	full-splice_match	C5orf27	ENST00000357880	804	3	0	-1107	multi-exon	FALSE	canonical	0	0	587	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5215_CONTIG_1	4	+	1383	11	full-splice_match	ALB	ENST00000511370	1519	11	91	45	multi-exon	FALSE	canonical	0	0	1295	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	406	1269	50	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2688_CONTIG_1	19	+	913	10	novel_not_in_catalog	PRKCSH	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	876	2	NA	0	0	TRUE	NA	NA	0	B	coding	262	786	126	911	15	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_321_CONTIG_1	7	+	1010	7	full-splice_match	TMEM176A	ENST00000004103	1261	7	249	2	multi-exon	FALSE	canonical	0	0	718	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	53	757	10	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5893_CONTIG_1	21	-	1421	13	incomplete-splice_match	CBS	ENST00000544202	1703	15	233	49	5prime_fragment	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	C	coding	383	1149	110	1258	15	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3730_CONTIG_1	4	+	1949	15	full-splice_match	ALB	ENST00000295897	2263	15	50	264	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7052_CONTIG_1	6	-	1675	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	72	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6492_CONTIG_1	12	+	995	4	full-splice_match	PEBP1	ENST00000261313	1697	4	253	449	multi-exon	FALSE	canonical	0	0	445	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	100	660	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1673_CONTIG_1	10	+	1598	10	incomplete-splice_match	ITIH2	ENST00000379587	2848	20	1421	-171	internal_fragment	FALSE	canonical	0	0	1274	2	NA	0	0	FALSE	NA	NA	0	B	coding	385	1155	265	1419	35	0.666	0.334	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2211_CONTIG_1	12	-	1568	8	full-splice_match	SDS	ENST00000257549	1606	8	-1	39	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	128	1108	45	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1151_CONTIG_1	10	-	917	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	160	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5534_CONTIG_1	2	-	765	7	novel_not_in_catalog	HSPD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	1	0	TRUE	NA	NA	0	B	coding	189	567	92	658	55	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1708_CONTIG_1	4	-	1548	10	full-splice_match	FGG	ENST00000404648	1760	10	193	19	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2945_CONTIG_1	4	+	754	6	incomplete-splice_match	ALB	ENST00000415165	1483	11	455	274	internal_fragment	FALSE	canonical	0	0	662	2	NA	0	0	FALSE	NA	NA	0	C	coding	229	687	67	753	30	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5010_CONTIG_1	9	+	678	6	full-splice_match	ORM1	ENST00000259396	802	6	42	82	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5990_CONTIG_1	4	+	1058	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	870	3prime_fragment	FALSE	canonical	0	0	884	2	NA	1	0	FALSE	NA	NA	0	C	coding	339	1017	42	1058	35	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1953_CONTIG_1	4	+	1631	8	full-splice_match	FGB	ENST00000302068	1975	8	61	283	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3427_CONTIG_1	15	+	942	4	full-splice_match	B2M	ENST00000558401	1715	4	40	733	multi-exon	FALSE	canonical	0	0	404	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_790_CONTIG_1	22	-	1256	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	38	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	27	1235	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1749_CONTIG_1	9	-	827	6	full-splice_match	RPS6	ENST00000380394	1387	6	18	542	multi-exon	FALSE	canonical	0	0	47	2	NA	1	0	FALSE	NA	NA	0	C	coding	249	747	42	788	15	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_619_CONTIG_1	5	+	1048	8	incomplete-splice_match	IQGAP2	ENST00000379730	5598	35	-48	4598	3prime_fragment	FALSE	canonical	0	0	910	2	NA	0	0	FALSE	NA	NA	0	B	coding	259	777	271	1047	60	0.682	0.318	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5602_CONTIG_1	16	+	1175	5	full-splice_match	HP	ENST00000398131	1252	5	17	60	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5029_CONTIG_1	21	+	1924	6	incomplete-splice_match	ETS2	ENST00000360938	3766	10	669	1173	internal_fragment	FALSE	canonical	0	0	815	2	NA	1	0	FALSE	NA	NA	0	B	coding	336	1008	21	1028	30	0.554	0.446	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1958_CONTIG_1	4	+	2021	15	full-splice_match	ALB	ENST00000295897	2263	15	50	192	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3996_CONTIG_1	17	-	457	2	novel_not_in_catalog	P2RX5	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	83	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1827_CONTIG_1	16	+	1200	4	full-splice_match	HPR	ENST00000228226	1158	4	116	-158	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	356	1039	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7071_CONTIG_1	16	+	1042	3	full-splice_match	HP	ENST00000566821	3024	3	1968	14	multi-exon	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	206	889	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1818_CONTIG_1	6	-	932	3	novel_in_catalog	C6orf62	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.448	0.552	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3448_CONTIG_1	10	+	765	2	incomplete-splice_match	HABP2	ENST00000542051	2972	13	1500	707	internal_fragment	FALSE	canonical	0	0	74	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.462	0.538	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3033_CONTIG_1	5	+	1004	2	incomplete-splice_match	BHMT2	ENST00000255192	2050	8	1046	0	internal_fragment	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6659_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3562_CONTIG_1	4	-	598	3	incomplete-splice_match	ADH1C	ENST00000515683	1740	9	714	428	internal_fragment	FALSE	canonical	0	0	205	2	NA	0	0	FALSE	NA	NA	0	C	coding	111	333	266	598	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8187_CONTIG_1	4	-	2116	5	full-splice_match	FGA	ENST00000403106	2248	5	105	27	multi-exon	FALSE	canonical	0	0	28	2	NA	0	0	FALSE	NA	NA	0	C	coding	575	1725	182	1906	25	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_302_CONTIG_1	3	+	1868	2	novel_in_catalog	PLCXD2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	712	2	NA	0	0	FALSE	NA	NA	0	A	coding	202	606	586	1191	55	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2540_CONTIG_1	3	-	1087	12	incomplete-splice_match	ITIH4	ENST00000266041	3336	24	1858	391	5prime_fragment	FALSE	canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	B	coding	273	819	211	1029	5	0.768	0.232	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7775_CONTIG_1	5	+	2027	7	full-splice_match	MAT2B	ENST00000321757	2103	7	66	10	multi-exon	FALSE	canonical	0	0	907	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4532_CONTIG_1	22	+	1101	3	incomplete-splice_match	SERPIND1	ENST00000215727	2437	5	245	1091	3prime_fragment	FALSE	canonical	0	0	927	2	NA	1	0	FALSE	NA	NA	0	C	coding	354	1062	39	1100	20	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_926_CONTIG_1	4	+	1858	8	full-splice_match	FGB	ENST00000302068	1975	8	56	61	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6578_CONTIG_1	5	+	1923	7	full-splice_match	MAT2B	ENST00000321757	2103	7	58	122	multi-exon	FALSE	canonical	0	0	915	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1549_CONTIG_1	17	-	635	3	novel_in_catalog	VTN	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	coding	176	528	106	633	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4922_CONTIG_1	16	-	1510	8	incomplete-splice_match	TAT	ENST00000355962	3983	12	566	1907	5prime_fragment	FALSE	canonical	0	0	135	2	NA	1	0	FALSE	NA	NA	0	A	coding	276	828	103	930	35	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8637_CONTIG_1	4	+	1801	8	full-splice_match	FGB	ENST00000302068	1975	8	57	117	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1407_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	50	168	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7392_CONTIG_1	19	-	1756	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	8	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4842_CONTIG_1	19	+	867	4	full-splice_match	FTL	ENST00000331825	878	4	8	3	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_914_CONTIG_1	9	+	752	6	full-splice_match	ORM1	ENST00000259396	802	6	42	8	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7759_CONTIG_1	8	+	339	5	incomplete-splice_match	SORBS3	ENST00000518912	689	6	130	220	3prime_fragment	FALSE	canonical	0	0	317	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1168_CONTIG_1	19	+	839	4	full-splice_match	FTL	ENST00000331825	878	4	8	31	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	50	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1824_CONTIG_1	4	+	1572	8	full-splice_match	FGB	ENST00000302068	1975	8	61	342	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3206_CONTIG_1	12	-	857	7	full-splice_match	RPL6	ENST00000202773	947	7	36	54	multi-exon	FALSE	canonical	0	0	19	2	NA	1	0	FALSE	NA	NA	0	C	coding	279	837	20	856	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4675_CONTIG_1	5	-	1605	3	full-splice_match	SEPP1	ENST00000514403	653	3	268	-1220	multi-exon	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8430_CONTIG_1	9	-	1591	9	full-splice_match	ALDOB	ENST00000374855	2451	9	56	804	multi-exon	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	70	1161	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_688_CONTIG_1	14	-	1006	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	456	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	47	1006	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4616_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	441	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	48	1022	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7942_CONTIG_1	10	-	1917	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	0	6	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2987_CONTIG_1	2	+	1315	15	full-splice_match	CBWD2	ENST00000259199	1812	15	90	407	multi-exon	FALSE	canonical	0	0	1169	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2063_CONTIG_1	11	+	1607	11	full-splice_match	EI24	ENST00000530985	2447	11	287	553	multi-exon	TRUE	canonical	0	0	1000	2	NA	1	0	FALSE	NA	NA	0	C	coding	299	897	142	1038	25	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8331_CONTIG_1	5	+	1223	2	novel_not_in_catalog	ISOC1	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	130	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_733_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	50	162	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5793_CONTIG_1	19	+	743	7	full-splice_match	GPX4	ENST00000354171	908	7	133	32	multi-exon	FALSE	canonical	0	0	535	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5641_CONTIG_1	1	+	352	2	novel_in_catalog	FMO3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	74	2	NA	0	0	FALSE	NA	NA	0	B	coding	106	318	34	351	15	0.586	0.414	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3393_CONTIG_1	19	+	607	3	full-splice_match	APOE	ENST00000425718	923	3	255	61	multi-exon	FALSE	canonical	0	0	246	2	NA	0	0	FALSE	NA	NA	0	C	coding	199	597	11	607	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2338_CONTIG_1	5	-	1885	10	novel_in_catalog	TTC37	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	77	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4246_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_959_CONTIG_1	14	-	995	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	468	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	316	948	48	995	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_31_CONTIG_1	1	-	1232	7	incomplete-splice_match	CAPZB	ENST00000375144	1568	8	91	245	5prime_fragment	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	B	coding	185	555	169	723	10	0.67	0.33	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3952_CONTIG_1	4	+	1954	15	full-splice_match	ALB	ENST00000295897	2263	15	48	261	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5687_CONTIG_1	7	-	1253	7	incomplete-splice_match	CYP3A4	ENST00000336411	2153	13	818	82	5prime_fragment	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4454_CONTIG_1	4	-	1550	10	full-splice_match	FGG	ENST00000404648	1760	10	193	17	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_367_CONTIG_1	17	+	514	3	incomplete-splice_match	MPDU1	ENST00000574558	900	5	188	198	internal_fragment	FALSE	canonical	0	0	199	2	NA	1	0	FALSE	NA	NA	0	C	coding	35	105	218	322	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2379_CONTIG_1	4	+	1647	12	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	281	3prime_fragment	FALSE	canonical	0	0	1469	2	NA	0	0	FALSE	NA	NA	0	C	coding	535	1605	42	1646	30	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_727_CONTIG_1	4	+	1464	10	novel_in_catalog	ALB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	485	1455	9	1463	20	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5448_CONTIG_1	9	+	803	7	full-splice_match	PTGDS	ENST00000371625	807	7	1	3	multi-exon	FALSE	canonical	0	0	646	2	NA	0	0	FALSE	NA	NA	0	A	coding	190	570	74	643	15	0.322	0.678	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2493_CONTIG_1	13	-	527	2	incomplete-splice_match	NUFIP1	ENST00000379161	3492	10	14	2951	internal_fragment	FALSE	canonical	0	0	445	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3050_CONTIG_1	X	+	903	7	full-splice_match	PRDX4	ENST00000379341	1005	7	72	30	multi-exon	FALSE	canonical	0	0	818	2	NA	1	0	FALSE	NA	NA	0	C	coding	271	813	54	866	30	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3746_CONTIG_1	11	-	714	3	full-splice_match	APOA1	ENST00000375323	1088	3	207	167	multi-exon	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	C	coding	231	693	21	713	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_12_CONTIG_1	X	+	937	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	128	multi-exon	FALSE	canonical	0	0	524	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	180	692	50	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1665_CONTIG_1	4	-	1554	10	full-splice_match	FGG	ENST00000404648	1760	10	193	13	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4298_CONTIG_1	1	-	455	4	full-splice_match	APOA2	ENST00000367990	474	4	3	16	multi-exon	FALSE	canonical	0	0	31	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	56	355	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7023_CONTIG_1	3	+	1332	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	240	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	25	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6131_CONTIG_1	4	+	455	3	genic_intron	novelGene_277	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	414	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_180_CONTIG_1	6	+	2180	6	incomplete-splice_match	HLA-E	ENST00000376630	2601	8	404	17	internal_fragment	FALSE	canonical	0	0	740	2	NA	0	0	FALSE	NA	NA	0	C	coding	240	720	16	735	20	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5922_CONTIG_1	7	+	900	4	full-splice_match	POR	ENST00000493973	1028	4	69	59	multi-exon	FALSE	canonical	0	0	440	2	NA	0	0	FALSE	NA	NA	0	C	coding	167	501	82	582	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5785_CONTIG_1	10	-	1463	6	full-splice_match	BNIP3	ENST00000368636	1160	6	-11	-292	multi-exon	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_646_CONTIG_1	1	-	743	7	full-splice_match	HYI	ENST00000486909	905	7	40	122	multi-exon	FALSE	canonical	0	0	214	2	NA	1	0	FALSE	NA	NA	0	A	coding	242	726	16	741	10	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1849_CONTIG_1	11	+	530	4	full-splice_match	APOC3	ENST00000227667	550	4	15	5	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3989_CONTIG_1	2	-	1420	3	antisense	novelGene_PPP1R7_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	70	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7881_CONTIG_1	4	+	405	2	full-splice_match	MTHFD2L	ENST00000461101	2363	2	-13	1971	multi-exon	FALSE	canonical	0	0	177	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7616_CONTIG_1	16	+	982	7	full-splice_match	PSMD7	ENST00000219313	1670	7	46	642	multi-exon	FALSE	canonical	0	0	624	2	NA	0	0	FALSE	NA	NA	0	A	coding	296	888	95	982	60	0.234	0.766	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3531_CONTIG_1	1	-	1485	9	incomplete-splice_match	C8B	ENST00000371237	2037	12	495	57	5prime_fragment	FALSE	canonical	0	0	105	2	NA	1	0	FALSE	NA	NA	0	C	coding	426	1278	68	1345	35	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5567_CONTIG_1	4	+	1808	8	full-splice_match	FGB	ENST00000302068	1975	8	55	112	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3449_CONTIG_1	16	+	1229	5	full-splice_match	HP	ENST00000565574	1187	5	-3	-39	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6738_CONTIG_1	14	-	872	4	novel_not_in_catalog	SERPINA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	40	2	NA	1	0	TRUE	NA	NA	0	C	coding	184	552	45	596	10	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3971_CONTIG_1	15	+	1712	2	full-splice_match	NGRN	ENST00000331497	2784	2	31	1041	multi-exon	FALSE	canonical	0	0	709	2	NA	1	0	FALSE	NA	NA	0	A	coding	219	657	651	1307	50	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1948_CONTIG_1	10	-	920	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	157	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4788_CONTIG_1	4	-	2077	6	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	111	2	NA	1	0	TRUE	NA	NA	0	C	coding	605	1815	58	1872	40	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3490_CONTIG_1	14	-	710	6	full-splice_match	CHMP4A	ENST00000609024	735	6	20	5	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	A	coding	222	666	30	695	15	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2490_CONTIG_1	18	-	1583	10	full-splice_match	ACAA2	ENST00000285093	2018	10	427	8	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	50	1240	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6107_CONTIG_1	16	+	649	5	full-splice_match	HP	ENST00000398131	1252	5	17	586	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	207	621	28	648	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2553_CONTIG_1	8	-	802	7	incomplete-splice_match	DGAT1	ENST00000332324	2004	17	1192	10	5prime_fragment	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	A	coding	181	543	4	546	15	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5381_CONTIG_1	1	-	765	4	incomplete-splice_match	SERPINC1	ENST00000367698	1594	7	829	0	5prime_fragment	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	C	coding	182	546	137	682	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5870_CONTIG_1	4	-	1542	10	full-splice_match	FGG	ENST00000404648	1760	10	196	22	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_177_CONTIG_1	19	-	1120	12	incomplete-splice_match	C3	ENST00000245907	5263	41	3549	594	internal_fragment	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	B	coding	345	1035	85	1119	30	0.694	0.306	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3723_CONTIG_1	9	-	628	7	full-splice_match	RPL12	ENST00000361436	633	7	0	5	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	165	495	89	583	5	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3690_CONTIG_1	4	+	1376	8	novel_not_in_catalog	MTTP	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	861	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7612_CONTIG_1	1	-	1570	10	full-splice_match	CHI3L1	ENST00000255409	1792	10	47	175	multi-exon	FALSE	canonical	0	0	104	2	NA	1	0	FALSE	NA	NA	0	A	coding	383	1149	80	1228	30	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_871_CONTIG_1	9	-	1260	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	2	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6270_CONTIG_1	4	-	1604	6	full-splice_match	UGT2B4	ENST00000305107	2103	6	3	496	multi-exon	FALSE	canonical	0	0	765	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8032_CONTIG_1	19	+	804	4	full-splice_match	FTL	ENST00000331825	878	4	8	66	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8412_CONTIG_1	10	-	915	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	162	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5462_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	48	204	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7784_CONTIG_1	7	-	2197	4	novel_in_catalog	KDM7A	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	711	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7535_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6171_CONTIG_1	15	-	557	5	genic_intron	novelGene_577	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	289	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5087_CONTIG_1	12	-	1056	3	incomplete-splice_match	EIF2B1	ENST00000424014	2477	9	795	626	5prime_fragment	FALSE	canonical	0	0	41	2	NA	0	0	FALSE	NA	NA	0	B	coding	91	273	57	329	15	0.52	0.48	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_552_CONTIG_1	19	-	905	5	full-splice_match	BST2	ENST00000252593	1019	5	56	58	multi-exon	FALSE	canonical	0	0	302	2	NA	1	0	FALSE	NA	NA	0	A	coding	180	540	18	557	5	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_586_CONTIG_1	11	+	1857	8	novel_in_catalog	SLC22A10	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1088	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.264	0.736	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6458_CONTIG_1	19	+	1163	4	full-splice_match	APOE	ENST00000252486	1208	4	44	1	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7996_CONTIG_1	17	+	1463	12	full-splice_match	ENO3	ENST00000323997	1521	12	24	34	multi-exon	FALSE	canonical	0	0	1343	2	NA	0	0	FALSE	NA	NA	0	A	coding	434	1302	109	1410	35	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5118_CONTIG_1	9	+	643	5	incomplete-splice_match	ASS1	ENST00000372386	667	6	72	-48	internal_fragment	FALSE	canonical	0	0	392	2	NA	0	0	FALSE	NA	NA	0	C	coding	137	411	25	435	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1886_CONTIG_1	3	+	1528	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	44	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	25	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6637_CONTIG_1	1	+	1513	7	incomplete-splice_match	SCP2	ENST00000407246	2239	15	999	-273	internal_fragment	FALSE	canonical	0	0	588	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5864_CONTIG_1	6	+	711	6	full-splice_match	RPL10A	ENST00000322203	716	6	-1	6	multi-exon	FALSE	canonical	0	0	511	2	NA	0	0	FALSE	NA	NA	0	C	coding	217	651	29	679	5	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4567_CONTIG_1	19	+	823	4	full-splice_match	FTL	ENST00000331825	878	4	8	47	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3447_CONTIG_1	1	+	1437	3	full-splice_match	DNALI1	ENST00000467277	621	3	-915	99	multi-exon	FALSE	canonical	0	0	1415	2	NA	0	0	FALSE	NA	NA	0	A	coding	100	300	448	747	45	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4229_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	51	162	multi-exon	FALSE	canonical	0	0	1891	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6613_CONTIG_1	10	+	1598	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	69	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3478_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4336_CONTIG_1	4	+	1965	15	full-splice_match	ALB	ENST00000295897	2263	15	50	248	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8463_CONTIG_1	1	+	898	2	full-splice_match	APCS	ENST00000255040	926	2	1	27	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1771_CONTIG_1	4	-	1897	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	658	-888	5prime_fragment	FALSE	canonical	0	0	101	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4918_CONTIG_1	2	-	526	2	antisense	novelGene_BIRC6_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	332	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5976_CONTIG_1	9	-	1554	5	incomplete-splice_match	PLIN2	ENST00000276914	1972	8	406	12	5prime_fragment	FALSE	canonical	0	0	83	2	NA	2	0	FALSE	NA	NA	0	C	coding	300	900	186	1085	30	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7538_CONTIG_1	15	-	1980	8	full-splice_match	GATM	ENST00000558362	3911	8	1851	80	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7518_CONTIG_1	6	+	1257	2	incomplete-splice_match	PLG	ENST00000461414	661	4	122	-718	internal_fragment	FALSE	canonical	0	0	123	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2797_CONTIG_1	4	-	1485	10	full-splice_match	FGG	ENST00000404648	1760	10	196	79	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	40	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4920_CONTIG_1	19	-	1410	14	incomplete-splice_match	C3	ENST00000245907	5263	41	3717	136	5prime_fragment	FALSE	canonical	0	0	22	2	NA	0	0	FALSE	NA	NA	0	B	coding	390	1170	196	1365	10	0.66	0.34	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6989_CONTIG_1	4	+	2038	15	full-splice_match	ALB	ENST00000295897	2263	15	48	177	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_622_CONTIG_1	1	+	1467	6	novel_in_catalog	CFH	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	832	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	75	0.554	0.446	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6133_CONTIG_1	11	+	1537	12	full-splice_match	ACAT1	ENST00000265838	1761	12	51	173	multi-exon	FALSE	canonical	0	0	1203	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5786_CONTIG_1	5	-	1007	2	incomplete-splice_match	YIPF5	ENST00000513112	2135	5	685	443	5prime_fragment	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4907_CONTIG_1	1	+	1257	6	novel_in_catalog	SLC27A3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	941	2	NA	0	0	FALSE	NA	NA	0	A	coding	321	963	153	1115	20	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8651_CONTIG_1	16	-	289	3	novel_not_in_catalog	MT1G	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8198_CONTIG_1	5	-	1969	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	87	multi-exon	FALSE	canonical	0	0	57	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_873_CONTIG_1	10	+	1641	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	26	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2066_CONTIG_1	9	-	1304	9	full-splice_match	ALDOB	ENST00000374855	2451	9	53	1094	multi-exon	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	73	1164	60	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8682_CONTIG_1	4	+	2009	15	full-splice_match	ALB	ENST00000295897	2263	15	48	206	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1453_CONTIG_1	14	+	965	4	incomplete-splice_match	SERPINA3	ENST00000393080	1581	5	611	5	internal_fragment	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	220	660	67	726	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1716_CONTIG_1	11	+	534	4	full-splice_match	APOC3	ENST00000227667	550	4	17	-1	multi-exon	FALSE	canonical	0	0	224	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	46	342	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4299_CONTIG_1	4	+	1150	9	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	778	3prime_fragment	FALSE	canonical	0	0	1099	2	NA	0	0	FALSE	NA	NA	0	C	coding	369	1107	42	1148	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2695_CONTIG_1	3	+	1696	6	full-splice_match	UMPS	ENST00000232607	2658	6	57	905	multi-exon	FALSE	canonical	0	0	1322	2	NA	0	0	FALSE	NA	NA	0	A	coding	480	1440	50	1489	10	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_13_CONTIG_1	16	+	1408	7	full-splice_match	HP	ENST00000355906	1443	7	31	4	multi-exon	FALSE	canonical	0	0	469	2	NA	1	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6603_CONTIG_1	10	-	396	4	incomplete-splice_match	NSMCE4A	ENST00000369017	1224	7	590	238	internal_fragment	FALSE	canonical	0	0	92	2	NA	0	0	FALSE	NA	NA	0	A	coding	69	207	181	387	20	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_792_CONTIG_1	15	+	1832	7	full-splice_match	CYP1A2	ENST00000343932	2728	7	6	890	multi-exon	FALSE	canonical	0	0	1310	2	NA	0	0	FALSE	NA	NA	0	C	coding	516	1548	58	1605	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7163_CONTIG_1	12	+	888	4	full-splice_match	MGST1	ENST00000396210	914	4	30	-4	multi-exon	FALSE	canonical	0	0	275	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1212_CONTIG_1	4	+	417	4	incomplete-splice_match	ALB	ENST00000415165	1483	11	996	70	internal_fragment	FALSE	canonical	0	0	322	2	NA	0	0	FALSE	NA	NA	0	C	coding	38	114	183	296	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8674_CONTIG_1	5	-	2036	5	full-splice_match	SEPP1	ENST00000514985	2243	5	186	21	multi-exon	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.28	0.72	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4169_CONTIG_1	17	-	958	4	full-splice_match	H3F3B	ENST00000254810	2705	4	2	1745	multi-exon	FALSE	canonical	0	0	121	2	NA	0	0	FALSE	NA	NA	0	C	coding	136	408	132	539	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_877_CONTIG_1	15	+	898	4	full-splice_match	B2M	ENST00000558401	1715	4	40	777	multi-exon	FALSE	canonical	0	0	404	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_710_CONTIG_1	11	+	533	4	full-splice_match	APOC3	ENST00000227667	550	4	13	4	multi-exon	FALSE	canonical	0	0	228	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	50	346	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6905_CONTIG_1	11	-	523	6	full-splice_match	RPS13	ENST00000525634	646	6	118	5	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	C	coding	151	453	29	481	35	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1764_CONTIG_1	5	+	832	4	full-splice_match	ATP6V0E1	ENST00000519374	1433	4	42	559	multi-exon	FALSE	canonical	0	0	344	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1450_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_208_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2965_CONTIG_1	10	+	1620	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	47	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7559_CONTIG_1	14	-	1010	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	453	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7121_CONTIG_1	4	+	1727	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1617	2	NA	0	0	TRUE	NA	NA	0	C	coding	299	897	40	936	10	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3310_CONTIG_1	3	+	1087	4	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	486	2	NA	0	0	TRUE	NA	NA	0	C	coding	207	621	87	707	25	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3920_CONTIG_1	1	-	1516	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	82	-4	multi-exon	TRUE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	38	1429	30	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1016_CONTIG_1	X	+	1010	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	55	multi-exon	FALSE	canonical	0	0	524	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	180	692	15	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7228_CONTIG_1	7	+	1556	9	novel_in_catalog	CALD1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1120	2	NA	0	0	FALSE	NA	NA	0	A	coding	317	951	269	1219	5	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1887_CONTIG_1	1	+	916	2	full-splice_match	APCS	ENST00000255040	926	2	1	9	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	C	coding	223	669	97	765	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2283_CONTIG_1	19	+	814	4	full-splice_match	FTL	ENST00000331825	878	4	8	56	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6742_CONTIG_1	11	+	1500	12	full-splice_match	ACAT1	ENST00000265838	1761	12	77	184	multi-exon	FALSE	canonical	0	0	1177	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_666_CONTIG_1	4	+	889	3	full-splice_match	SMIM20	ENST00000506197	935	3	44	2	multi-exon	FALSE	canonical	0	0	232	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1987_CONTIG_1	4	-	1554	10	full-splice_match	FGG	ENST00000404648	1760	10	196	10	multi-exon	FALSE	canonical	0	0	122	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4640_CONTIG_1	9	-	1246	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	16	multi-exon	FALSE	canonical	0	0	208	2	NA	1	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	30	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6939_CONTIG_1	3	-	1468	10	full-splice_match	PDHB	ENST00000302746	1527	10	34	25	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	A	coding	359	1077	10	1086	50	0.232	0.768	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7007_CONTIG_1	19	+	866	4	full-splice_match	FTL	ENST00000331825	878	4	8	4	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4525_CONTIG_1	16	-	815	3	full-splice_match	VKORC1	ENST00000394975	1012	3	185	12	multi-exon	FALSE	canonical	0	0	216	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	44	532	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5059_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_952_CONTIG_1	11	+	514	4	full-splice_match	SAA1	ENST00000356524	615	4	90	11	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_713_CONTIG_1	5	+	1298	2	genic_intron	novelGene_405	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	137	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7894_CONTIG_1	6	-	1157	6	full-splice_match	HLA-DRB1	ENST00000360004	1229	6	70	2	multi-exon	FALSE	canonical	0	0	136	2	NA	0	0	FALSE	NA	NA	0	C	coding	266	798	37	834	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2341_CONTIG_1	19	-	1763	17	novel_not_in_catalog	C3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	17	2	NA	1	0	FALSE	NA	NA	0	B	coding	522	1566	172	1737	40	0.54	0.46	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6231_CONTIG_1	7	-	1178	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	3	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	35	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8589_CONTIG_1	12	-	1480	5	full-splice_match	RND1	ENST00000309739	1681	5	28	173	multi-exon	FALSE	canonical	0	0	223	2	NA	0	0	FALSE	NA	NA	0	C	coding	232	696	104	799	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3429_CONTIG_1	4	+	1480	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	525	258	internal_fragment	FALSE	canonical	0	0	1417	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	3	1391	30	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_466_CONTIG_1	4	-	2030	5	full-splice_match	FGA	ENST00000403106	2248	5	24	194	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	56	1987	15	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3487_CONTIG_1	4	+	2022	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	40	0.944	0.056	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6490_CONTIG_1	4	-	1856	9	novel_in_catalog	FGG	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	128	2	NA	1	0	FALSE	NA	NA	0	C	coding	148	444	1221	1664	30	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6587_CONTIG_1	15	-	1096	2	full-splice_match	RAD51-AS1	ENST00000499988	1151	2	17	38	multi-exon	FALSE	canonical	0	0	79	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3008_CONTIG_1	2	-	2151	10	novel_not_in_catalog	IDH1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	123	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1578_CONTIG_1	14	+	1666	9	novel_in_catalog	PCK2	novel	NA	NA	NA	NA	no_combination_of_known_junctions	TRUE	canonical	0	0	1442	2	NA	0	0	FALSE	NA	NA	0	C	coding	465	1395	71	1465	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2839_CONTIG_1	11	-	930	5	incomplete-splice_match	HPX	ENST00000265983	1652	10	671	51	5prime_fragment	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	C	coding	234	702	115	816	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5663_CONTIG_1	4	+	1721	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1679	2	NA	1	0	TRUE	NA	NA	0	C	coding	538	1614	40	1653	10	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1718_CONTIG_1	12	+	639	6	incomplete-splice_match	ALDH2	ENST00000416293	1572	12	582	351	internal_fragment	FALSE	canonical	0	0	621	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	256	639	35	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2584_CONTIG_1	20	+	1675	15	novel_not_in_catalog	CTSA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1310	2	NA	0	0	TRUE	NA	NA	0	B	coding	449	1347	46	1392	25	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2326_CONTIG_1	10	-	1270	11	full-splice_match	PPA1	ENST00000373232	1295	11	0	25	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7304_CONTIG_1	4	+	1980	15	full-splice_match	ALB	ENST00000295897	2263	15	48	235	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	50	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1631_CONTIG_1	4	+	1850	13	novel_in_catalog	ALB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1717	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	195	1691	50	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5432_CONTIG_1	14	-	1367	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	37	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5929_CONTIG_1	11	-	455	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	443	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	139	417	38	454	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3006_CONTIG_1	1	+	2095	10	novel_in_catalog	ADC	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1668	2	NA	0	0	FALSE	NA	NA	0	A	coding	460	1380	425	1804	20	0.368	0.632	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5847_CONTIG_1	7	-	1398	5	full-splice_match	NDUFA5	ENST00000355749	1901	5	451	52	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5030_CONTIG_1	6	-	1659	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	88	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1243_CONTIG_1	10	+	1549	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	118	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2832_CONTIG_1	X	+	1564	2	full-splice_match	GJB1	ENST00000374022	1904	2	-5	345	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	101	949	45	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5999_CONTIG_1	17	+	1711	4	novel_in_catalog	AATF	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	857	2	NA	1	0	FALSE	NA	NA	0	B	coding	375	1125	164	1288	40	0.498	0.502	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_326_CONTIG_1	4	+	1926	15	full-splice_match	ALB	ENST00000295897	2263	15	50	287	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4294_CONTIG_1	3	+	386	4	incomplete-splice_match	SEC62	ENST00000481435	627	6	-19	260	3prime_fragment	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	65	0.408	0.592	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4358_CONTIG_1	9	-	1342	8	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	191	918	5prime_fragment	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	52	1026	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3640_CONTIG_1	8	-	902	4	novel_not_in_catalog	ENPP2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	421	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4534_CONTIG_1	9	+	761	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-1	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4126_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	451	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	47	1009	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4685_CONTIG_1	4	+	1535	8	full-splice_match	FGB	ENST00000302068	1975	8	57	383	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7528_CONTIG_1	3	+	1588	8	novel_not_in_catalog	HRG	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1165	2	NA	0	0	TRUE	NA	NA	0	C	coding	500	1500	29	1528	45	0.946	0.054	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4715_CONTIG_1	11	+	1552	13	novel_not_in_catalog	ACAT1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	1302	2	NA	0	0	FALSE	NA	NA	0	C	coding	337	1011	410	1420	65	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7223_CONTIG_1	16	+	396	3	full-splice_match	MT2A	ENST00000245185	786	3	385	5	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2354_CONTIG_1	19	+	1783	11	novel_not_in_catalog	LSM14A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1744	2	NA	1	0	TRUE	NA	NA	0	A	coding	404	1212	119	1330	25	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_648_CONTIG_1	4	+	1576	8	full-splice_match	FGB	ENST00000302068	1975	8	57	342	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_279_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	50	167	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8483_CONTIG_1	5	-	2007	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	49	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.356	0.644	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7620_CONTIG_1	10	+	2085	16	incomplete-splice_match	CCAR1	ENST00000265872	4683	25	21	2577	3prime_fragment	FALSE	canonical	0	0	2018	2	NA	0	0	FALSE	NA	NA	0	B	coding	106	318	695	1012	40	0.742	0.258	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8263_CONTIG_1	17	-	1603	8	full-splice_match	VTN	ENST00000226218	2149	8	516	30	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	104	1537	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1522_CONTIG_1	6	-	1756	9	full-splice_match	TPMT	ENST00000309983	3181	9	-3	1428	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4462_CONTIG_1	2	+	2293	6	full-splice_match	C2orf15	ENST00000512183	2569	6	71	205	multi-exon	FALSE	canonical	0	0	444	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2246_CONTIG_1	9	-	1563	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	839	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	60	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6474_CONTIG_1	16	+	1103	3	full-splice_match	HP	ENST00000566821	3024	3	1911	10	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1574_CONTIG_1	4	+	588	4	incomplete-splice_match	FGB	ENST00000502545	1320	7	-26	758	3prime_fragment	FALSE	canonical	0	0	497	2	NA	0	0	FALSE	NA	NA	0	C	coding	193	579	8	586	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2774_CONTIG_1	4	-	1478	10	full-splice_match	FGG	ENST00000404648	1760	10	196	86	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	40	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7785_CONTIG_1	16	+	376	3	full-splice_match	MT1E	ENST00000306061	704	3	306	22	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4600_CONTIG_1	17	-	1095	8	full-splice_match	APOH	ENST00000205948	1176	8	21	60	multi-exon	FALSE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	C	coding	345	1035	18	1052	30	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5575_CONTIG_1	6	+	474	6	full-splice_match	RPS12	ENST00000230050	631	6	128	29	multi-exon	FALSE	canonical	0	0	418	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	83	472	55	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6884_CONTIG_1	9	+	320	3	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	293	2	NA	0	0	FALSE	NA	NA	0	B	coding	94	282	37	318	20	0.524	0.476	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3521_CONTIG_1	4	-	1661	13	full-splice_match	GC	ENST00000273951	1972	13	283	28	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	62	1483	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4620_CONTIG_1	20	+	1098	4	full-splice_match	PKIG	ENST00000372886	1180	4	54	28	multi-exon	FALSE	canonical	0	0	373	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5923_CONTIG_1	16	+	1313	5	full-splice_match	HSD17B2	ENST00000199936	1455	5	140	2	multi-exon	FALSE	canonical	0	0	855	2	NA	2	0	FALSE	NA	NA	0	C	coding	387	1161	54	1214	25	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8362_CONTIG_1	10	+	1641	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	26	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8644_CONTIG_1	4	+	1744	13	incomplete-splice_match	ALB	ENST00000295897	2263	15	329	190	internal_fragment	FALSE	canonical	0	0	1613	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	91	1587	50	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1043_CONTIG_1	3	+	973	5	full-splice_match	TM4SF4	ENST00000305354	2101	5	723	405	multi-exon	FALSE	canonical	0	0	772	2	NA	0	0	FALSE	NA	NA	0	A	coding	202	606	182	787	40	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6595_CONTIG_1	16	-	395	3	full-splice_match	MT1G	ENST00000379811	405	3	0	10	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	49	147	150	296	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3980_CONTIG_1	3	+	1017	6	incomplete-splice_match	ALAS1	ENST00000469224	2125	11	1101	7	internal_fragment	FALSE	canonical	0	0	863	2	NA	0	0	FALSE	NA	NA	0	C	coding	313	939	77	1015	25	0.222	0.778	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8388_CONTIG_1	19	+	718	7	full-splice_match	GPX4	ENST00000354171	908	7	120	70	multi-exon	FALSE	canonical	0	0	548	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5907_CONTIG_1	9	-	1290	6	novel_not_in_catalog	PLIN2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	45	2	NA	0	0	TRUE	NA	NA	0	C	coding	171	513	68	580	15	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6062_CONTIG_1	10	-	912	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	165	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4257_CONTIG_1	9	+	1458	15	full-splice_match	ASS1	ENST00000352480	1564	15	35	71	multi-exon	FALSE	canonical	0	0	1230	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	38	1273	10	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3012_CONTIG_1	14	-	313	2	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	586	551	internal_fragment	FALSE	canonical	0	0	94	2	NA	0	0	FALSE	NA	NA	0	C	coding	45	135	178	312	35	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8326_CONTIG_1	16	+	1229	5	full-splice_match	HP	ENST00000398131	1252	5	17	6	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4658_CONTIG_1	6	+	833	5	full-splice_match	C6orf48	ENST00000375638	847	5	8	6	multi-exon	FALSE	canonical	0	0	620	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3649_CONTIG_1	4	+	2059	15	full-splice_match	ALB	ENST00000295897	2263	15	48	156	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2328_CONTIG_1	1	-	777	6	incomplete-splice_match	EPRS	ENST00000366923	5014	32	4134	103	5prime_fragment	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.55	0.45	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2790_CONTIG_1	4	+	1620	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	322	321	internal_fragment	FALSE	canonical	0	0	1552	2	NA	1	0	FALSE	NA	NA	0	C	coding	499	1497	98	1594	30	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4701_CONTIG_1	2	+	2050	18	incomplete-splice_match	NRBP1	ENST00000233557	2887	19	706	131	internal_fragment	TRUE	canonical	0	0	1629	2	NA	0	0	FALSE	NA	NA	0	A	coding	535	1605	127	1731	30	0.418	0.582	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3283_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7797_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4656_CONTIG_1	13	-	1982	7	novel_in_catalog	N4BP2L2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	15	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3483_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5576_CONTIG_1	11	+	824	7	full-splice_match	RPS3	ENST00000531188	2097	7	33	1240	multi-exon	FALSE	canonical	0	0	764	2	NA	0	0	FALSE	NA	NA	0	C	coding	243	729	30	758	45	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6480_CONTIG_1	19	+	494	4	full-splice_match	APOC2	ENST00000252490	717	4	68	155	multi-exon	FALSE	canonical	0	0	250	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	36	338	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5385_CONTIG_1	19	+	1150	4	full-splice_match	APOE	ENST00000252486	1208	4	44	14	multi-exon	FALSE	canonical	0	0	303	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2145_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3314_CONTIG_1	13	-	833	6	full-splice_match	TPT1	ENST00000530705	1028	6	187	8	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	115	630	40	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6423_CONTIG_1	12	-	796	8	full-splice_match	NACA	ENST00000356769	2690	8	1898	-4	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	215	645	40	684	10	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6727_CONTIG_1	11	-	533	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	366	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	165	495	39	533	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_109_CONTIG_1	14	-	474	2	full-splice_match	RPL36AL	ENST00000298289	746	2	60	212	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	106	318	101	418	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7207_CONTIG_1	11	+	1843	14	full-splice_match	F2	ENST00000311907	2023	14	48	132	multi-exon	FALSE	canonical	0	0	1733	2	NA	0	0	FALSE	NA	NA	0	C	coding	611	1833	9	1841	35	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7128_CONTIG_1	1	-	1815	9	full-splice_match	CRYZ	ENST00000340866	1888	9	19	54	multi-exon	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5837_CONTIG_1	5	-	2007	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	49	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.356	0.644	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4024_CONTIG_1	19	+	1154	4	full-splice_match	APOE	ENST00000252486	1208	4	44	10	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8725_CONTIG_1	10	+	1828	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	32	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1615_CONTIG_1	11	+	938	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	50	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6522_CONTIG_1	9	-	800	6	full-splice_match	RPS6	ENST00000380394	1387	6	18	569	multi-exon	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	42	788	60	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_675_CONTIG_1	X	+	1546	11	full-splice_match	PGK1	ENST00000373316	4887	11	45	3296	multi-exon	FALSE	canonical	0	0	1335	2	NA	0	0	FALSE	NA	NA	0	C	coding	417	1251	123	1373	25	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4128_CONTIG_1	3	+	2307	17	full-splice_match	TF	ENST00000402696	2968	17	437	224	multi-exon	FALSE	canonical	0	0	2110	2	NA	1	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	40	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_490_CONTIG_1	17	-	296	3	incomplete-splice_match	APOH	ENST00000577982	707	6	132	279	internal_fragment	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2806_CONTIG_1	19	+	867	4	full-splice_match	FTL	ENST00000331825	878	4	8	3	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2342_CONTIG_1	16	+	1406	7	full-splice_match	HP	ENST00000355906	1443	7	31	6	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2994_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2067_CONTIG_1	11	-	1115	8	incomplete-splice_match	CTSF	ENST00000310325	2035	13	914	6	5prime_fragment	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	B	coding	194	582	67	648	25	0.722	0.278	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7204_CONTIG_1	3	-	1485	10	incomplete-splice_match	ACOX2	ENST00000302819	2426	15	927	14	5prime_fragment	FALSE	canonical	0	0	68	2	NA	1	0	FALSE	NA	NA	0	A	coding	465	1395	14	1408	45	0.23	0.77	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5749_CONTIG_1	14	-	1009	3	full-splice_match	PSMB5	ENST00000361611	1294	3	251	34	multi-exon	FALSE	canonical	0	0	211	2	NA	0	0	FALSE	NA	NA	0	A	coding	263	789	14	802	35	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3171_CONTIG_1	14	+	1553	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	13	23	multi-exon	FALSE	canonical	0	0	1134	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	67	1335	45	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3937_CONTIG_1	10	-	904	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	173	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6216_CONTIG_1	4	-	1865	9	full-splice_match	ADH4	ENST00000265512	1993	9	0	128	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6858_CONTIG_1	16	+	389	3	full-splice_match	MT1E	ENST00000306061	704	3	306	9	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5636_CONTIG_1	12	+	612	5	incomplete-splice_match	ACADS	ENST00000242592	1950	10	163	1175	3prime_fragment	FALSE	canonical	0	0	460	2	NA	0	0	FALSE	NA	NA	0	A	coding	169	507	106	612	20	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3073_CONTIG_1	1	-	2021	13	incomplete-splice_match	F5	ENST00000367797	7024	25	4973	30	5prime_fragment	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.652	0.348	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_103_CONTIG_1	17	-	2331	10	novel_not_in_catalog	ASGR2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	149	2	NA	1	0	TRUE	NA	NA	0	C	coding	306	918	220	1137	10	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1007_CONTIG_1	4	-	1562	10	full-splice_match	FGG	ENST00000404648	1760	10	193	5	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_561_CONTIG_1	4	-	376	5	incomplete-splice_match	ANXA5	ENST00000513428	868	6	17	475	internal_fragment	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6088_CONTIG_1	1	+	1704	6	full-splice_match	CMPK1	ENST00000371873	2930	6	111	1115	multi-exon	FALSE	canonical	0	0	683	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4745_CONTIG_1	12	+	1427	5	full-splice_match	HSD17B6	ENST00000322165	1512	5	-4	89	multi-exon	FALSE	canonical	0	0	850	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	115	1065	35	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1997_CONTIG_1	16	+	722	7	full-splice_match	UBE2I	ENST00000397514	2976	7	150	2104	multi-exon	FALSE	canonical	0	0	538	2	NA	0	0	FALSE	NA	NA	0	A	coding	123	369	231	599	10	0.394	0.606	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2213_CONTIG_1	12	+	772	7	novel_in_catalog	PCBP2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	511	2	NA	1	0	FALSE	NA	NA	0	C	coding	138	414	132	545	0	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8286_CONTIG_1	19	+	1162	4	full-splice_match	APOE	ENST00000252486	1208	4	44	2	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6036_CONTIG_1	20	+	847	3	incomplete-splice_match	ZGPAT	ENST00000355969	1871	7	1018	6	internal_fragment	FALSE	canonical	0	0	491	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	64	627	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_686_CONTIG_1	2	+	1592	8	full-splice_match	KHK	ENST00000260598	2397	8	0	805	multi-exon	FALSE	canonical	0	0	1289	2	NA	0	0	FALSE	NA	NA	0	C	coding	298	894	479	1372	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7604_CONTIG_1	12	-	1095	8	full-splice_match	RPLP0	ENST00000392514	1218	8	101	22	multi-exon	FALSE	canonical	0	0	28	2	NA	3	0	FALSE	NA	NA	0	C	coding	317	951	77	1027	30	0.226	0.774	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5399_CONTIG_1	2	+	1572	4	full-splice_match	SPTBN1	ENST00000467371	3332	4	1650	110	multi-exon	FALSE	canonical	0	0	358	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7692_CONTIG_1	13	-	838	6	full-splice_match	TPT1	ENST00000530705	1028	6	187	3	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	115	630	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5089_CONTIG_1	1	+	866	2	full-splice_match	APCS	ENST00000255040	926	2	1	59	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1136_CONTIG_1	3	+	1075	4	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	489	2	NA	0	0	FALSE	NA	NA	0	C	coding	208	624	81	704	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5027_CONTIG_1	4	+	1958	15	full-splice_match	ALB	ENST00000295897	2263	15	48	257	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4390_CONTIG_1	3	-	959	5	incomplete-splice_match	ACAA1	ENST00000450296	1570	10	593	18	5prime_fragment	FALSE	canonical	0	0	191	2	NA	0	0	FALSE	NA	NA	0	B	coding	171	513	134	646	45	0.534	0.466	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1633_CONTIG_1	4	+	2001	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1847	2	NA	0	0	TRUE	NA	NA	0	C	coding	347	1041	42	1082	45	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8030_CONTIG_1	9	+	673	6	full-splice_match	ORM1	ENST00000259396	802	6	42	87	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8167_CONTIG_1	3	+	1390	6	novel_in_catalog	AHSG	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	755	2	NA	1	0	FALSE	NA	NA	0	C	coding	339	1017	81	1097	30	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1255_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	50	171	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_139_CONTIG_1	12	-	320	4	incomplete-splice_match	RPLP0	ENST00000313104	912	7	0	592	internal_fragment	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_82_CONTIG_1	17	-	768	8	full-splice_match	DCXR	ENST00000306869	887	8	31	88	multi-exon	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	coding	244	732	20	751	15	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4204_CONTIG_1	17	-	1646	12	full-splice_match	SHMT1	ENST00000316694	2464	12	62	756	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	481	1443	80	1522	5	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8375_CONTIG_1	GL000220.1	+	637	3	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	333	2	NA	1	2	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5827_CONTIG_1	11	-	870	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	330	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2682_CONTIG_1	1	+	449	5	incomplete-splice_match	SCCPDH	ENST00000366510	2503	12	1289	765	internal_fragment	FALSE	canonical	0	0	271	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4253_CONTIG_1	1	+	1461	8	incomplete-splice_match	SERINC2	ENST00000536859	1955	10	513	-19	internal_fragment	FALSE	canonical	0	0	915	2	NA	1	0	FALSE	NA	NA	0	A	coding	341	1023	26	1048	10	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1256_CONTIG_1	2	+	258	3	novel_not_in_catalog	RNF181	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	129	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7902_CONTIG_1	4	+	157	2	incomplete-splice_match	ALB	ENST00000515133	665	4	0	508	3prime_fragment	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7253_CONTIG_1	4	-	1072	8	incomplete-splice_match	GC	ENST00000509740	1510	12	-14	452	internal_fragment	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	337	1011	62	1072	45	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4643_CONTIG_1	3	-	626	4	full-splice_match	RPL29	ENST00000294189	723	4	47	50	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	159	477	48	524	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4677_CONTIG_1	12	+	369	2	incomplete-splice_match	COX6A1	ENST00000229379	572	3	145	58	internal_fragment	FALSE	canonical	0	0	138	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4004_CONTIG_1	22	+	1379	3	full-splice_match	ATF4	ENST00000396680	1420	3	5	36	multi-exon	FALSE	canonical	0	0	501	2	NA	1	0	FALSE	NA	NA	0	C	coding	351	1053	276	1328	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2064_CONTIG_1	11	-	802	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	97	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	254	762	39	800	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1004_CONTIG_1	9	-	2050	13	full-splice_match	ALDH1A1	ENST00000297785	2107	13	2	55	multi-exon	FALSE	canonical	0	0	119	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8587_CONTIG_1	10	+	2618	11	full-splice_match	ACADSB	ENST00000358776	5859	11	0	3241	multi-exon	FALSE	canonical	0	0	1242	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3525_CONTIG_1	11	-	888	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	11	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4992_CONTIG_1	11	-	688	2	full-splice_match	COA4	ENST00000355693	960	2	120	152	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	A	coding	87	261	129	389	30	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_380_CONTIG_1	4	+	1173	2	antisense	novelGene_FGA_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	1034	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.428	0.572	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3491_CONTIG_1	6	-	1383	6	incomplete-splice_match	EEF1A1	ENST00000331523	1923	8	539	1	5prime_fragment	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	coding	361	1083	10	1092	20	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7835_CONTIG_1	4	+	807	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	643	33	internal_fragment	FALSE	canonical	0	0	675	2	NA	1	0	FALSE	NA	NA	0	C	coding	140	420	230	649	50	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3676_CONTIG_1	16	+	1152	5	full-splice_match	HP	ENST00000398131	1252	5	14	86	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1379_CONTIG_1	17	-	1901	6	full-splice_match	ACTG1	ENST00000331925	1994	6	76	17	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	72	1196	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6933_CONTIG_1	2	+	2321	5	full-splice_match	UGT1A4	ENST00000373409	2388	5	16	51	multi-exon	FALSE	canonical	0	0	1334	2	NA	0	0	FALSE	NA	NA	0	C	coding	534	1602	28	1629	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1117_CONTIG_1	4	+	1569	8	full-splice_match	FGB	ENST00000302068	1975	8	59	347	multi-exon	FALSE	canonical	0	0	1248	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	40	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_588_CONTIG_1	4	+	2020	15	full-splice_match	ALB	ENST00000295897	2263	15	48	195	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4233_CONTIG_1	10	-	898	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	179	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8499_CONTIG_1	4	+	502	4	incomplete-splice_match	FGB	ENST00000509493	1164	6	281	381	internal_fragment	FALSE	canonical	0	0	294	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6575_CONTIG_1	13	-	1767	14	full-splice_match	PCID2	ENST00000337344	1898	14	54	77	multi-exon	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	coding	399	1197	24	1220	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3929_CONTIG_1	3	-	1616	6	full-splice_match	ARF4	ENST00000303436	1660	6	21	23	multi-exon	TRUE	canonical	0	0	314	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4237_CONTIG_1	17	-	733	8	full-splice_match	DCXR	ENST00000306869	887	8	35	119	multi-exon	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	C	coding	239	717	16	732	5	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_79_CONTIG_1	16	+	1210	5	full-splice_match	HP	ENST00000398131	1252	5	17	25	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_671_CONTIG_1	12	-	1421	8	full-splice_match	SDS	ENST00000257549	1606	8	-1	186	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	128	1108	35	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5953_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-6	449	multi-exon	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	41	1006	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5430_CONTIG_1	3	-	1517	12	incomplete-splice_match	ITIH4	ENST00000491663	3093	23	1596	-20	5prime_fragment	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	B	coding	273	819	568	1386	15	0.67	0.33	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1229_CONTIG_1	11	-	839	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	60	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	5	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4429_CONTIG_1	17	+	2431	10	novel_not_in_catalog	EIF4A1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1784	2	NA	2	0	FALSE	NA	NA	0	B	coding	160	480	992	1471	30	0.762	0.238	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8631_CONTIG_1	4	+	1183	5	incomplete-splice_match	FGB	ENST00000509493	1164	6	210	-229	internal_fragment	FALSE	canonical	0	0	651	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2257_CONTIG_1	6	+	1031	5	full-splice_match	IYD	ENST00000344419	8742	5	128	7583	multi-exon	FALSE	canonical	0	0	699	2	NA	0	0	FALSE	NA	NA	0	C	coding	289	867	13	879	15	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1779_CONTIG_1	19	-	1178	6	full-splice_match	PLEKHJ1	ENST00000326631	1206	6	0	28	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	A	coding	149	447	73	519	35	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5315_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	50	157	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1374_CONTIG_1	4	+	2061	15	full-splice_match	ALB	ENST00000295897	2263	15	48	154	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_417_CONTIG_1	16	-	2216	6	full-splice_match	ARL6IP1	ENST00000304414	2407	6	129	62	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3759_CONTIG_1	14	-	1378	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	26	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5074_CONTIG_1	17	-	1167	8	full-splice_match	APOH	ENST00000205948	1176	8	7	2	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6723_CONTIG_1	6	-	2644	13	full-splice_match	MUT	ENST00000274813	3749	13	-22	1127	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4059_CONTIG_1	17	-	1106	8	full-splice_match	APOH	ENST00000205948	1176	8	21	49	multi-exon	FALSE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_503_CONTIG_1	6	-	1058	5	full-splice_match	HLA-DPA1	ENST00000428995	1157	5	97	2	multi-exon	FALSE	canonical	0	0	34	2	NA	1	0	FALSE	NA	NA	0	A	coding	207	621	94	714	25	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3986_CONTIG_1	19	-	1992	3	incomplete-splice_match	ZNF625-ZNF20	ENST00000430024	2651	8	624	35	5prime_fragment	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2051_CONTIG_1	9	-	1233	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	29	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	65	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3263_CONTIG_1	1	+	1812	11	incomplete-splice_match	CFH	ENST00000367429	4127	22	298	2017	internal_fragment	TRUE	canonical	0	0	1638	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.688	0.312	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6069_CONTIG_1	9	-	1692	5	incomplete-splice_match	HNRNPK	ENST00000376281	2928	17	1233	3	5prime_fragment	FALSE	canonical	0	0	68	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1656_CONTIG_1	4	+	2021	15	full-splice_match	ALB	ENST00000295897	2263	15	50	192	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8342_CONTIG_1	20	-	1839	11	full-splice_match	EDEM2	ENST00000374492	1912	11	65	8	multi-exon	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	A	coding	578	1734	42	1775	25	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5023_CONTIG_1	15	-	1594	2	incomplete-splice_match	VPS39	ENST00000568357	593	3	256	-1257	5prime_fragment	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8702_CONTIG_1	4	+	1556	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	416	291	internal_fragment	FALSE	canonical	0	0	1526	2	NA	4	0	FALSE	NA	NA	0	C	coding	499	1497	4	1500	40	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2406_CONTIG_1	11	-	850	5	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	18	2	NA	0	0	TRUE	NA	NA	0	C	coding	252	756	39	794	15	0.942	0.058	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1727_CONTIG_1	11	+	1272	7	novel_in_catalog	SERPING1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	810	2	NA	0	0	FALSE	NA	NA	0	C	coding	191	573	489	1061	20	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1646_CONTIG_1	22	-	816	7	incomplete-splice_match	RPL3	ENST00000401609	1289	9	462	11	5prime_fragment	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	C	coding	251	753	14	766	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8532_CONTIG_1	16	+	1127	5	full-splice_match	HP	ENST00000398131	1252	5	31	94	multi-exon	FALSE	canonical	0	0	278	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	14	1054	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4095_CONTIG_1	X	+	1014	9	incomplete-splice_match	OTC	ENST00000039007	1585	10	270	301	internal_fragment	FALSE	canonical	0	0	887	2	NA	0	0	FALSE	NA	NA	0	C	coding	221	663	282	944	65	0.206	0.794	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4214_CONTIG_1	4	+	1941	15	full-splice_match	ALB	ENST00000295897	2263	15	50	272	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6057_CONTIG_1	19	+	1021	7	incomplete-splice_match	CYP2B6	ENST00000324071	3054	9	-18	2051	3prime_fragment	FALSE	canonical	0	0	989	2	NA	0	0	FALSE	NA	NA	0	B	coding	332	996	26	1021	20	0.68	0.32	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_784_CONTIG_1	4	+	1571	8	full-splice_match	FGB	ENST00000302068	1975	8	55	349	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8083_CONTIG_1	7	-	1370	3	incomplete-splice_match	CYP3A4	ENST00000354593	2318	8	869	79	5prime_fragment	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1937_CONTIG_1	14	-	1086	5	full-splice_match	TMEM55B	ENST00000554028	1118	5	526	-494	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	A	coding	110	330	87	416	35	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7850_CONTIG_1	11	-	877	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	22	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6384_CONTIG_1	19	+	773	2	full-splice_match	MRPL34	ENST00000252602	968	2	195	0	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	92	276	31	306	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5726_CONTIG_1	2	-	1411	7	full-splice_match	LAPTM4A	ENST00000175091	1765	7	346	8	multi-exon	FALSE	canonical	0	0	273	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3799_CONTIG_1	16	-	1876	14	full-splice_match	CES1	ENST00000361503	1835	14	93	-134	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	567	1701	39	1739	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7569_CONTIG_1	4	+	1751	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	177	3prime_fragment	FALSE	canonical	0	0	1693	2	NA	0	0	FALSE	NA	NA	0	C	coding	570	1710	42	1751	20	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2254_CONTIG_1	7	-	2355	10	full-splice_match	SLC35B4	ENST00000378509	6797	10	-15	4457	multi-exon	FALSE	canonical	0	0	392	2	NA	0	0	FALSE	NA	NA	0	A	coding	331	993	316	1308	20	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3170_CONTIG_1	19	+	1882	18	novel_in_catalog	PRKCSH	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	1749	2	NA	1	0	FALSE	NA	NA	0	B	coding	535	1605	126	1730	10	0.748	0.252	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4443_CONTIG_1	4	-	1969	9	full-splice_match	ADH4	ENST00000265512	1993	9	2	22	multi-exon	FALSE	canonical	0	0	91	2	NA	3	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_401_CONTIG_1	1	-	466	4	full-splice_match	APOA2	ENST00000367990	474	4	4	4	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	55	354	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6029_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8216_CONTIG_1	11	-	877	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	22	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3592_CONTIG_1	10	+	1129	11	novel_not_in_catalog	AKR1C1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1087	2	NA	0	0	TRUE	NA	NA	0	C	coding	323	969	30	998	15	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8220_CONTIG_1	11	-	866	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	33	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4474_CONTIG_1	19	+	1164	4	full-splice_match	APOE	ENST00000252486	1208	4	44	0	multi-exon	FALSE	canonical	0	0	303	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	0	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2533_CONTIG_1	11	-	1554	10	full-splice_match	HPX	ENST00000265983	1652	10	74	24	multi-exon	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	28	1413	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2749_CONTIG_1	9	+	1467	15	full-splice_match	ASS1	ENST00000352480	1564	15	33	64	multi-exon	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	40	1275	10	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8303_CONTIG_1	4	+	1713	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	2	172	multi-exon	FALSE	canonical	0	0	1354	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7963_CONTIG_1	7	-	1160	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	21	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1225_CONTIG_1	X	+	893	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	172	multi-exon	FALSE	canonical	0	0	524	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	180	692	20	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4352_CONTIG_1	16	+	1413	7	full-splice_match	HP	ENST00000355906	1443	7	31	-1	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5047_CONTIG_1	9	+	1439	15	full-splice_match	ASS1	ENST00000352480	1564	15	33	92	multi-exon	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	40	1275	30	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8119_CONTIG_1	4	+	1578	8	full-splice_match	FGB	ENST00000302068	1975	8	59	338	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2479_CONTIG_1	2	+	1188	5	incomplete-splice_match	SLC3A1	ENST00000409380	2424	7	1218	18	internal_fragment	FALSE	canonical	0	0	583	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	60	0.524	0.476	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5619_CONTIG_1	14	-	1014	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	449	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_636_CONTIG_1	17	-	373	3	novel_in_catalog	ASGR1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5238_CONTIG_1	9	-	1578	9	full-splice_match	ALDOB	ENST00000374855	2451	9	53	820	multi-exon	FALSE	canonical	0	0	62	2	NA	1	0	FALSE	NA	NA	0	C	coding	364	1092	73	1164	45	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_913_CONTIG_1	5	+	984	4	full-splice_match	RGS14	ENST00000506944	590	4	34	-428	multi-exon	FALSE	canonical	0	0	262	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4845_CONTIG_1	19	+	1155	4	full-splice_match	APOE	ENST00000252486	1208	4	42	11	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2314_CONTIG_1	6	-	1709	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	38	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8308_CONTIG_1	7	-	1711	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	98	multi-exon	FALSE	canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	15	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8684_CONTIG_1	3	-	977	7	incomplete-splice_match	ALS2CL	ENST00000383742	1747	11	711	59	5prime_fragment	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	A	coding	190	570	52	621	30	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1955_CONTIG_1	16	-	1609	10	full-splice_match	TUFM	ENST00000313511	2071	10	73	389	multi-exon	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	A	coding	452	1356	76	1431	30	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_468_CONTIG_1	4	+	2003	15	full-splice_match	ALB	ENST00000295897	2263	15	48	212	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2349_CONTIG_1	16	+	910	5	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	724	2	NA	1	0	TRUE	NA	NA	0	C	coding	236	708	28	735	5	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8349_CONTIG_1	9	-	936	4	novel_not_in_catalog	SIGMAR1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	280	2	NA	1	0	TRUE	NA	NA	0	A	coding	172	516	130	645	10	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3446_CONTIG_1	4	+	1985	15	full-splice_match	ALB	ENST00000295897	2263	15	48	230	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2032_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1943_CONTIG_1	4	+	1914	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1753	2	NA	0	0	TRUE	NA	NA	0	C	coding	562	1686	42	1727	35	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1086_CONTIG_1	4	-	1485	9	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	318	954	332	1285	40	0.24	0.76	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_667_CONTIG_1	16	+	1086	3	full-splice_match	HP	ENST00000566821	3024	3	1904	34	multi-exon	FALSE	canonical	0	0	177	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	270	953	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4329_CONTIG_1	10	+	1554	7	incomplete-splice_match	CYP2C18	ENST00000285979	2418	9	-206	1070	3prime_fragment	FALSE	canonical	0	0	1366	2	NA	0	0	FALSE	NA	NA	0	B	coding	383	1149	406	1554	20	0.648	0.352	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4799_CONTIG_1	11	+	1048	6	novel_not_in_catalog	DGAT2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	832	2	NA	1	0	TRUE	NA	NA	0	A	coding	250	750	212	961	40	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3320_CONTIG_1	3	+	890	3	full-splice_match	ECE2	ENST00000324557	1823	3	108	825	multi-exon	FALSE	canonical	0	0	417	2	NA	0	0	FALSE	NA	NA	0	A	coding	159	477	226	702	5	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2901_CONTIG_1	4	+	1451	11	full-splice_match	ALB	ENST00000511370	1519	11	44	24	multi-exon	FALSE	canonical	0	0	1342	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	453	1316	15	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5269_CONTIG_1	1	-	731	4	incomplete-splice_match	FCN3	ENST00000354982	997	7	254	12	5prime_fragment	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	177	531	86	616	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1812_CONTIG_1	4	+	2027	15	full-splice_match	ALB	ENST00000295897	2263	15	50	186	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	55	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3557_CONTIG_1	16	+	1155	4	full-splice_match	QPRT	ENST00000395384	2343	4	116	1072	multi-exon	FALSE	canonical	0	0	726	2	NA	0	0	FALSE	NA	NA	0	C	coding	297	891	46	936	25	0.17	0.83	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4033_CONTIG_1	11	+	1902	14	full-splice_match	F2	ENST00000311907	2023	14	45	76	multi-exon	FALSE	canonical	0	0	1736	2	NA	0	0	FALSE	NA	NA	0	C	coding	622	1866	12	1877	30	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7699_CONTIG_1	9	-	1567	9	incomplete-splice_match	NFIB	ENST00000397581	3318	12	852	899	internal_fragment	FALSE	canonical	0	0	186	2	NA	0	0	FALSE	NA	NA	0	A	coding	469	1407	160	1566	40	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6331_CONTIG_1	4	+	2021	15	full-splice_match	ALB	ENST00000295897	2263	15	49	193	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4985_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	48	161	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2004_CONTIG_1	2	-	1552	9	full-splice_match	DUSP11	ENST00000272444	1653	9	54	47	multi-exon	FALSE	canonical	0	0	230	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3184_CONTIG_1	20	+	202	2	full-splice_match	ZGPAT	ENST00000484569	749	2	529	18	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_889_CONTIG_1	18	-	1841	12	full-splice_match	ATP5A1	ENST00000398752	1916	12	67	8	multi-exon	FALSE	canonical	0	0	115	2	NA	0	0	FALSE	NA	NA	0	C	coding	553	1659	56	1714	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8278_CONTIG_1	4	+	2010	15	full-splice_match	ALB	ENST00000295897	2263	15	50	203	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5773_CONTIG_1	9	-	1262	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	0	multi-exon	FALSE	canonical	0	0	208	2	NA	1	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	10	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5064_CONTIG_1	18	+	613	4	full-splice_match	TTR	ENST00000237014	957	4	151	193	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3130_CONTIG_1	2	+	1541	11	full-splice_match	AGXT	ENST00000307503	1865	11	257	67	multi-exon	FALSE	canonical	0	0	1201	2	NA	0	0	FALSE	NA	NA	0	C	coding	392	1176	131	1306	20	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_360_CONTIG_1	1	+	1456	5	incomplete-splice_match	FMO3	ENST00000392085	2066	9	614	-4	internal_fragment	FALSE	canonical	0	0	736	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.548	0.452	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4353_CONTIG_1	4	+	1611	8	full-splice_match	FGB	ENST00000302068	1975	8	55	309	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7401_CONTIG_1	11	-	878	4	full-splice_match	APOA1	ENST00000236850	1227	4	324	25	multi-exon	FALSE	canonical	0	0	22	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	43	843	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7560_CONTIG_1	4	+	862	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	606	15	internal_fragment	FALSE	canonical	0	0	712	2	NA	1	0	FALSE	NA	NA	0	C	coding	140	420	267	686	50	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_78_CONTIG_1	6	+	937	4	full-splice_match	HEBP2	ENST00000607197	10014	4	8	9069	multi-exon	TRUE	canonical	0	0	688	2	NA	0	0	FALSE	NA	NA	0	A	coding	205	615	270	884	45	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8243_CONTIG_1	1	-	981	8	full-splice_match	SDHB	ENST00000375499	1153	8	138	34	multi-exon	FALSE	canonical	0	0	85	2	NA	0	0	FALSE	NA	NA	0	A	coding	280	840	14	853	30	0.358	0.642	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5673_CONTIG_1	4	+	1168	9	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	760	3prime_fragment	FALSE	canonical	0	0	1099	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	42	1166	45	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3999_CONTIG_1	11	-	338	4	full-splice_match	TMEM258	ENST00000537328	575	4	22	215	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2572_CONTIG_1	9	+	1676	4	full-splice_match	SLC31A2	ENST00000259392	1785	4	70	39	multi-exon	FALSE	canonical	0	0	326	2	NA	1	0	FALSE	NA	NA	0	C	coding	143	429	64	492	50	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5132_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1580_CONTIG_1	7	-	1115	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	66	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5472_CONTIG_1	21	-	2528	17	full-splice_match	CBS	ENST00000398165	2605	17	71	6	multi-exon	FALSE	canonical	0	0	105	2	NA	0	0	FALSE	NA	NA	0	C	coding	551	1653	190	1842	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2026_CONTIG_1	19	+	488	4	full-splice_match	RPS15	ENST00000586686	599	4	18	93	multi-exon	FALSE	canonical	0	0	345	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	22	456	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2475_CONTIG_1	1	-	1076	8	novel_not_in_catalog	NRAS	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	102	2	NA	0	0	TRUE	NA	NA	0	B	coding	189	567	120	686	25	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3053_CONTIG_1	1	-	1498	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	50	46	multi-exon	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	70	1461	40	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4881_CONTIG_1	2	-	1708	2	incomplete-splice_match	MAP3K2	ENST00000344908	2135	16	1597	-1170	5prime_fragment	FALSE	canonical	0	0	137	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.428	0.572	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6609_CONTIG_1	3	+	455	3	full-splice_match	NDUFB4	ENST00000184266	671	3	38	178	multi-exon	FALSE	canonical	0	0	340	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5855_CONTIG_1	16	+	2303	9	incomplete-splice_match	ACSM2A	ENST00000575558	1527	11	346	-1122	internal_fragment	FALSE	canonical	0	0	992	2	NA	1	0	FALSE	NA	NA	0	C	coding	369	1107	1	1107	90	0.172	0.828	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5479_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5665_CONTIG_1	13	+	1040	2	intergenic	novelGene_289	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7693_CONTIG_1	1	+	1005	8	full-splice_match	RPL5	ENST00000370321	1043	8	12	26	multi-exon	FALSE	canonical	0	0	872	2	NA	0	0	FALSE	NA	NA	0	C	coding	297	891	79	969	50	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1584_CONTIG_1	4	+	1905	15	full-splice_match	ALB	ENST00000295897	2263	15	48	310	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	70	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3537_CONTIG_1	5	-	2115	12	novel_in_catalog	SLC38A9	novel	NA	NA	NA	NA	no_combination_of_known_junctions	TRUE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6593_CONTIG_1	19	+	745	8	full-splice_match	NDUFS7	ENST00000233627	1034	8	280	9	multi-exon	FALSE	canonical	0	0	560	2	NA	0	0	FALSE	NA	NA	0	A	coding	213	639	17	655	5	0.346	0.654	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5882_CONTIG_1	17	-	1431	3	full-splice_match	ACTG1	ENST00000574671	1678	3	225	22	multi-exon	FALSE	canonical	0	0	436	2	NA	2	0	FALSE	NA	NA	0	C	coding	253	759	1	759	25	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3584_CONTIG_1	8	-	789	2	genic_intron	novelGene_733	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	453	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.464	0.536	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8135_CONTIG_1	16	+	378	3	full-splice_match	MT1F	ENST00000334350	690	3	293	19	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7786_CONTIG_1	2	+	573	4	incomplete-splice_match	ATRAID	ENST00000606999	956	7	351	32	internal_fragment	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	66	198	197	394	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5235_CONTIG_1	3	+	1406	8	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1214	2	NA	1	0	TRUE	NA	NA	0	C	coding	367	1101	87	1187	20	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2930_CONTIG_1	11	-	734	7	incomplete-splice_match	RDX	ENST00000530131	1911	12	0	1177	internal_fragment	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	A	coding	161	483	250	732	45	0.278	0.722	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7364_CONTIG_1	4	+	2049	15	full-splice_match	ALB	ENST00000295897	2263	15	50	164	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6085_CONTIG_1	1	-	1844	9	full-splice_match	CYP2J2	ENST00000371204	1896	9	19	33	multi-exon	FALSE	canonical	0	0	235	2	NA	0	0	FALSE	NA	NA	0	A	coding	498	1494	38	1531	60	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3028_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	50	167	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2504_CONTIG_1	1	+	1157	4	novel_not_in_catalog	ATF3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	609	2	NA	0	0	FALSE	NA	NA	0	A	coding	181	543	262	804	15	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2130_CONTIG_1	4	-	1508	10	full-splice_match	FGG	ENST00000404648	1760	10	193	59	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4167_CONTIG_1	10	-	1963	6	novel_not_in_catalog	MAT1A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	91	2	NA	1	0	TRUE	NA	NA	0	B	coding	232	696	32	727	20	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_879_CONTIG_1	17	-	1127	4	full-splice_match	H3F3B	ENST00000254810	2705	4	2	1576	multi-exon	TRUE	canonical	0	0	121	2	NA	1	0	FALSE	NA	NA	0	C	coding	136	408	132	539	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5203_CONTIG_1	10	-	914	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	163	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7885_CONTIG_1	8	-	344	3	incomplete-splice_match	PABPC1	ENST00000523636	818	7	-2	476	internal_fragment	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	coding	98	294	49	342	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7761_CONTIG_1	3	+	340	3	novel_not_in_catalog	ACY1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	130	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5509_CONTIG_1	8	-	1595	9	full-splice_match	CLU	ENST00000560366	2841	9	107	1139	multi-exon	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	82	1425	15	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_898_CONTIG_1	11	-	961	2	novel_in_catalog	HPX	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	94	2	NA	0	0	FALSE	NA	NA	0	C	coding	76	228	79	306	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1444_CONTIG_1	8	-	985	8	full-splice_match	EEF1D	ENST00000395119	1249	8	264	0	multi-exon	FALSE	canonical	0	0	68	2	NA	0	0	FALSE	NA	NA	0	C	coding	281	843	76	918	0	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_575_CONTIG_1	2	-	1125	3	full-splice_match	ORMDL1	ENST00000325795	2692	3	442	1125	multi-exon	FALSE	canonical	0	0	519	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3695_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-15	454	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	50	1009	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1195_CONTIG_1	12	-	589	2	full-splice_match	UBC	ENST00000339647	2688	2	497	1602	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	174	522	68	589	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4110_CONTIG_1	2	+	360	2	genic_intron	novelGene_900	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	27	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3684_CONTIG_1	19	+	406	4	full-splice_match	APOC1	ENST00000252491	461	4	44	11	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5510_CONTIG_1	7	-	409	4	incomplete-splice_match	MLXIPL	ENST00000395189	2999	16	1500	1090	internal_fragment	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	B	coding	94	282	127	408	20	0.49	0.51	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7742_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	50	170	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_214_CONTIG_1	17	-	2129	8	novel_not_in_catalog	DDX5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	66	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2611_CONTIG_1	2	+	2373	5	full-splice_match	UGT1A4	ENST00000373409	2388	5	16	-1	multi-exon	FALSE	canonical	0	0	1334	2	NA	0	0	FALSE	NA	NA	0	C	coding	534	1602	28	1629	15	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5172_CONTIG_1	10	+	1137	9	full-splice_match	AKR1C1	ENST00000380872	6705	9	170	5398	multi-exon	FALSE	canonical	0	0	951	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	23	991	45	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4953_CONTIG_1	4	+	2025	15	full-splice_match	ALB	ENST00000295897	2263	15	50	188	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_817_CONTIG_1	22	+	1277	8	incomplete-splice_match	XRCC6	ENST00000405506	1958	11	666	15	internal_fragment	FALSE	canonical	0	0	879	2	NA	0	0	FALSE	NA	NA	0	A	coding	264	792	279	1070	30	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5752_CONTIG_1	12	-	1707	13	novel_in_catalog	STAT2	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	223	2	NA	1	0	FALSE	NA	NA	0	A	coding	252	756	560	1315	30	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4380_CONTIG_1	7	-	1332	7	incomplete-splice_match	TFR2	ENST00000544242	2191	14	861	-2	5prime_fragment	FALSE	canonical	0	0	29	2	NA	1	0	FALSE	NA	NA	0	B	coding	235	705	191	895	25	0.554	0.446	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3549_CONTIG_1	12	-	1165	7	incomplete-splice_match	KRT8	ENST00000552150	1687	9	559	-37	5prime_fragment	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	316	948	47	994	45	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1196_CONTIG_1	9	-	311	4	full-splice_match	RPL35	ENST00000348462	455	4	4	140	multi-exon	FALSE	canonical	0	0	48	2	NA	0	0	FALSE	NA	NA	0	A	coding	88	264	46	309	10	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6245_CONTIG_1	10	+	1624	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	43	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7531_CONTIG_1	20	-	811	7	full-splice_match	PSMA7	ENST00000370873	996	7	32	153	multi-exon	TRUE	canonical	0	0	191	2	NA	1	0	FALSE	NA	NA	0	A	coding	238	714	96	809	70	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1218_CONTIG_1	3	-	698	6	incomplete-splice_match	ITIH4	ENST00000406595	2872	22	0	2174	internal_fragment	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	B	coding	222	666	31	696	40	0.584	0.416	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_343_CONTIG_1	19	+	633	2	incomplete-splice_match	APOE	ENST00000434152	864	4	356	-125	internal_fragment	FALSE	canonical	0	0	15	2	NA	0	0	FALSE	NA	NA	0	C	coding	203	609	23	631	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2053_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_983_CONTIG_1	4	+	427	3	incomplete-splice_match	ALB	ENST00000505649	1509	11	312	770	internal_fragment	FALSE	canonical	0	0	217	2	NA	0	0	FALSE	NA	NA	0	C	coding	30	90	338	427	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8692_CONTIG_1	4	+	2054	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	35	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6618_CONTIG_1	7	-	1319	9	full-splice_match	PON1	ENST00000222381	2568	9	175	1074	multi-exon	FALSE	canonical	0	0	131	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4599_CONTIG_1	16	+	1166	5	full-splice_match	HP	ENST00000398131	1252	5	14	72	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2763_CONTIG_1	11	-	1575	10	full-splice_match	HPX	ENST00000265983	1652	10	77	0	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7815_CONTIG_1	15	+	923	4	full-splice_match	B2M	ENST00000558401	1715	4	36	756	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7113_CONTIG_1	11	-	1574	10	full-splice_match	HPX	ENST00000265983	1652	10	74	4	multi-exon	FALSE	canonical	0	0	110	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	28	1413	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3594_CONTIG_1	3	+	598	2	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	263	2	NA	0	0	TRUE	NA	NA	0	C	coding	114	342	81	422	20	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8325_CONTIG_1	9	-	1556	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	846	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	45	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8418_CONTIG_1	16	+	1358	5	full-splice_match	HP	ENST00000398131	1252	5	-131	25	multi-exon	FALSE	canonical	0	0	440	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	176	1216	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4492_CONTIG_1	12	-	472	4	incomplete-splice_match	RND1	ENST00000309739	1681	5	28	1181	internal_fragment	FALSE	canonical	0	0	223	2	NA	0	0	FALSE	NA	NA	0	C	coding	123	369	104	472	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2811_CONTIG_1	3	+	2538	19	incomplete-splice_match	ITIH1	ENST00000540715	2741	20	202	1	internal_fragment	TRUE	canonical	0	0	2259	2	NA	1	0	FALSE	NA	NA	0	C	coding	769	2307	80	2386	15	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3775_CONTIG_1	17	-	2163	6	incomplete-splice_match	CCDC47	ENST00000225726	3466	13	1235	68	5prime_fragment	FALSE	canonical	0	0	96	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7675_CONTIG_1	4	+	1787	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-24	148	3prime_fragment	FALSE	canonical	0	0	1700	2	NA	1	0	FALSE	NA	NA	0	C	coding	579	1737	49	1785	25	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4678_CONTIG_1	14	+	1348	11	incomplete-splice_match	MTHFD1	ENST00000216605	3135	28	1790	-3	internal_fragment	FALSE	canonical	0	0	1100	2	NA	0	0	FALSE	NA	NA	0	B	coding	354	1062	32	1093	25	0.67	0.33	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_277_CONTIG_1	4	-	1544	10	full-splice_match	FGG	ENST00000404648	1760	10	196	20	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6920_CONTIG_1	4	+	2022	15	full-splice_match	ALB	ENST00000295897	2263	15	50	191	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4613_CONTIG_1	12	+	858	4	full-splice_match	PEBP1	ENST00000261313	1697	4	245	594	multi-exon	FALSE	canonical	0	0	453	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	108	668	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3472_CONTIG_1	6	+	407	2	full-splice_match	HULC	ENST00000503668	556	2	132	17	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8655_CONTIG_1	6	-	1276	10	full-splice_match	ECI2	ENST00000413766	1402	10	22	104	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	359	1077	121	1197	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8214_CONTIG_1	7	+	1226	7	incomplete-splice_match	EGFR	ENST00000454757	3938	28	2699	13	internal_fragment	FALSE	canonical	0	0	596	2	NA	0	0	FALSE	NA	NA	0	A	coding	303	909	47	955	55	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2655_CONTIG_1	14	-	1351	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	224	47	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	42	1295	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6047_CONTIG_1	4	-	1751	12	novel_in_catalog	CFI	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	273	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6666_CONTIG_1	10	+	1645	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	22	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8603_CONTIG_1	4	-	2165	5	full-splice_match	FGA	ENST00000403106	2248	5	37	46	multi-exon	FALSE	canonical	0	0	96	2	NA	1	0	FALSE	NA	NA	0	C	coding	644	1932	43	1974	50	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6952_CONTIG_1	15	+	2375	4	incomplete-splice_match	AQP9	ENST00000219919	3034	6	655	4	internal_fragment	FALSE	canonical	0	0	428	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	0	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_962_CONTIG_1	4	-	1468	10	full-splice_match	FGG	ENST00000404648	1760	10	193	99	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4874_CONTIG_1	16	+	1021	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	491	2	NA	0	0	TRUE	NA	NA	0	C	coding	159	477	28	504	5	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3007_CONTIG_1	4	+	1009	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	213	261	internal_fragment	FALSE	canonical	0	0	904	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	216	1007	25	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6247_CONTIG_1	9	+	764	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-4	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3349_CONTIG_1	4	+	1597	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	462	204	internal_fragment	FALSE	canonical	0	0	1480	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	66	1454	0	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3821_CONTIG_1	4	-	1040	6	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	111	2	NA	0	0	TRUE	NA	NA	0	C	coding	260	780	58	837	40	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3432_CONTIG_1	2	+	1180	6	full-splice_match	HNMT	ENST00000280097	3291	6	170	1941	multi-exon	FALSE	canonical	0	0	535	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_863_CONTIG_1	16	+	333	5	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	281	2	NA	1	1	TRUE	NA	NA	0	C	coding	101	303	31	333	30	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3642_CONTIG_1	2	+	369	4	full-splice_match	RPL31	ENST00000409320	716	4	0	347	multi-exon	FALSE	canonical	0	0	256	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	24	368	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2400_CONTIG_1	1	+	837	6	full-splice_match	C1orf162	ENST00000369718	915	6	111	-33	multi-exon	FALSE	canonical	0	0	314	2	NA	0	0	FALSE	NA	NA	0	A	coding	130	390	63	452	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5445_CONTIG_1	12	-	778	8	full-splice_match	NACA	ENST00000356769	2690	8	1907	5	multi-exon	FALSE	canonical	0	0	28	2	NA	0	0	FALSE	NA	NA	0	C	coding	215	645	31	675	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5120_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	452	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6665_CONTIG_1	7	-	1455	5	full-splice_match	NDUFA5	ENST00000355749	1901	5	437	9	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6351_CONTIG_1	X	+	2476	3	incomplete-splice_match	OGT	ENST00000373719	5461	22	2954	31	internal_fragment	FALSE	canonical	0	0	229	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.44	0.56	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6306_CONTIG_1	4	+	1971	15	full-splice_match	ALB	ENST00000295897	2263	15	50	242	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3992_CONTIG_1	3	+	568	2	full-splice_match	ABHD5	ENST00000486764	618	2	46	4	multi-exon	FALSE	canonical	0	0	102	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	80	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2147_CONTIG_1	14	-	516	4	novel_not_in_catalog	SERPINA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	43	2	NA	0	0	TRUE	NA	NA	0	C	coding	108	324	186	509	15	0.944	0.056	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2954_CONTIG_1	4	+	1235	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	244	4	internal_fragment	FALSE	canonical	0	0	1074	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	185	1048	35	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2448_CONTIG_1	9	-	800	7	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	180	540	92	631	10	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1765_CONTIG_1	4	-	1668	13	full-splice_match	GC	ENST00000273951	1972	13	284	20	multi-exon	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	61	1482	60	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7367_CONTIG_1	11	+	1984	14	full-splice_match	F2	ENST00000311907	2023	14	33	6	multi-exon	FALSE	canonical	0	0	1748	2	NA	0	0	FALSE	NA	NA	0	C	coding	622	1866	24	1889	20	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_632_CONTIG_1	6	-	1472	6	incomplete-splice_match	DST	ENST00000244364	16742	84	4536	10734	internal_fragment	FALSE	canonical	0	0	529	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.554	0.446	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1083_CONTIG_1	4	+	1682	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	382	199	internal_fragment	FALSE	canonical	0	0	1560	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	38	1534	10	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3932_CONTIG_1	14	-	1366	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	38	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5288_CONTIG_1	10	+	1669	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	-2	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8310_CONTIG_1	7	-	701	6	full-splice_match	RARRES2	ENST00000223271	740	6	39	0	multi-exon	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	79	567	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_968_CONTIG_1	8	-	464	5	full-splice_match	RPL30	ENST00000287038	543	5	45	34	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	71	415	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8185_CONTIG_1	X	+	2102	9	novel_in_catalog	NONO	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	885	2	NA	0	0	FALSE	NA	NA	0	B	coding	322	966	52	1017	15	0.676	0.324	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3124_CONTIG_1	19	-	1778	8	novel_not_in_catalog	EEF2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	86	2	NA	1	0	TRUE	NA	NA	0	B	coding	400	1200	84	1283	10	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8173_CONTIG_1	4	+	1735	7	incomplete-splice_match	AGPAT9	ENST00000264409	2625	12	887	3	internal_fragment	FALSE	canonical	0	0	530	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6469_CONTIG_1	9	-	1886	8	full-splice_match	PLIN2	ENST00000276914	1972	8	84	2	multi-exon	FALSE	canonical	0	0	74	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	97	1407	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1002_CONTIG_1	1	-	1487	2	genic_intron	novelGene_901	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	620	2	NA	1	0	FALSE	NA	NA	0	A	coding	99	297	378	674	45	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8159_CONTIG_1	4	+	1100	7	incomplete-splice_match	FGB	ENST00000302068	1975	8	59	816	3prime_fragment	FALSE	canonical	0	0	962	2	NA	0	0	FALSE	NA	NA	0	C	coding	365	1095	5	1099	40	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5494_CONTIG_1	4	+	1418	11	full-splice_match	ALB	ENST00000511370	1519	11	15	86	multi-exon	FALSE	canonical	0	0	1371	2	NA	2	0	FALSE	NA	NA	0	C	coding	288	864	482	1345	5	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6870_CONTIG_1	3	+	466	2	incomplete-splice_match	MCM2	ENST00000468414	1076	5	944	-334	internal_fragment	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4225_CONTIG_1	6	+	1674	15	incomplete-splice_match	CFB	ENST00000425368	2862	18	1130	58	internal_fragment	FALSE	canonical	0	0	1522	2	NA	0	0	FALSE	NA	NA	0	C	coding	541	1623	50	1672	20	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7661_CONTIG_1	4	+	1958	15	full-splice_match	ALB	ENST00000295897	2263	15	50	255	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3254_CONTIG_1	11	-	866	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	33	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3661_CONTIG_1	6	+	1359	9	novel_not_in_catalog	HLA-E	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1111	2	NA	0	0	TRUE	NA	NA	0	C	coding	358	1074	21	1094	75	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4305_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4458_CONTIG_1	1	-	1032	8	full-splice_match	FCN3	ENST00000270879	1030	8	0	-2	multi-exon	TRUE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	C	coding	299	897	7	903	20	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4784_CONTIG_1	4	+	313	2	incomplete-splice_match	FGB	ENST00000497097	574	3	-1	262	3prime_fragment	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	9	311	10	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2359_CONTIG_1	4	+	2031	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1895	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	60	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2795_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	50	157	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2659_CONTIG_1	6	+	972	9	full-splice_match	HSD17B8	ENST00000374662	990	9	13	5	multi-exon	FALSE	canonical	0	0	783	2	NA	0	0	FALSE	NA	NA	0	A	coding	261	783	15	797	5	0.246	0.754	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4806_CONTIG_1	4	+	281	2	incomplete-splice_match	ALB	ENST00000510166	532	4	193	58	internal_fragment	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1492_CONTIG_1	6	-	868	7	full-splice_match	GSTA2	ENST00000493422	1303	7	94	341	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8543_CONTIG_1	17	+	854	8	novel_in_catalog	SERPINF2	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	777	2	NA	0	0	FALSE	NA	NA	0	B	coding	178	534	321	854	25	0.696	0.304	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6345_CONTIG_1	1	+	755	3	novel_not_in_catalog	LMNA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	573	2	NA	1	0	TRUE	NA	NA	0	C	coding	182	546	209	754	5	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1692_CONTIG_1	12	-	1091	8	full-splice_match	RPLP0	ENST00000392514	1218	8	104	23	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	74	1024	30	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5694_CONTIG_1	11	-	2729	16	full-splice_match	ARFGAP2	ENST00000524782	2976	16	225	22	multi-exon	FALSE	canonical	0	0	76	2	NA	1	0	FALSE	NA	NA	0	C	coding	521	1563	5	1567	5	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5033_CONTIG_1	11	+	1662	13	novel_not_in_catalog	F2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1431	2	NA	1	0	TRUE	NA	NA	0	C	coding	445	1335	36	1370	25	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6633_CONTIG_1	4	+	1448	8	full-splice_match	FGB	ENST00000302068	1975	8	57	470	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	480	1440	7	1446	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5345_CONTIG_1	4	+	1578	8	full-splice_match	FGB	ENST00000302068	1975	8	54	343	multi-exon	FALSE	canonical	0	0	1253	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	10	1482	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4256_CONTIG_1	18	+	609	4	full-splice_match	TTR	ENST00000237014	957	4	153	195	multi-exon	FALSE	canonical	0	0	360	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	25	465	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8565_CONTIG_1	11	-	898	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	0	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6463_CONTIG_1	4	+	1354	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	184	-19	internal_fragment	FALSE	canonical	0	0	1202	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	313	1176	45	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6581_CONTIG_1	9	+	638	2	full-splice_match	C8G	ENST00000465773	457	2	-253	72	multi-exon	FALSE	canonical	0	0	386	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3791_CONTIG_1	16	+	543	3	fusion	RP11-249C24.11_MT1CP	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	315	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2298_CONTIG_1	4	+	1585	8	full-splice_match	FGB	ENST00000302068	1975	8	56	334	multi-exon	FALSE	canonical	0	0	1251	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_806_CONTIG_1	4	+	1394	9	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1063	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1968_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	50	165	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4657_CONTIG_1	19	-	291	2	incomplete-splice_match	CYP2A6	ENST00000301141	1764	9	4	1469	internal_fragment	FALSE	canonical	0	0	197	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6007_CONTIG_1	4	+	2000	15	full-splice_match	ALB	ENST00000295897	2263	15	48	215	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6885_CONTIG_1	9	-	380	5	incomplete-splice_match	AMBP	ENST00000466610	579	7	89	110	internal_fragment	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	84	252	128	379	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7796_CONTIG_1	1	-	1915	14	full-splice_match	CCT3	ENST00000295688	2150	14	226	9	multi-exon	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	coding	544	1632	59	1690	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_608_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	48	173	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5797_CONTIG_1	19	+	389	4	full-splice_match	APOC2	ENST00000252490	717	4	65	263	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	39	341	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1526_CONTIG_1	4	+	1969	15	full-splice_match	ALB	ENST00000295897	2263	15	50	244	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7584_CONTIG_1	1	+	2175	12	full-splice_match	CTH	ENST00000370938	1805	12	-4	-366	multi-exon	FALSE	canonical	0	0	1339	2	NA	1	0	FALSE	NA	NA	0	A	coding	405	1215	149	1363	55	0.428	0.572	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8341_CONTIG_1	1	-	2328	11	full-splice_match	ALDH9A1	ENST00000354775	2696	11	281	87	multi-exon	FALSE	canonical	0	0	205	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	97	1578	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6704_CONTIG_1	1	-	939	6	full-splice_match	PRDX1	ENST00000319248	1021	6	70	12	multi-exon	FALSE	canonical	0	0	58	2	NA	1	0	FALSE	NA	NA	0	C	coding	199	597	70	666	30	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4510_CONTIG_1	9	+	757	6	full-splice_match	ORM1	ENST00000259396	802	6	42	3	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6532_CONTIG_1	11	-	549	4	full-splice_match	SAA2	ENST00000256733	563	4	8	6	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7357_CONTIG_1	X	-	1537	2	incomplete-splice_match	ZDHHC9	ENST00000371064	2473	10	1222	-286	5prime_fragment	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.502	0.498	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1491_CONTIG_1	8	-	1414	5	novel_not_in_catalog	TRAPPC9	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	A	coding	211	633	64	696	5	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_909_CONTIG_1	14	-	765	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	-12	697	internal_fragment	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	239	717	47	763	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3020_CONTIG_1	9	-	421	5	incomplete-splice_match	PLIN2	ENST00000411567	1736	9	88	1227	internal_fragment	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	110	330	92	421	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3843_CONTIG_1	3	+	2308	17	full-splice_match	TF	ENST00000402696	2968	17	437	223	multi-exon	FALSE	canonical	0	0	2110	2	NA	1	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	40	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_649_CONTIG_1	4	-	1228	4	incomplete-splice_match	NAAA	ENST00000507956	1300	9	721	-649	5prime_fragment	FALSE	canonical	0	0	142	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2355_CONTIG_1	6	-	1036	4	novel_not_in_catalog	CUL7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	133	2	NA	0	0	TRUE	NA	NA	0	A	coding	120	360	40	399	25	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6195_CONTIG_1	20	-	1063	9	full-splice_match	DPM1	ENST00000371588	1075	9	18	-6	multi-exon	FALSE	canonical	0	0	170	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4165_CONTIG_1	16	+	1237	5	full-splice_match	HP	ENST00000398131	1252	5	14	1	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2602_CONTIG_1	11	-	1409	10	full-splice_match	EEF1G	ENST00000329251	1523	10	112	2	multi-exon	FALSE	canonical	0	0	31	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	20	1330	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8471_CONTIG_1	4	+	2037	15	full-splice_match	ALB	ENST00000295897	2263	15	48	178	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2388_CONTIG_1	10	+	1631	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	36	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6539_CONTIG_1	4	-	2063	6	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	111	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6897_CONTIG_1	19	+	843	4	full-splice_match	APOE	ENST00000252486	1208	4	44	321	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	258	774	68	841	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6457_CONTIG_1	4	-	1857	9	novel_in_catalog	FGG	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	148	444	1218	1661	35	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5116_CONTIG_1	4	+	1278	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	190	51	internal_fragment	FALSE	canonical	0	0	1196	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	307	1170	50	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6251_CONTIG_1	4	+	857	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	620	6	internal_fragment	FALSE	canonical	0	0	698	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	253	672	35	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7219_CONTIG_1	12	-	797	7	full-splice_match	PPP1R1A	ENST00000257905	1826	7	12	1017	multi-exon	FALSE	canonical	0	0	243	2	NA	0	0	FALSE	NA	NA	0	A	coding	171	513	160	672	10	0.21	0.79	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5174_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-15	443	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	50	1021	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4217_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	50	168	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_301_CONTIG_1	6	+	411	5	incomplete-splice_match	RPS12	ENST00000230050	631	6	128	92	3prime_fragment	FALSE	canonical	0	0	316	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1305_CONTIG_1	19	+	1919	7	novel_not_in_catalog	ANGPTL4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1205	2	NA	0	0	FALSE	NA	NA	0	C	coding	424	1272	167	1438	20	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5668_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-14	447	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	49	1017	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6037_CONTIG_1	4	+	835	5	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	720	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	3	833	20	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2186_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	48	172	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3705_CONTIG_1	1	+	866	2	full-splice_match	APCS	ENST00000255040	926	2	1	59	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	C	coding	223	669	97	765	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3869_CONTIG_1	20	+	1578	9	full-splice_match	RTFDC1	ENST00000023939	1650	9	36	36	multi-exon	FALSE	canonical	0	0	813	2	NA	1	0	FALSE	NA	NA	0	A	coding	306	918	72	989	40	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7376_CONTIG_1	4	-	1519	10	full-splice_match	FGG	ENST00000404648	1760	10	193	48	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4086_CONTIG_1	X	+	739	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1432	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8106_CONTIG_1	17	+	2050	9	novel_not_in_catalog	TRAF4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1746	2	NA	2	0	TRUE	NA	NA	0	A	coding	470	1410	103	1512	85	0.98	0.02	NEG	TRUE	Artifact
SAMPLE_1_MOLECULE_5580_CONTIG_1	4	+	1577	8	full-splice_match	FGB	ENST00000302068	1975	8	56	342	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1050_CONTIG_1	4	+	748	3	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	414	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6779_CONTIG_1	7	-	1239	9	full-splice_match	PON1	ENST00000222381	2568	9	218	1111	multi-exon	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7831_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_616_CONTIG_1	19	+	531	5	full-splice_match	UBA52	ENST00000442744	2845	5	0	2314	multi-exon	FALSE	canonical	0	0	351	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	59	442	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3054_CONTIG_1	4	+	2013	15	full-splice_match	ALB	ENST00000295897	2263	15	48	202	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5026_CONTIG_1	9	-	1760	9	novel_in_catalog	PLIN2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	104	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	184	1494	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6456_CONTIG_1	12	-	399	2	full-splice_match	UBC	ENST00000339647	2688	2	496	1793	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	110	330	69	398	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4982_CONTIG_1	4	+	1816	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	72	multi-exon	FALSE	canonical	0	0	1357	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3319_CONTIG_1	2	+	1191	8	full-splice_match	KHK	ENST00000260598	2397	8	400	806	multi-exon	FALSE	canonical	0	0	889	2	NA	0	0	FALSE	NA	NA	0	C	coding	298	894	79	972	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3226_CONTIG_1	10	-	917	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	160	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3582_CONTIG_1	1	+	1601	14	incomplete-splice_match	NDUFS2	ENST00000367993	2042	15	434	7	internal_fragment	FALSE	canonical	0	0	1368	2	NA	0	0	FALSE	NA	NA	0	A	coding	463	1389	15	1403	20	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4673_CONTIG_1	18	+	613	4	full-splice_match	TTR	ENST00000237014	957	4	151	193	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6353_CONTIG_1	4	+	1777	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	151	3prime_fragment	FALSE	canonical	0	0	1693	2	NA	0	0	FALSE	NA	NA	0	C	coding	578	1734	42	1775	30	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_136_CONTIG_1	14	-	1083	4	incomplete-splice_match	SERPINA1	ENST00000449399	1559	6	380	96	5prime_fragment	FALSE	canonical	0	0	568	2	NA	0	0	FALSE	NA	NA	0	C	coding	301	903	181	1083	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_372_CONTIG_1	17	+	364	2	full-splice_match	ANAPC11	ENST00000575195	1361	2	248	749	multi-exon	FALSE	canonical	0	0	41	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2955_CONTIG_1	4	+	2023	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1895	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	35	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8244_CONTIG_1	4	+	404	4	incomplete-splice_match	ALB	ENST00000415165	1483	11	1019	60	internal_fragment	FALSE	canonical	0	0	299	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1504_CONTIG_1	5	-	678	5	incomplete-splice_match	F12	ENST00000253496	2049	14	1192	179	5prime_fragment	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	62	186	493	678	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4135_CONTIG_1	4	-	1576	2	incomplete-splice_match	FGA	ENST00000403106	2248	5	570	102	5prime_fragment	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	coding	479	1437	5	1441	5	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_893_CONTIG_1	4	-	1543	10	full-splice_match	FGG	ENST00000404648	1760	10	193	24	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2861_CONTIG_1	8	-	1883	10	full-splice_match	CTSB	ENST00000353047	3875	10	142	1850	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	339	1017	113	1129	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3651_CONTIG_1	13	+	592	4	incomplete-splice_match	GTF3A	ENST00000419181	1191	8	-34	633	3prime_fragment	FALSE	canonical	0	0	509	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1666_CONTIG_1	12	+	458	2	incomplete-splice_match	GAPDH	ENST00000396859	1256	8	825	-27	internal_fragment	FALSE	canonical	0	0	192	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5092_CONTIG_1	4	+	1954	15	full-splice_match	ALB	ENST00000295897	2263	15	50	259	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7870_CONTIG_1	11	-	1421	10	incomplete-splice_match	EML3	ENST00000531557	2509	19	1075	13	5prime_fragment	FALSE	canonical	0	0	144	2	NA	0	0	FALSE	NA	NA	0	A	coding	174	522	655	1176	30	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8451_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	23	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8744_CONTIG_1	X	+	745	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1426	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1941_CONTIG_1	9	-	966	7	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	150	450	92	541	10	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1358_CONTIG_1	7	+	452	4	full-splice_match	NDUFB2	ENST00000247866	504	4	36	16	multi-exon	FALSE	canonical	0	0	384	2	NA	0	0	FALSE	NA	NA	0	A	coding	105	315	38	352	40	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5043_CONTIG_1	5	-	559	6	incomplete-splice_match	H2AFY	ENST00000304332	1881	9	426	896	internal_fragment	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.522	0.478	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_795_CONTIG_1	11	-	881	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	18	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6016_CONTIG_1	9	+	755	6	full-splice_match	ORM1	ENST00000259396	802	6	42	5	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6418_CONTIG_1	1	-	1649	12	full-splice_match	SELENBP1	ENST00000368868	1752	12	30	73	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	472	1416	63	1478	5	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1654_CONTIG_1	9	+	756	6	full-splice_match	ORM1	ENST00000259396	802	6	42	4	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3257_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	5	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5008_CONTIG_1	14	-	1374	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	30	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7112_CONTIG_1	17	-	503	4	full-splice_match	RPL26	ENST00000293842	524	4	0	21	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	43	477	60	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3832_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	48	169	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7989_CONTIG_1	16	+	1233	5	full-splice_match	HP	ENST00000398131	1252	5	17	2	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2078_CONTIG_1	4	+	1935	9	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1302	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3326_CONTIG_1	1	+	295	4	novel_not_in_catalog	RPL11	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	279	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4831_CONTIG_1	X	+	579	2	novel_not_in_catalog	EIF2S3	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	69	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	0	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5096_CONTIG_1	12	+	1100	3	full-splice_match	ERP29	ENST00000261735	1735	3	78	557	multi-exon	FALSE	canonical	0	0	355	2	NA	0	0	FALSE	NA	NA	0	C	coding	261	783	73	855	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8512_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	48	164	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4346_CONTIG_1	2	+	1098	5	full-splice_match	PTMA	ENST00000409115	1221	5	52	71	multi-exon	FALSE	canonical	0	0	431	2	NA	1	0	FALSE	NA	NA	0	C	coding	110	330	147	476	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8601_CONTIG_1	2	-	1089	4	full-splice_match	ADI1	ENST00000327435	2391	4	207	1095	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	43	579	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_759_CONTIG_1	3	+	1572	7	full-splice_match	AHSG	ENST00000411641	1711	7	137	2	multi-exon	FALSE	canonical	0	0	841	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	83	1183	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_202_CONTIG_1	16	+	1408	7	full-splice_match	HP	ENST00000355906	1443	7	31	4	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2408_CONTIG_1	4	-	1010	4	incomplete-splice_match	ADH4	ENST00000423445	1961	9	785	166	5prime_fragment	FALSE	canonical	0	0	115	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1619_CONTIG_1	14	+	1173	2	incomplete-splice_match	ZC3H14	ENST00000555851	502	5	346	-1017	internal_fragment	FALSE	canonical	0	0	17	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5803_CONTIG_1	4	+	2049	15	full-splice_match	ALB	ENST00000295897	2263	15	50	164	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3156_CONTIG_1	14	-	1015	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	442	multi-exon	FALSE	canonical	0	0	37	2	NA	1	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4375_CONTIG_1	4	+	2022	15	full-splice_match	ALB	ENST00000295897	2263	15	50	191	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4755_CONTIG_1	4	+	1059	8	incomplete-splice_match	ALB	ENST00000511370	1519	11	95	365	internal_fragment	FALSE	canonical	0	0	866	2	NA	0	0	FALSE	NA	NA	0	C	coding	219	657	402	1058	45	0.236	0.764	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4688_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2200_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	50	161	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8114_CONTIG_1	19	+	866	4	full-splice_match	FTL	ENST00000331825	878	4	8	4	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8113_CONTIG_1	19	-	1336	8	incomplete-splice_match	CYP2A6	ENST00000301141	1764	9	351	77	5prime_fragment	FALSE	canonical	0	0	13	2	NA	0	0	FALSE	NA	NA	0	C	coding	291	873	280	1152	35	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2055_CONTIG_1	9	-	1333	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	1069	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	60	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_305_CONTIG_1	9	+	758	6	full-splice_match	ORM1	ENST00000259396	802	6	42	2	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_556_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	447	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4356_CONTIG_1	19	-	2139	6	novel_not_in_catalog	FBXO27	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	121	2	NA	1	0	FALSE	NA	NA	0	A	coding	156	468	27	494	45	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8686_CONTIG_1	11	+	1367	12	novel_not_in_catalog	F2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1138	2	NA	0	0	TRUE	NA	NA	0	C	coding	375	1125	9	1133	25	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7820_CONTIG_1	5	-	1381	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	675	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1402_CONTIG_1	4	+	379	5	incomplete-splice_match	TDO2	ENST00000536354	1701	12	841	481	internal_fragment	FALSE	canonical	0	0	290	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6380_CONTIG_1	7	-	1033	9	full-splice_match	PON3	ENST00000265627	1105	9	-24	96	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	332	996	36	1031	30	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4103_CONTIG_1	4	+	1913	15	full-splice_match	ALB	ENST00000295897	2263	15	50	300	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4076_CONTIG_1	3	+	1369	2	incomplete-splice_match	KNG1	ENST00000265023	3435	10	1313	753	internal_fragment	FALSE	canonical	0	0	24	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8161_CONTIG_1	19	+	1282	4	full-splice_match	GADD45B	ENST00000215631	1373	4	0	91	multi-exon	FALSE	canonical	0	0	601	2	NA	0	0	FALSE	NA	NA	0	C	coding	160	480	233	712	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5862_CONTIG_1	1	-	2012	12	full-splice_match	C8B	ENST00000371237	2037	12	0	25	multi-exon	FALSE	canonical	0	0	159	2	NA	1	0	FALSE	NA	NA	0	C	coding	591	1773	68	1840	50	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2174_CONTIG_1	3	+	1910	14	incomplete-splice_match	TF	ENST00000264998	2143	16	216	17	internal_fragment	FALSE	canonical	0	0	1721	2	NA	0	0	FALSE	NA	NA	0	C	coding	571	1713	41	1753	35	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_543_CONTIG_1	1	-	1773	12	incomplete-splice_match	CCT3	ENST00000368258	1885	13	113	-1	5prime_fragment	FALSE	canonical	0	0	48	2	NA	0	0	FALSE	NA	NA	0	C	coding	500	1500	40	1539	20	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1454_CONTIG_1	4	-	1440	9	full-splice_match	ADH1C	ENST00000515683	1740	9	281	19	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	699	1196	25	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1610_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5959_CONTIG_1	19	-	1411	3	full-splice_match	SLC39A3	ENST00000269740	1502	3	88	3	multi-exon	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	C	coding	314	942	243	1184	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3611_CONTIG_1	14	+	1575	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	13	1	multi-exon	FALSE	canonical	0	0	1134	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	67	1335	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2497_CONTIG_1	10	+	1803	9	full-splice_match	VIM	ENST00000224237	1868	9	0	65	multi-exon	FALSE	canonical	0	0	1504	2	NA	1	0	FALSE	NA	NA	0	A	coding	466	1398	146	1543	15	0.39	0.61	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3589_CONTIG_1	10	-	1524	7	full-splice_match	PRDX3	ENST00000298510	1584	7	23	37	multi-exon	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.338	0.662	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4431_CONTIG_1	3	+	2433	16	novel_not_in_catalog	SLC38A3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1537	2	NA	0	0	FALSE	NA	NA	0	B	coding	504	1512	128	1639	25	0.914	0.086	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5320_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7022_CONTIG_1	X	+	742	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1429	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_991_CONTIG_1	9	-	1460	6	incomplete-splice_match	EPB41L4B	ENST00000374557	4006	16	1666	880	5prime_fragment	FALSE	canonical	0	0	21	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.214	0.786	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6352_CONTIG_1	10	+	1213	9	full-splice_match	AKR1C1	ENST00000380872	6705	9	161	5331	multi-exon	FALSE	canonical	0	0	960	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	32	1000	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_738_CONTIG_1	16	+	1098	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1053	2	NA	0	0	TRUE	NA	NA	0	C	coding	357	1071	28	1098	5	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5918_CONTIG_1	11	-	1024	3	full-splice_match	EIF4G2	ENST00000525606	690	3	271	-605	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5940_CONTIG_1	4	+	1422	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1101	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8422_CONTIG_1	4	+	277	3	incomplete-splice_match	ALB	ENST00000515133	665	4	2	386	3prime_fragment	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_774_CONTIG_1	5	-	1411	6	full-splice_match	CMBL	ENST00000296658	2335	6	256	668	multi-exon	FALSE	canonical	0	0	146	2	NA	0	0	FALSE	NA	NA	0	C	coding	245	735	166	900	70	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6699_CONTIG_1	10	-	917	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	160	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7618_CONTIG_1	9	-	1295	9	novel_not_in_catalog	ALDOB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	66	2	NA	0	0	TRUE	NA	NA	0	C	coding	267	801	77	877	35	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7575_CONTIG_1	4	+	2001	15	full-splice_match	ALB	ENST00000295897	2263	15	48	214	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8118_CONTIG_1	11	+	1979	14	full-splice_match	F2	ENST00000311907	2023	14	33	11	multi-exon	FALSE	canonical	0	0	1748	2	NA	0	0	FALSE	NA	NA	0	C	coding	622	1866	24	1889	25	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5799_CONTIG_1	6	+	1275	5	incomplete-splice_match	HSP90AB1	ENST00000371646	2569	12	1269	25	internal_fragment	FALSE	canonical	0	0	905	2	NA	0	0	FALSE	NA	NA	0	B	coding	331	993	20	1012	35	0.586	0.414	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4524_CONTIG_1	16	+	1429	8	novel_not_in_catalog	PDXDC1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	938	2	NA	1	0	TRUE	NA	NA	0	B	coding	189	567	71	637	65	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6086_CONTIG_1	X	-	2030	8	full-splice_match	TSPAN6	ENST00000373020	2206	8	0	176	multi-exon	FALSE	canonical	0	0	199	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5152_CONTIG_1	4	-	1674	13	full-splice_match	GC	ENST00000273951	1972	13	286	12	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8143_CONTIG_1	4	+	1984	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1835	2	NA	1	0	TRUE	NA	NA	0	C	coding	590	1770	40	1809	55	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3527_CONTIG_1	1	+	941	2	full-splice_match	ELF3	ENST00000475698	833	2	99	-207	multi-exon	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6183_CONTIG_1	9	-	1587	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	815	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8269_CONTIG_1	4	+	1234	10	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1105	2	NA	1	1	TRUE	NA	NA	0	C	coding	397	1191	42	1232	20	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_164_CONTIG_1	4	-	1561	10	full-splice_match	FGG	ENST00000404648	1760	10	193	6	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1773_CONTIG_1	4	+	1584	8	full-splice_match	FGB	ENST00000302068	1975	8	55	336	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3386_CONTIG_1	1	-	1330	3	genic_intron	novelGene_558	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	28	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4622_CONTIG_1	15	-	1818	7	incomplete-splice_match	GATM	ENST00000396659	2597	9	642	137	5prime_fragment	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5136_CONTIG_1	6	+	301	4	incomplete-splice_match	C4A	ENST00000469975	830	6	197	332	internal_fragment	FALSE	canonical	0	0	234	2	NA	0	0	FALSE	NA	NA	0	A	coding	62	186	114	299	35	0.214	0.786	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_351_CONTIG_1	7	-	1067	7	full-splice_match	TMEM176B	ENST00000326442	1129	7	37	25	multi-exon	FALSE	canonical	0	0	30	2	NA	1	0	FALSE	NA	NA	0	C	coding	270	810	36	845	30	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6379_CONTIG_1	7	-	1821	5	incomplete-splice_match	CYP3A5	ENST00000469887	3149	12	1280	48	5prime_fragment	FALSE	canonical	0	0	1118	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4749_CONTIG_1	3	-	1651	14	full-splice_match	HGD	ENST00000283871	2005	14	332	22	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	C	coding	445	1335	129	1463	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1625_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_107_CONTIG_1	4	+	1857	8	full-splice_match	FGB	ENST00000302068	1975	8	57	61	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_578_CONTIG_1	16	+	925	6	full-splice_match	RPL13	ENST00000311528	2211	6	25	1261	multi-exon	FALSE	canonical	0	0	528	2	NA	1	0	FALSE	NA	NA	0	C	coding	211	633	52	684	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2623_CONTIG_1	17	-	1518	8	full-splice_match	VTN	ENST00000226218	2149	8	515	116	multi-exon	FALSE	canonical	0	0	168	2	NA	1	0	FALSE	NA	NA	0	C	coding	471	1413	105	1517	10	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4500_CONTIG_1	4	+	1695	7	full-splice_match	TMA16	ENST00000358572	1978	7	262	21	multi-exon	FALSE	canonical	0	0	510	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8145_CONTIG_1	12	+	727	4	full-splice_match	MGST1	ENST00000396210	914	4	3	184	multi-exon	FALSE	canonical	0	0	302	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_228_CONTIG_1	4	+	1669	14	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1507	2	NA	1	0	TRUE	NA	NA	0	C	coding	282	846	40	885	35	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5162_CONTIG_1	4	+	1331	10	novel_in_catalog	ALB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	430	1290	42	1331	30	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7124_CONTIG_1	3	+	878	4	full-splice_match	RPL15	ENST00000307839	2730	4	603	1249	multi-exon	FALSE	canonical	0	0	345	2	NA	1	0	FALSE	NA	NA	0	C	coding	204	612	37	648	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6810_CONTIG_1	14	+	1007	4	incomplete-splice_match	SERPINA4	ENST00000298841	1784	5	798	-21	internal_fragment	FALSE	canonical	0	0	510	2	NA	2	0	FALSE	NA	NA	0	C	coding	221	663	46	708	35	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8081_CONTIG_1	11	-	873	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	26	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2998_CONTIG_1	3	+	1297	7	full-splice_match	AHSG	ENST00000411641	1711	7	408	6	multi-exon	FALSE	canonical	0	0	570	2	NA	0	0	FALSE	NA	NA	0	C	coding	120	360	553	912	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1303_CONTIG_1	7	+	1477	4	full-splice_match	IGFBP1	ENST00000275525	1653	4	134	42	multi-exon	FALSE	canonical	0	0	810	2	NA	0	0	FALSE	NA	NA	0	C	coding	259	777	163	939	50	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_267_CONTIG_1	8	-	1826	10	novel_not_in_catalog	CTSB	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	87	2	NA	0	0	TRUE	NA	NA	0	C	coding	272	816	113	928	40	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3669_CONTIG_1	18	+	613	4	full-splice_match	TTR	ENST00000237014	957	4	151	193	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8335_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3030_CONTIG_1	17	-	806	8	novel_not_in_catalog	SPAG7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	94	2	NA	0	0	TRUE	NA	NA	0	A	coding	229	687	10	696	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_891_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_313_CONTIG_1	19	+	495	4	full-splice_match	APOC2	ENST00000252490	717	4	65	157	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	39	341	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2654_CONTIG_1	1	-	1303	5	novel_not_in_catalog	HMGCS2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	169	2	NA	1	0	TRUE	NA	NA	0	C	coding	294	882	66	947	50	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1162_CONTIG_1	2	+	1738	9	full-splice_match	CYP27A1	ENST00000258415	2286	9	537	11	multi-exon	FALSE	canonical	0	0	1366	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	173	1483	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8361_CONTIG_1	4	+	1992	15	full-splice_match	ALB	ENST00000295897	2263	15	50	221	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_250_CONTIG_1	16	-	2279	16	novel_not_in_catalog	NPRL3	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	33	2	NA	1	0	FALSE	NA	NA	0	A	coding	474	1422	472	1893	45	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2027_CONTIG_1	9	-	1188	10	full-splice_match	PTGR1	ENST00000407693	1407	10	206	13	multi-exon	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	coding	329	987	58	1044	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7897_CONTIG_1	16	+	337	3	full-splice_match	MT2A	ENST00000245185	786	3	385	64	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1733_CONTIG_1	4	-	1021	6	incomplete-splice_match	FGG	ENST00000404648	1760	10	710	29	5prime_fragment	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	148	444	398	841	25	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5601_CONTIG_1	13	-	1653	3	full-splice_match	TSC22D1	ENST00000261489	1749	3	-14	110	multi-exon	FALSE	canonical	0	0	356	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	262	663	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4621_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6497_CONTIG_1	14	+	899	6	incomplete-splice_match	KLHDC2	ENST00000557247	1565	11	-19	685	3prime_fragment	FALSE	canonical	0	0	869	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2278_CONTIG_1	7	+	927	3	incomplete-splice_match	IGFBP1	ENST00000275525	1653	4	718	8	internal_fragment	FALSE	canonical	0	0	226	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8067_CONTIG_1	11	-	2090	4	novel_in_catalog	SLC22A25	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	506	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7250_CONTIG_1	15	-	1286	12	incomplete-splice_match	ANXA2	ENST00000451270	1435	13	101	48	5prime_fragment	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	A	coding	339	1017	12	1028	40	0.234	0.766	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1858_CONTIG_1	11	-	1326	3	full-splice_match	APOA5	ENST00000227665	1897	3	24	547	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	coding	363	1089	21	1109	20	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7887_CONTIG_1	6	-	2101	11	novel_in_catalog	MAP3K5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	179	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1052_CONTIG_1	4	+	1982	15	full-splice_match	ALB	ENST00000295897	2263	15	53	228	multi-exon	FALSE	canonical	0	0	1889	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	37	1863	45	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_832_CONTIG_1	1	-	1814	5	full-splice_match	AGT	ENST00000366667	2291	5	173	304	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	485	1455	43	1497	20	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3565_CONTIG_1	11	+	1494	7	novel_not_in_catalog	RPS3	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1406	2	NA	0	0	TRUE	NA	NA	0	C	coding	117	351	313	663	25	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4642_CONTIG_1	1	+	1274	10	novel_in_catalog	AKR1A1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1141	2	NA	0	0	FALSE	NA	NA	0	A	coding	325	975	230	1204	40	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6281_CONTIG_1	10	-	1525	4	full-splice_match	KLF6	ENST00000497571	4656	4	66	3065	multi-exon	FALSE	canonical	0	0	297	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	196	1044	80	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6856_CONTIG_1	4	-	1976	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	677	-986	5prime_fragment	FALSE	canonical	0	0	82	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5812_CONTIG_1	4	-	1515	10	full-splice_match	FGG	ENST00000404648	1760	10	193	52	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6834_CONTIG_1	10	-	923	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	154	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7242_CONTIG_1	10	-	1274	8	full-splice_match	ECHS1	ENST00000368547	1617	8	335	8	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	290	870	22	891	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4039_CONTIG_1	18	+	589	4	full-splice_match	TTR	ENST00000237014	957	4	153	215	multi-exon	FALSE	canonical	0	0	360	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	25	465	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8632_CONTIG_1	13	+	1239	4	incomplete-splice_match	MBNL2	ENST00000469707	2574	11	217	1118	internal_fragment	FALSE	canonical	0	0	1104	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.536	0.464	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5298_CONTIG_1	12	+	889	5	full-splice_match	PXMP2	ENST00000317479	957	5	53	15	multi-exon	FALSE	canonical	0	0	531	2	NA	0	0	FALSE	NA	NA	0	A	coding	195	585	13	597	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8368_CONTIG_1	11	-	342	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	557	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	39	341	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6728_CONTIG_1	16	+	1228	5	full-splice_match	HP	ENST00000398131	1252	5	17	7	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1292_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	1	1	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5536_CONTIG_1	2	+	1144	8	full-splice_match	KHK	ENST00000260599	2411	8	479	788	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	298	894	35	928	20	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7594_CONTIG_1	6	-	888	5	full-splice_match	MPC1	ENST00000360961	962	5	61	13	multi-exon	FALSE	canonical	0	0	132	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2635_CONTIG_1	1	+	338	3	full-splice_match	MRPS21	ENST00000309092	1078	3	12	728	multi-exon	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1419_CONTIG_1	10	-	1972	10	full-splice_match	OAT	ENST00000368845	2048	10	13	63	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.256	0.744	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7303_CONTIG_1	5	-	2037	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	19	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_125_CONTIG_1	16	-	976	7	incomplete-splice_match	CES1	ENST00000422046	2178	14	1204	-2	5prime_fragment	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	241	723	54	776	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7533_CONTIG_1	4	+	1633	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1616	2	NA	1	0	TRUE	NA	NA	0	C	coding	517	1551	40	1590	65	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7452_CONTIG_1	2	+	1047	4	full-splice_match	NEU4	ENST00000407683	2273	4	368	858	multi-exon	TRUE	canonical	0	0	542	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	86	1045	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5319_CONTIG_1	10	-	920	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	157	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1126_CONTIG_1	6	+	1099	6	novel_not_in_catalog	TRMT11	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	880	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_58_CONTIG_1	4	+	1979	15	full-splice_match	ALB	ENST00000295897	2263	15	48	236	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3813_CONTIG_1	16	+	1115	3	full-splice_match	HP	ENST00000566821	3024	3	1909	0	multi-exon	FALSE	canonical	0	0	172	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	265	948	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5101_CONTIG_1	18	+	614	4	full-splice_match	TTR	ENST00000237014	957	4	151	192	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1695_CONTIG_1	4	+	1693	12	full-splice_match	TDO2	ENST00000536354	1701	12	-3	11	multi-exon	FALSE	canonical	0	0	1134	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7385_CONTIG_1	2	+	477	4	full-splice_match	COX5B	ENST00000258424	712	4	40	195	multi-exon	FALSE	canonical	0	0	284	2	NA	0	0	FALSE	NA	NA	0	C	coding	129	387	8	394	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1960_CONTIG_1	19	-	1565	8	novel_not_in_catalog	CYP2A6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	C	coding	443	1329	22	1350	40	0.37	0.63	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3637_CONTIG_1	4	+	1702	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	359	202	internal_fragment	FALSE	canonical	0	0	1583	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	61	1557	5	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8708_CONTIG_1	19	+	1166	4	full-splice_match	APOE	ENST00000252486	1208	4	42	0	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	0	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2733_CONTIG_1	11	-	873	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	26	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4594_CONTIG_1	16	+	1020	3	full-splice_match	HP	ENST00000566821	3024	3	1902	102	multi-exon	FALSE	canonical	0	0	179	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	272	955	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8492_CONTIG_1	8	+	841	6	novel_not_in_catalog	RDH10	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	744	2	NA	2	0	FALSE	NA	NA	0	A	coding	129	387	392	778	40	0.278	0.722	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6400_CONTIG_1	3	+	1829	14	incomplete-splice_match	TF	ENST00000264998	2143	16	271	43	internal_fragment	FALSE	canonical	0	0	1666	2	NA	1	0	FALSE	NA	NA	0	C	coding	424	1272	427	1698	55	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5466_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	50	161	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6978_CONTIG_1	19	+	870	4	full-splice_match	FTL	ENST00000331825	878	4	8	0	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2058_CONTIG_1	17	-	1445	3	novel_in_catalog	MPP3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1249	2	NA	0	0	FALSE	NA	NA	0	A	coding	160	480	964	1443	20	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_836_CONTIG_1	11	-	842	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	57	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	0	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5176_CONTIG_1	16	+	1233	5	full-splice_match	HP	ENST00000398131	1252	5	17	2	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3864_CONTIG_1	16	+	1196	5	full-splice_match	HP	ENST00000398131	1252	5	17	39	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7576_CONTIG_1	9	+	761	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	20	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8124_CONTIG_1	15	+	429	5	incomplete-splice_match	CYFIP1	ENST00000561020	3471	10	2019	1023	internal_fragment	FALSE	canonical	0	0	338	2	NA	0	0	FALSE	NA	NA	0	A	coding	54	162	267	428	15	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2303_CONTIG_1	4	+	2019	15	full-splice_match	ALB	ENST00000295897	2263	15	49	195	multi-exon	FALSE	canonical	0	0	1893	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1593_CONTIG_1	4	+	380	3	incomplete-splice_match	ALB	ENST00000505649	1509	11	345	784	internal_fragment	FALSE	canonical	0	0	184	2	NA	0	0	FALSE	NA	NA	0	C	coding	25	75	305	379	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6327_CONTIG_1	9	+	756	6	full-splice_match	ORM1	ENST00000259396	802	6	42	4	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4136_CONTIG_1	12	-	789	2	incomplete-splice_match	LPCAT3	ENST00000535021	802	7	616	-603	5prime_fragment	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3751_CONTIG_1	16	+	1233	5	full-splice_match	HP	ENST00000398131	1252	5	17	2	multi-exon	FALSE	canonical	0	0	292	2	NA	2	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8080_CONTIG_1	4	-	1116	12	full-splice_match	PPA2	ENST00000341695	1684	12	13	555	multi-exon	FALSE	canonical	0	0	175	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_787_CONTIG_1	4	+	2020	15	full-splice_match	ALB	ENST00000295897	2263	15	50	193	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_548_CONTIG_1	4	+	818	6	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	717	2	NA	0	0	TRUE	NA	NA	0	C	coding	35	105	252	356	20	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8657_CONTIG_1	1	+	792	8	novel_not_in_catalog	YBX1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	753	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1389_CONTIG_1	19	-	1005	6	full-splice_match	GAMT	ENST00000252288	1045	6	33	7	multi-exon	FALSE	canonical	0	0	215	2	NA	0	0	FALSE	NA	NA	0	A	coding	236	708	35	742	15	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6688_CONTIG_1	9	+	716	6	full-splice_match	ORM1	ENST00000259396	802	6	45	41	multi-exon	FALSE	canonical	0	0	573	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	34	636	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6783_CONTIG_1	4	+	1911	8	full-splice_match	FGB	ENST00000302068	1975	8	59	5	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1982_CONTIG_1	9	-	2593	4	novel_not_in_catalog	TMEM2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	226	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.428	0.572	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4958_CONTIG_1	19	+	385	4	full-splice_match	APOC1	ENST00000252491	461	4	44	32	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1598_CONTIG_1	4	+	1027	5	incomplete-splice_match	FGB	ENST00000509493	1164	6	165	-28	internal_fragment	FALSE	canonical	0	0	696	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6172_CONTIG_1	17	-	1072	3	antisense	novelGene_SERPINF2_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	420	2	NA	0	0	FALSE	NA	NA	0	A	coding	135	405	137	541	45	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4155_CONTIG_1	11	-	838	5	full-splice_match	LAMTOR1	ENST00000278671	1179	5	140	201	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	161	483	24	506	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7621_CONTIG_1	19	-	1352	5	full-splice_match	SMIM7	ENST00000487416	2776	5	13	1411	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2307_CONTIG_1	6	+	1351	6	full-splice_match	AIG1	ENST00000357847	1395	6	35	9	multi-exon	FALSE	canonical	0	0	694	2	NA	1	0	FALSE	NA	NA	0	C	coding	238	714	16	729	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2280_CONTIG_1	12	+	1962	13	full-splice_match	ALDH2	ENST00000261733	2018	13	43	13	multi-exon	FALSE	canonical	0	0	1539	2	NA	0	0	FALSE	NA	NA	0	C	coding	517	1551	19	1569	25	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5410_CONTIG_1	9	-	2097	13	full-splice_match	ALDH1A1	ENST00000297785	2107	13	-3	13	multi-exon	FALSE	canonical	0	0	124	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6299_CONTIG_1	4	-	1295	10	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	125	2	NA	0	0	TRUE	NA	NA	0	C	coding	148	444	731	1174	30	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3617_CONTIG_1	11	-	593	3	incomplete-splice_match	SIGIRR	ENST00000527987	803	4	162	48	5prime_fragment	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	A	coding	80	240	231	470	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4641_CONTIG_1	15	-	1422	10	full-splice_match	RPL4	ENST00000307961	2767	10	41	1304	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	53	1333	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8249_CONTIG_1	X	-	331	2	novel_in_catalog	AIFM1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	187	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_72_CONTIG_1	9	+	1460	15	full-splice_match	ASS1	ENST00000352480	1564	15	33	71	multi-exon	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	40	1275	10	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_508_CONTIG_1	4	+	1713	12	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1561	2	NA	0	0	TRUE	NA	NA	0	C	coding	288	864	672	1535	45	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5143_CONTIG_1	4	+	1419	11	full-splice_match	ALB	ENST00000511370	1519	11	124	-24	multi-exon	FALSE	canonical	0	0	1262	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	373	1236	40	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2110_CONTIG_1	2	+	1336	5	full-splice_match	PLGLB2	ENST00000410086	522	5	-5	-809	multi-exon	TRUE	canonical	0	0	466	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1916_CONTIG_1	4	-	1530	10	full-splice_match	FGG	ENST00000404648	1760	10	193	37	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1820_CONTIG_1	19	-	902	6	novel_in_catalog	CDC37	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	A	coding	251	753	6	758	10	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5437_CONTIG_1	X	-	1633	15	full-splice_match	ACOT9	ENST00000336430	1675	15	30	12	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	A	coding	439	1317	103	1419	40	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4706_CONTIG_1	3	-	530	6	full-splice_match	RPL24	ENST00000394077	623	6	86	7	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	A	coding	157	471	21	491	20	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3833_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8486_CONTIG_1	6	-	1733	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	558	12	multi-exon	FALSE	canonical	0	0	31	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	62	1447	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2273_CONTIG_1	12	+	898	5	genic	ERP29	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	201	2	NA	2	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	100	0.982	0.018	NEG	TRUE	Artifact
SAMPLE_1_MOLECULE_1939_CONTIG_1	7	-	587	5	incomplete-splice_match	RARRES2	ENST00000223271	740	6	32	121	internal_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	86	574	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5452_CONTIG_1	4	-	1561	10	full-splice_match	FGG	ENST00000404648	1760	10	193	6	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_719_CONTIG_1	17	-	614	3	full-splice_match	P4HB	ENST00000571507	493	3	154	-275	multi-exon	FALSE	canonical	0	0	108	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3115_CONTIG_1	19	-	1521	9	incomplete-splice_match	SLC27A5	ENST00000601355	1987	10	499	-33	5prime_fragment	FALSE	canonical	0	0	184	2	NA	0	0	FALSE	NA	NA	0	C	coding	376	1128	229	1356	35	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_227_CONTIG_1	4	-	1015	6	novel_in_catalog	ADH1A	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	314	942	72	1013	15	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_789_CONTIG_1	19	+	1028	2	incomplete-splice_match	APOE	ENST00000252486	1208	4	179	1	internal_fragment	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	236	708	176	883	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1185_CONTIG_1	14	-	1669	16	novel_not_in_catalog	ERO1L	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	202	2	NA	2	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.94	0.06	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_542_CONTIG_1	14	+	925	7	incomplete-splice_match	EIF5	ENST00000216554	5945	12	236	4784	3prime_fragment	FALSE	canonical	0	0	879	2	NA	2	0	FALSE	NA	NA	0	B	coding	161	483	441	923	50	0.61	0.39	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2175_CONTIG_1	5	+	634	2	full-splice_match	HIGD2A	ENST00000274787	668	2	13	21	multi-exon	FALSE	canonical	0	0	214	2	NA	0	0	FALSE	NA	NA	0	A	coding	106	318	61	378	25	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1853_CONTIG_1	18	-	1775	12	full-splice_match	ATP5A1	ENST00000398752	1916	12	57	84	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	553	1659	66	1724	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_526_CONTIG_1	14	-	1018	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	445	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_437_CONTIG_1	9	+	760	6	full-splice_match	ORM1	ENST00000259396	802	6	42	0	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4996_CONTIG_1	12	-	955	3	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	1	0	TRUE	NA	NA	0	C	coding	176	528	200	727	10	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1329_CONTIG_1	2	-	1052	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	1134	multi-exon	FALSE	canonical	0	0	164	2	NA	1	0	FALSE	NA	NA	0	C	coding	179	537	45	581	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7270_CONTIG_1	7	-	1161	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	20	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7928_CONTIG_1	3	+	2298	17	full-splice_match	TF	ENST00000402696	2968	17	436	234	multi-exon	FALSE	canonical	0	0	2111	2	NA	1	0	FALSE	NA	NA	0	C	coding	698	2094	50	2143	30	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7615_CONTIG_1	11	-	513	6	full-splice_match	RPS13	ENST00000525634	646	6	120	13	multi-exon	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	C	coding	151	453	27	479	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6019_CONTIG_1	4	-	822	5	incomplete-splice_match	FGG	ENST00000405164	1539	10	675	42	5prime_fragment	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	C	coding	148	444	251	694	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3373_CONTIG_1	10	+	1598	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	69	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7832_CONTIG_1	12	+	1803	4	full-splice_match	GABARAPL1	ENST00000266458	1955	4	103	49	multi-exon	FALSE	canonical	0	0	510	2	NA	1	0	FALSE	NA	NA	0	A	coding	117	351	223	573	35	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2150_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8491_CONTIG_1	10	-	887	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	190	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6313_CONTIG_1	7	-	1668	2	antisense	novelGene_GALNT11_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	539	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6909_CONTIG_1	5	+	1349	12	incomplete-splice_match	TNPO1	ENST00000506351	3028	25	-63	1742	3prime_fragment	FALSE	canonical	0	0	1266	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7069_CONTIG_1	9	-	707	3	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	900	844	5prime_fragment	FALSE	canonical	0	0	24	2	NA	0	0	FALSE	NA	NA	0	C	coding	90	270	48	317	50	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8037_CONTIG_1	4	+	1700	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	12	175	multi-exon	FALSE	canonical	0	0	1344	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5614_CONTIG_1	22	-	1565	12	full-splice_match	ST13	ENST00000216218	3595	12	397	1633	multi-exon	FALSE	canonical	0	0	195	2	NA	1	0	FALSE	NA	NA	0	C	coding	332	996	197	1192	45	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4321_CONTIG_1	1	-	499	2	genic_intron	novelGene_6	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	147	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2579_CONTIG_1	15	+	946	4	full-splice_match	B2M	ENST00000558401	1715	4	36	733	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3438_CONTIG_1	4	-	1571	9	full-splice_match	ADH4	ENST00000265512	1993	9	-80	502	multi-exon	FALSE	canonical	0	0	173	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4317_CONTIG_1	4	+	2035	15	full-splice_match	ALB	ENST00000295897	2263	15	50	178	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_470_CONTIG_1	14	-	1015	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	448	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_518_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_980_CONTIG_1	4	+	1529	8	full-splice_match	FGB	ENST00000302068	1975	8	55	391	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6001_CONTIG_1	4	+	2021	15	full-splice_match	ALB	ENST00000295897	2263	15	50	192	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_798_CONTIG_1	11	+	930	3	full-splice_match	NNMT	ENST00000299964	1610	3	627	53	multi-exon	FALSE	canonical	0	0	467	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	106	897	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6340_CONTIG_1	4	-	2194	5	full-splice_match	FGA	ENST00000403106	2248	5	24	30	multi-exon	FALSE	canonical	0	0	109	2	NA	1	0	FALSE	NA	NA	0	C	coding	644	1932	56	1987	40	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7122_CONTIG_1	X	+	1261	5	incomplete-splice_match	AR	ENST00000396043	1728	8	440	27	internal_fragment	FALSE	canonical	0	0	685	2	NA	0	0	FALSE	NA	NA	0	B	coding	186	558	281	838	75	0.59	0.41	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5185_CONTIG_1	4	-	302	3	incomplete-splice_match	FGA	ENST00000403106	2248	5	22	1924	internal_fragment	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	81	243	58	300	60	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3530_CONTIG_1	4	+	1121	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	339	23	internal_fragment	FALSE	canonical	0	0	979	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	90	953	65	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5055_CONTIG_1	4	+	852	6	incomplete-splice_match	FGB	ENST00000502545	1320	7	-21	489	3prime_fragment	FALSE	canonical	0	0	834	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	3	851	25	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2068_CONTIG_1	17	-	1245	5	full-splice_match	P4HB	ENST00000476482	765	5	171	-651	multi-exon	FALSE	canonical	0	0	72	2	NA	1	0	FALSE	NA	NA	0	C	coding	153	459	82	540	35	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3485_CONTIG_1	1	-	1080	7	incomplete-splice_match	C8B	ENST00000371237	2037	12	0	957	internal_fragment	FALSE	canonical	0	0	159	2	NA	0	0	FALSE	NA	NA	0	C	coding	337	1011	68	1078	25	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1135_CONTIG_1	4	+	1479	11	full-splice_match	ALB	ENST00000511370	1519	11	67	-27	multi-exon	FALSE	canonical	0	0	1319	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	430	1293	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7301_CONTIG_1	12	-	1006	7	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	100	2	NA	1	0	TRUE	NA	NA	0	C	coding	105	315	691	1005	10	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7193_CONTIG_1	8	-	944	6	full-splice_match	HRSP12	ENST00000254878	1057	6	70	43	multi-exon	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2007_CONTIG_1	9	-	972	7	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	374	1105	5prime_fragment	FALSE	canonical	0	0	75	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	448	843	40	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5439_CONTIG_1	7	-	1515	12	novel_not_in_catalog	CYP3A4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6137_CONTIG_1	4	+	703	6	incomplete-splice_match	ALB	ENST00000505649	1509	11	130	676	internal_fragment	FALSE	canonical	0	0	614	2	NA	0	0	FALSE	NA	NA	0	C	coding	61	183	520	702	15	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_474_CONTIG_1	1	+	1450	2	novel_not_in_catalog	HIST2H3A	novel	NA	NA	NA	NA	not any annotated donor/acceptor	TRUE	canonical	0	0	476	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5820_CONTIG_1	19	+	415	4	full-splice_match	APOC1	ENST00000252491	461	4	44	2	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_775_CONTIG_1	X	+	1372	6	full-splice_match	IGBP1	ENST00000342206	1862	6	486	4	multi-exon	FALSE	canonical	0	0	884	2	NA	0	0	FALSE	NA	NA	0	A	coding	339	1017	14	1030	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_282_CONTIG_1	4	-	1492	10	full-splice_match	FGG	ENST00000404648	1760	10	193	75	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6876_CONTIG_1	7	-	870	8	full-splice_match	PSMA2	ENST00000223321	1483	8	49	564	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7243_CONTIG_1	1	+	570	4	full-splice_match	CAMTA1	ENST00000473578	567	4	-26	23	multi-exon	FALSE	canonical	0	0	311	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_311_CONTIG_1	17	+	1756	3	full-splice_match	SNHG16	ENST00000493536	2424	3	0	668	multi-exon	FALSE	canonical	0	0	199	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	80	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2656_CONTIG_1	7	-	1485	2	incomplete-splice_match	PDK4	ENST00000473796	2136	7	677	-26	5prime_fragment	FALSE	canonical	0	0	52	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.478	0.522	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6272_CONTIG_1	4	+	1993	15	full-splice_match	ALB	ENST00000295897	2263	15	50	220	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2627_CONTIG_1	10	+	1638	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	29	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	55	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5214_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2575_CONTIG_1	1	-	1645	3	incomplete-splice_match	BSDC1	ENST00000413080	2645	10	958	42	5prime_fragment	FALSE	canonical	0	0	34	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_887_CONTIG_1	X	-	863	2	antisense	novelGene_CLDN2_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	228	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8733_CONTIG_1	4	-	1531	10	full-splice_match	FGG	ENST00000404648	1760	10	193	36	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1414_CONTIG_1	12	+	1049	5	novel_not_in_catalog	SDSL	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	674	2	NA	0	0	FALSE	NA	NA	0	A	coding	256	768	98	865	25	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2719_CONTIG_1	1	-	681	5	novel_in_catalog	MRPL20	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	172	2	NA	1	0	FALSE	NA	NA	0	A	coding	109	327	86	412	45	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4055_CONTIG_1	2	+	903	10	incomplete-splice_match	ARPC2	ENST00000315717	1505	11	95	507	3prime_fragment	TRUE	canonical	0	0	851	2	NA	0	0	FALSE	NA	NA	0	A	coding	276	828	75	902	25	0.256	0.744	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3931_CONTIG_1	1	+	1400	8	novel_in_catalog	CCDC18	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1277	2	NA	1	0	FALSE	NA	NA	0	A	coding	306	918	483	1400	30	0.328	0.672	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_870_CONTIG_1	7	-	1449	5	full-splice_match	SBDS	ENST00000246868	1631	5	15	167	multi-exon	FALSE	canonical	0	0	297	2	NA	0	0	FALSE	NA	NA	0	A	coding	250	750	170	919	20	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7864_CONTIG_1	8	+	1689	3	full-splice_match	MYC	ENST00000377970	2345	3	505	151	multi-exon	FALSE	canonical	0	0	807	2	NA	0	0	FALSE	NA	NA	0	C	coding	439	1317	51	1367	40	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8110_CONTIG_1	9	+	720	6	full-splice_match	ORM1	ENST00000259396	802	6	45	37	multi-exon	FALSE	canonical	0	0	573	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	34	636	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2726_CONTIG_1	9	+	819	8	novel_in_catalog	ASS1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	630	2	NA	0	0	FALSE	NA	NA	0	C	coding	161	483	191	673	15	0.242	0.758	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8272_CONTIG_1	5	-	1111	6	incomplete-splice_match	F12	ENST00000253496	2049	14	936	2	5prime_fragment	FALSE	canonical	0	0	131	2	NA	0	0	FALSE	NA	NA	0	C	coding	300	900	59	958	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5413_CONTIG_1	7	-	1902	7	incomplete-splice_match	EIF2AK1	ENST00000199389	4463	15	980	1581	5prime_fragment	FALSE	canonical	0	0	286	2	NA	1	0	FALSE	NA	NA	0	A	coding	252	756	302	1057	25	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3278_CONTIG_1	22	-	1290	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	4	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	27	1235	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4542_CONTIG_1	17	+	1050	6	incomplete-splice_match	SERPINF2	ENST00000382061	2265	10	347	868	internal_fragment	FALSE	canonical	0	0	771	2	NA	0	0	FALSE	NA	NA	0	B	coding	282	846	204	1049	30	0.606	0.394	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3133_CONTIG_1	12	+	2423	11	incomplete-splice_match	C1S	ENST00000360817	2635	12	252	-40	internal_fragment	FALSE	canonical	0	0	1294	2	NA	0	0	FALSE	NA	NA	0	B	coding	688	2064	25	2088	20	0.738	0.262	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1954_CONTIG_1	12	-	632	6	novel_not_in_catalog	STAC3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	225	2	NA	0	0	TRUE	NA	NA	0	A	coding	127	381	223	603	20	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5447_CONTIG_1	2	+	1564	2	novel_not_in_catalog	BIRC6	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	1464	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_917_CONTIG_1	13	+	828	3	incomplete-splice_match	MPHOSPH8	ENST00000414242	2705	13	0	1877	3prime_fragment	FALSE	canonical	0	0	470	2	NA	0	0	FALSE	NA	NA	0	A	coding	242	726	102	827	55	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_146_CONTIG_1	10	+	1509	6	incomplete-splice_match	CYP2C9	ENST00000260682	1847	9	601	-263	internal_fragment	FALSE	canonical	0	0	702	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3138_CONTIG_1	6	-	779	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	146	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	63	728	40	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8260_CONTIG_1	11	-	1187	4	full-splice_match	UBE2L6	ENST00000287156	1354	4	160	7	multi-exon	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	49	495	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1039_CONTIG_1	4	+	1306	7	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1000	2	NA	0	0	TRUE	NA	NA	0	C	coding	238	714	516	1229	40	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8328_CONTIG_1	2	+	1438	6	full-splice_match	ACP1	ENST00000272065	1549	6	75	36	multi-exon	FALSE	canonical	0	0	417	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4100_CONTIG_1	17	-	1494	6	full-splice_match	RAB5C	ENST00000346213	1671	6	28	149	multi-exon	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	A	coding	216	648	186	833	20	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7227_CONTIG_1	15	+	1459	8	incomplete-splice_match	LIPC	ENST00000299022	1782	9	323	0	internal_fragment	FALSE	canonical	0	0	1300	2	NA	0	0	FALSE	NA	NA	0	A	coding	452	1356	54	1409	15	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4734_CONTIG_1	11	-	1542	10	full-splice_match	HPX	ENST00000265983	1652	10	74	36	multi-exon	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	28	1413	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2637_CONTIG_1	4	-	1410	10	full-splice_match	FGG	ENST00000404648	1760	10	196	154	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3635_CONTIG_1	10	+	1748	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	-77	-4	multi-exon	FALSE	canonical	0	0	1407	2	NA	2	0	FALSE	NA	NA	0	C	coding	493	1479	111	1589	40	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4255_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	6	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1301_CONTIG_1	7	+	1070	4	genic_intron	novelGene_310	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	959	2	NA	4	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.304	0.696	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1216_CONTIG_1	4	+	1763	17	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1605	2	NA	0	0	TRUE	NA	NA	0	C	coding	420	1260	280	1539	40	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4862_CONTIG_1	4	+	1950	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1836	2	NA	0	0	TRUE	NA	NA	0	C	coding	522	1566	40	1605	0	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7167_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1447_CONTIG_1	4	+	1532	8	full-splice_match	FGB	ENST00000302068	1975	8	55	388	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_364_CONTIG_1	9	+	763	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-3	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3655_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1131_CONTIG_1	19	+	713	7	novel_not_in_catalog	USE1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	516	2	NA	0	0	FALSE	NA	NA	0	A	coding	157	471	62	532	0	0.464	0.536	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3866_CONTIG_1	4	+	1919	15	full-splice_match	ALB	ENST00000295897	2263	15	50	294	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3908_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	51	166	multi-exon	FALSE	canonical	0	0	1891	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	45	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8381_CONTIG_1	9	-	851	8	novel_in_catalog	AMBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	93	797	20	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7334_CONTIG_1	11	-	1539	10	full-splice_match	HPX	ENST00000265983	1652	10	77	36	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3817_CONTIG_1	1	-	1479	9	full-splice_match	DNAJC8	ENST00000263697	1480	9	-3	4	multi-exon	FALSE	canonical	0	0	108	2	NA	0	0	FALSE	NA	NA	0	C	coding	253	759	31	789	25	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2834_CONTIG_1	22	+	1353	3	full-splice_match	ATF4	ENST00000396680	1420	3	-2	69	multi-exon	FALSE	canonical	0	0	508	2	NA	1	0	FALSE	NA	NA	0	C	coding	351	1053	283	1335	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8616_CONTIG_1	8	-	909	6	full-splice_match	HRSP12	ENST00000254878	1057	6	119	29	multi-exon	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3037_CONTIG_1	GL000220.1	+	857	2	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	774	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.204	0.796	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3667_CONTIG_1	16	-	1038	5	full-splice_match	GCSH	ENST00000315467	1552	5	119	395	multi-exon	FALSE	canonical	0	0	154	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4595_CONTIG_1	5	-	916	2	incomplete-splice_match	SEPP1	ENST00000509276	738	3	280	-458	5prime_fragment	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6697_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3753_CONTIG_1	11	-	1429	10	full-splice_match	HPX	ENST00000265983	1652	10	77	146	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_915_CONTIG_1	15	+	937	4	full-splice_match	B2M	ENST00000558401	1715	4	36	742	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4843_CONTIG_1	5	-	431	3	full-splice_match	NDUFA2	ENST00000252102	804	3	143	230	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	A	coding	99	297	60	356	15	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_866_CONTIG_1	6	-	730	7	novel_not_in_catalog	ECI2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	1	0	TRUE	NA	NA	0	C	coding	190	570	115	684	20	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2865_CONTIG_1	15	+	409	4	novel_not_in_catalog	SERF2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	1	1	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_945_CONTIG_1	14	-	620	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	383	447	internal_fragment	FALSE	canonical	0	0	297	2	NA	0	0	FALSE	NA	NA	0	C	coding	80	240	381	620	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6590_CONTIG_1	19	+	1082	4	full-splice_match	APOE	ENST00000252486	1208	4	39	87	multi-exon	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	73	1023	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8569_CONTIG_1	4	+	2044	15	full-splice_match	ALB	ENST00000295897	2263	15	50	169	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3842_CONTIG_1	11	-	365	4	full-splice_match	TMEM258	ENST00000537328	575	4	19	191	multi-exon	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1067_CONTIG_1	5	+	873	3	full-splice_match	PAIP2	ENST00000510409	815	3	9	-67	multi-exon	FALSE	canonical	0	0	279	2	NA	0	0	FALSE	NA	NA	0	A	coding	114	342	142	483	75	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2768_CONTIG_1	4	-	2128	6	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	111	2	NA	0	0	TRUE	NA	NA	0	C	coding	618	1854	58	1911	30	0.952	0.048	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6756_CONTIG_1	16	+	1235	5	full-splice_match	HP	ENST00000565574	1187	5	-3	-45	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6382_CONTIG_1	6	-	1368	6	incomplete-splice_match	EEF1A1	ENST00000331523	1923	8	397	158	5prime_fragment	FALSE	canonical	0	0	172	2	NA	0	0	FALSE	NA	NA	0	C	coding	361	1083	152	1234	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2050_CONTIG_1	3	+	1571	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	1	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4771_CONTIG_1	9	-	858	7	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	157	471	92	562	20	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1044_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5499_CONTIG_1	1	+	1299	8	incomplete-splice_match	EPHX1	ENST00000366837	1776	9	10	467	3prime_fragment	FALSE	canonical	0	0	1226	2	NA	0	0	FALSE	NA	NA	0	C	coding	371	1113	187	1299	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5662_CONTIG_1	16	+	1235	5	full-splice_match	HP	ENST00000398131	1252	5	14	3	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7351_CONTIG_1	4	+	619	4	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	331	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7182_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	454	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	47	1006	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2781_CONTIG_1	19	+	1303	9	incomplete-splice_match	HPN	ENST00000392226	1783	14	483	-3	internal_fragment	FALSE	canonical	0	0	977	2	NA	0	0	FALSE	NA	NA	0	B	coding	325	975	39	1013	25	0.632	0.368	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5364_CONTIG_1	11	-	1154	5	incomplete-splice_match	HSPA8	ENST00000533540	1826	8	620	52	5prime_fragment	FALSE	canonical	0	0	140	2	NA	1	0	FALSE	NA	NA	0	C	coding	237	711	248	958	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4265_CONTIG_1	1	+	1591	9	novel_not_in_catalog	PLOD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	705	2	NA	0	0	TRUE	NA	NA	0	B	coding	205	615	244	858	30	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_171_CONTIG_1	4	-	498	5	full-splice_match	FGG	ENST00000464532	703	5	-3	208	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	51	497	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4998_CONTIG_1	X	+	1049	3	full-splice_match	TCEAL4	ENST00000494801	1008	3	-50	9	multi-exon	FALSE	canonical	0	0	185	2	NA	1	0	FALSE	NA	NA	0	A	coding	215	645	208	852	35	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_366_CONTIG_1	9	-	1138	10	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	203	2	NA	0	0	FALSE	NA	NA	0	C	coding	334	1002	87	1088	10	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4541_CONTIG_1	9	+	757	6	full-splice_match	ORM1	ENST00000259396	802	6	42	3	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6803_CONTIG_1	4	+	1495	8	full-splice_match	FGB	ENST00000302068	1975	8	59	421	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2446_CONTIG_1	3	+	1130	3	novel_in_catalog	SLC38A3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	250	2	NA	2	0	FALSE	NA	NA	0	B	coding	110	330	23	352	50	0.49	0.51	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8275_CONTIG_1	6	-	1210	4	full-splice_match	SNX3	ENST00000230085	1755	4	220	325	multi-exon	FALSE	canonical	0	0	281	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1898_CONTIG_1	14	+	742	2	full-splice_match	ANG	ENST00000336811	1222	2	475	5	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	126	566	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4834_CONTIG_1	19	-	1934	2	novel_in_catalog	C19orf25	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	54	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6210_CONTIG_1	4	+	1398	8	full-splice_match	FGB	ENST00000302068	1975	8	65	512	multi-exon	FALSE	canonical	0	0	1242	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	8	1396	30	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5429_CONTIG_1	19	+	402	4	full-splice_match	APOC1	ENST00000252491	461	4	44	15	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1815_CONTIG_1	4	+	966	6	incomplete-splice_match	HGFAC	ENST00000509689	1894	9	803	125	internal_fragment	FALSE	canonical	0	0	892	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	10	0.54	0.46	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2070_CONTIG_1	5	+	725	2	incomplete-splice_match	LMNB1	ENST00000504788	1801	11	1393	-317	internal_fragment	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5131_CONTIG_1	10	-	1791	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	0	132	multi-exon	FALSE	canonical	0	0	263	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7345_CONTIG_1	17	+	1778	4	novel_in_catalog	GPRC5C	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1199	2	NA	0	0	FALSE	NA	NA	0	B	coding	441	1323	54	1376	15	0.572	0.428	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3_CONTIG_1	3	+	694	5	full-splice_match	FAM162A	ENST00000477892	3052	5	15	2343	multi-exon	FALSE	canonical	0	0	441	2	NA	0	0	FALSE	NA	NA	0	A	coding	154	462	70	531	30	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1614_CONTIG_1	19	+	1738	2	full-splice_match	ZFP36	ENST00000248673	1745	2	0	7	multi-exon	FALSE	canonical	0	0	82	2	NA	1	0	FALSE	NA	NA	0	C	coding	332	996	41	1036	20	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1176_CONTIG_1	7	-	1489	6	incomplete-splice_match	HIBADH	ENST00000428288	1669	7	171	9	5prime_fragment	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3312_CONTIG_1	2	+	885	3	full-splice_match	ID2	ENST00000396290	1362	3	345	132	multi-exon	FALSE	canonical	0	0	250	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1653_CONTIG_1	4	+	2013	15	full-splice_match	ALB	ENST00000295897	2263	15	50	200	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1893_CONTIG_1	3	+	399	3	incomplete-splice_match	ITIH1	ENST00000537050	2486	18	600	1487	internal_fragment	FALSE	canonical	0	0	225	2	NA	0	0	FALSE	NA	NA	0	C	coding	67	201	198	398	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4394_CONTIG_1	11	-	883	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	16	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5404_CONTIG_1	16	+	340	3	full-splice_match	MT1H	ENST00000332374	397	3	52	5	multi-exon	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	coding	23	69	240	308	5	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2794_CONTIG_1	16	+	384	3	full-splice_match	MT1E	ENST00000306061	704	3	311	9	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4323_CONTIG_1	1	+	1379	6	full-splice_match	HSD11B1	ENST00000367027	1319	6	2	-62	multi-exon	FALSE	canonical	0	0	756	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	141	971	30	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7787_CONTIG_1	2	-	1566	15	incomplete-splice_match	ABCB6	ENST00000295750	2238	18	649	23	5prime_fragment	TRUE	canonical	0	0	48	2	NA	0	0	FALSE	NA	NA	0	A	coding	436	1308	113	1420	45	0.226	0.774	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6213_CONTIG_1	3	+	711	5	full-splice_match	NDUFAF3	ENST00000326925	2012	5	1088	213	multi-exon	FALSE	canonical	0	0	484	2	NA	0	0	FALSE	NA	NA	0	A	coding	127	381	218	598	15	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2387_CONTIG_1	4	-	637	2	genic	SMIM14	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	617	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.956	0.044	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6877_CONTIG_1	18	+	584	4	full-splice_match	TTR	ENST00000237014	957	4	151	222	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	50	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7860_CONTIG_1	19	+	405	4	full-splice_match	APOC1	ENST00000252491	461	4	43	13	multi-exon	FALSE	canonical	0	0	241	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	48	296	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3402_CONTIG_1	1	+	1592	9	incomplete-splice_match	C4BPA	ENST00000367070	2243	12	575	76	internal_fragment	FALSE	canonical	0	0	1239	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3615_CONTIG_1	3	+	1458	13	incomplete-splice_match	TF	ENST00000264998	2143	16	124	561	internal_fragment	FALSE	canonical	0	0	1438	2	NA	0	0	FALSE	NA	NA	0	C	coding	442	1326	133	1458	50	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7816_CONTIG_1	17	+	1547	7	full-splice_match	COX10	ENST00000261643	2873	7	-14	1340	multi-exon	FALSE	canonical	0	0	1019	2	NA	0	0	FALSE	NA	NA	0	A	coding	298	894	527	1420	20	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4201_CONTIG_1	5	-	562	3	full-splice_match	HINT1	ENST00000304043	1081	3	231	288	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	126	378	50	427	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_87_CONTIG_1	4	+	680	6	incomplete-splice_match	ALB	ENST00000415165	1483	11	464	339	internal_fragment	FALSE	canonical	0	0	653	2	NA	0	0	FALSE	NA	NA	0	C	coding	207	621	58	678	45	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7164_CONTIG_1	5	-	1324	6	full-splice_match	CMBL	ENST00000296658	2335	6	340	671	multi-exon	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	245	735	82	816	70	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5218_CONTIG_1	21	+	883	5	full-splice_match	SOD1	ENST00000270142	966	5	71	12	multi-exon	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	78	539	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5553_CONTIG_1	12	-	660	2	full-splice_match	UBC	ENST00000339647	2688	2	497	1531	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	197	591	68	658	40	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6811_CONTIG_1	4	+	1570	8	full-splice_match	FGB	ENST00000302068	1975	8	55	350	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3769_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	59	334	multi-exon	FALSE	canonical	0	0	1248	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2686_CONTIG_1	4	+	1594	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	512	157	internal_fragment	FALSE	canonical	0	0	1430	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	16	1404	30	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4679_CONTIG_1	2	+	937	4	novel_not_in_catalog	PLGLB2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	324	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2217_CONTIG_1	13	-	834	6	full-splice_match	TPT1	ENST00000530705	1028	6	184	10	multi-exon	FALSE	canonical	0	0	145	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	118	633	40	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5697_CONTIG_1	10	-	1544	7	full-splice_match	PRDX3	ENST00000298510	1584	7	32	8	multi-exon	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.334	0.666	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3873_CONTIG_1	19	+	1162	4	full-splice_match	APOE	ENST00000252486	1208	4	44	2	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8251_CONTIG_1	14	-	1010	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-11	451	multi-exon	FALSE	canonical	0	0	41	2	NA	1	0	FALSE	NA	NA	0	C	coding	321	963	46	1008	15	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6341_CONTIG_1	14	-	1009	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	454	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5558_CONTIG_1	20	+	593	3	incomplete-splice_match	ZGPAT	ENST00000328969	1945	7	1017	335	internal_fragment	FALSE	canonical	0	0	567	2	NA	0	0	FALSE	NA	NA	0	C	coding	151	453	140	592	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2214_CONTIG_1	15	-	2312	9	full-splice_match	GATM	ENST00000396659	2597	9	249	36	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8473_CONTIG_1	10	-	915	6	full-splice_match	RBP4	ENST00000371464	1068	6	-10	163	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	85	687	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5427_CONTIG_1	2	+	1397	11	incomplete-splice_match	RIF1	ENST00000428287	7722	35	2166	4159	internal_fragment	FALSE	canonical	0	0	1261	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.626	0.374	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4776_CONTIG_1	10	+	2101	16	novel_in_catalog	OPTN	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1963	2	NA	0	0	FALSE	NA	NA	0	C	coding	577	1731	352	2082	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_895_CONTIG_1	19	+	412	4	full-splice_match	APOC1	ENST00000252491	461	4	42	7	multi-exon	FALSE	canonical	0	0	242	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	49	297	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5418_CONTIG_1	14	-	389	2	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	555	506	internal_fragment	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	60	180	209	388	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7678_CONTIG_1	4	-	1102	4	full-splice_match	CXCL2	ENST00000508487	1218	4	98	18	multi-exon	FALSE	canonical	0	0	175	2	NA	1	0	FALSE	NA	NA	0	C	coding	107	321	76	396	60	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4855_CONTIG_1	16	+	1758	12	incomplete-splice_match	ACSM2A	ENST00000417235	1835	13	110	-33	internal_fragment	FALSE	canonical	0	0	1452	2	NA	0	0	FALSE	NA	NA	0	C	coding	498	1494	61	1554	60	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1808_CONTIG_1	11	-	443	4	novel_in_catalog	RPS25	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	60	434	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_701_CONTIG_1	12	-	1728	11	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	1	0	TRUE	NA	NA	0	C	coding	557	1671	58	1728	50	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4742_CONTIG_1	5	-	1490	11	fusion	SDHAP3_RP11-43F13.1	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.954	0.046	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7373_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	50	171	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8449_CONTIG_1	4	-	1556	13	full-splice_match	GC	ENST00000273951	1972	13	286	130	multi-exon	FALSE	canonical	0	0	116	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_487_CONTIG_1	7	-	1042	7	full-splice_match	TMEM176B	ENST00000326442	1129	7	11	76	multi-exon	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	C	coding	270	810	62	871	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3289_CONTIG_1	1	+	738	3	full-splice_match	SH3BGRL3	ENST00000270792	1655	3	923	-6	multi-exon	FALSE	canonical	0	0	273	2	NA	0	0	FALSE	NA	NA	0	C	coding	93	279	58	336	0	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6579_CONTIG_1	1	+	608	6	incomplete-splice_match	PRG4	ENST00000445192	5044	13	0	4436	3prime_fragment	FALSE	canonical	0	0	514	2	NA	0	0	FALSE	NA	NA	0	A	coding	187	561	46	606	40	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5572_CONTIG_1	11	-	1686	10	novel_in_catalog	IRF7	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	A	coding	210	630	975	1604	30	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3961_CONTIG_1	11	-	598	5	full-splice_match	SAA2	ENST00000529528	610	5	4	8	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	99	464	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8273_CONTIG_1	9	+	751	6	full-splice_match	ORM1	ENST00000259396	802	6	42	9	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3552_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2137_CONTIG_1	4	+	2039	15	full-splice_match	ALB	ENST00000295897	2263	15	50	174	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5807_CONTIG_1	22	+	1318	10	full-splice_match	UPB1	ENST00000326010	2290	10	272	700	multi-exon	FALSE	canonical	0	0	1143	2	NA	0	0	FALSE	NA	NA	0	C	coding	384	1152	73	1224	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2039_CONTIG_1	4	+	1148	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1118	2	NA	0	0	TRUE	NA	NA	0	C	coding	351	1053	40	1092	40	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8447_CONTIG_1	19	+	472	8	full-splice_match	FXYD1	ENST00000455515	594	8	41	81	multi-exon	TRUE	canonical	0	0	419	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_20_CONTIG_1	12	-	698	7	incomplete-splice_match	SLC38A2	ENST00000256689	4888	16	271	3919	internal_fragment	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.602	0.398	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4518_CONTIG_1	4	+	616	5	novel_in_catalog	ALB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	517	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	233	616	45	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5424_CONTIG_1	3	+	1172	9	incomplete-splice_match	TF	ENST00000264998	2143	16	964	7	internal_fragment	FALSE	canonical	0	0	973	2	NA	0	0	FALSE	NA	NA	0	C	coding	298	894	112	1005	40	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_620_CONTIG_1	11	+	935	3	full-splice_match	NNMT	ENST00000299964	1610	3	625	50	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	108	899	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7905_CONTIG_1	4	+	1137	8	full-splice_match	HADH	ENST00000309522	1912	8	72	703	multi-exon	FALSE	canonical	0	0	903	2	NA	0	0	FALSE	NA	NA	0	A	coding	314	942	78	1019	30	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4227_CONTIG_1	3	+	2285	17	full-splice_match	TF	ENST00000402696	2968	17	437	246	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	60	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6166_CONTIG_1	16	+	604	3	incomplete-splice_match	HP	ENST00000570083	1270	5	236	430	internal_fragment	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	183	602	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1008_CONTIG_1	4	-	962	5	incomplete-splice_match	FGG	ENST00000405164	1539	10	691	-114	5prime_fragment	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	148	444	235	678	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_204_CONTIG_1	11	+	266	3	incomplete-splice_match	SAA1	ENST00000356524	615	4	90	259	3prime_fragment	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8477_CONTIG_1	1	-	2015	2	full-splice_match	CRP	ENST00000255030	2015	2	0	0	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	coding	224	672	105	776	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_905_CONTIG_1	11	+	939	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	49	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4956_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_190_CONTIG_1	4	+	917	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	563	3	internal_fragment	FALSE	canonical	0	0	755	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	310	729	35	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7423_CONTIG_1	19	+	1555	8	novel_in_catalog	QTRT1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1309	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	1079	1459	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7986_CONTIG_1	12	+	1642	3	novel_in_catalog	ETNK1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	676	2	NA	2	0	FALSE	NA	NA	0	A	coding	186	558	261	818	30	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1434_CONTIG_1	12	+	913	7	incomplete-splice_match	ALDH2	ENST00000416293	1572	12	534	125	internal_fragment	FALSE	canonical	0	0	827	2	NA	0	0	FALSE	NA	NA	0	C	coding	290	870	43	912	30	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4111_CONTIG_1	12	-	967	4	novel_not_in_catalog	HAL	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	49	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4660_CONTIG_1	7	-	1330	9	full-splice_match	PON3	ENST00000265627	1105	9	12	-237	multi-exon	FALSE	canonical	0	0	73	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8170_CONTIG_1	19	-	1294	8	novel_not_in_catalog	CYP2A6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	201	2	NA	0	0	TRUE	NA	NA	0	C	coding	424	1272	22	1293	15	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5071_CONTIG_1	8	-	1917	6	incomplete-splice_match	ST3GAL1	ENST00000522652	2580	10	700	-37	5prime_fragment	FALSE	canonical	0	0	344	2	NA	0	0	FALSE	NA	NA	0	B	coding	340	1020	39	1058	70	0.61	0.39	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6947_CONTIG_1	14	-	1002	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	461	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	318	954	48	1001	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2782_CONTIG_1	4	+	1575	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	313	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4486_CONTIG_1	19	+	1171	4	full-splice_match	APOE	ENST00000252486	1208	4	37	0	multi-exon	FALSE	canonical	0	0	310	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	75	1025	0	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2086_CONTIG_1	4	+	2044	15	full-splice_match	ALB	ENST00000295897	2263	15	50	169	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8704_CONTIG_1	4	+	1911	15	full-splice_match	ALB	ENST00000295897	2263	15	50	302	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	70	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3371_CONTIG_1	17	-	1981	6	full-splice_match	TMEM220	ENST00000341871	3106	6	290	835	multi-exon	FALSE	canonical	0	0	247	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4270_CONTIG_1	4	+	2054	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	35	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6848_CONTIG_1	4	-	1603	14	novel_not_in_catalog	GC	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	116	2	NA	0	0	TRUE	NA	NA	0	C	coding	201	603	810	1412	55	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1553_CONTIG_1	16	+	278	4	incomplete-splice_match	HP	ENST00000398131	1252	5	17	957	3prime_fragment	FALSE	canonical	0	0	217	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2893_CONTIG_1	6	+	1568	11	full-splice_match	SLC22A1	ENST00000366963	1948	11	337	43	multi-exon	FALSE	canonical	0	0	1408	2	NA	0	0	FALSE	NA	NA	0	C	coding	362	1086	387	1472	15	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6498_CONTIG_1	12	+	1437	5	full-splice_match	HSD17B6	ENST00000322165	1512	5	-4	79	multi-exon	FALSE	canonical	0	0	850	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	115	1065	5	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7457_CONTIG_1	2	-	1272	9	incomplete-splice_match	HSPD1	ENST00000388968	2455	12	189	994	internal_fragment	FALSE	canonical	0	0	77	2	NA	0	0	FALSE	NA	NA	0	B	coding	387	1161	110	1270	20	0.724	0.276	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8149_CONTIG_1	4	-	992	6	incomplete-splice_match	ADH4	ENST00000505590	1400	10	509	-101	5prime_fragment	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5890_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6113_CONTIG_1	4	+	1141	9	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1034	2	NA	1	0	TRUE	NA	NA	0	C	coding	269	807	202	1008	15	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1557_CONTIG_1	18	+	607	4	full-splice_match	TTR	ENST00000237014	957	4	151	199	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6402_CONTIG_1	16	-	991	2	incomplete-splice_match	CREBBP	ENST00000571763	548	3	-618	175	internal_fragment	FALSE	canonical	0	0	968	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.39	0.61	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_232_CONTIG_1	10	+	1784	6	incomplete-splice_match	MAP3K8	ENST00000375321	2518	7	524	210	internal_fragment	FALSE	canonical	0	0	866	2	NA	0	0	FALSE	NA	NA	0	A	coding	304	912	83	994	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3328_CONTIG_1	6	+	2706	19	full-splice_match	PLG	ENST00000308192	2741	19	0	35	multi-exon	TRUE	canonical	0	0	2334	2	NA	1	0	FALSE	NA	NA	0	C	coding	810	2430	64	2493	25	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8707_CONTIG_1	1	-	1589	14	incomplete-splice_match	POLR3C	ENST00000334163	1851	15	223	39	5prime_fragment	FALSE	canonical	0	0	85	2	NA	0	0	FALSE	NA	NA	0	A	coding	450	1350	191	1540	40	0.226	0.774	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7435_CONTIG_1	4	-	731	8	novel_not_in_catalog	GC	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	123	2	NA	0	0	TRUE	NA	NA	0	C	coding	186	558	66	623	20	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5449_CONTIG_1	4	+	2023	15	full-splice_match	ALB	ENST00000295897	2263	15	48	192	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4750_CONTIG_1	7	+	1250	10	incomplete-splice_match	TAX1BP1	ENST00000416801	2221	16	802	169	internal_fragment	FALSE	canonical	0	0	1182	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.62	0.38	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1545_CONTIG_1	14	-	1009	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-14	455	multi-exon	FALSE	canonical	0	0	44	2	NA	1	0	FALSE	NA	NA	0	C	coding	320	960	49	1008	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4080_CONTIG_1	11	+	1656	8	full-splice_match	LDHA	ENST00000422447	2416	8	175	585	multi-exon	FALSE	canonical	0	0	932	2	NA	0	0	FALSE	NA	NA	0	C	coding	332	996	99	1094	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6206_CONTIG_1	10	-	887	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	190	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1962_CONTIG_1	10	+	1693	4	full-splice_match	PGAM1	ENST00000334828	1830	4	137	0	multi-exon	FALSE	canonical	0	0	606	2	NA	0	0	FALSE	NA	NA	0	C	coding	254	762	12	773	15	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1757_CONTIG_1	4	+	1497	8	full-splice_match	FGB	ENST00000302068	1975	8	55	423	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_382_CONTIG_1	14	+	713	2	novel_not_in_catalog	ANG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	79	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	98	538	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7617_CONTIG_1	17	-	1260	9	full-splice_match	ASGR1	ENST00000269299	1504	9	206	38	multi-exon	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	coding	291	873	195	1067	25	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4162_CONTIG_1	19	+	1664	13	incomplete-splice_match	HPN	ENST00000392226	1783	14	87	32	internal_fragment	FALSE	canonical	0	0	1373	2	NA	0	0	FALSE	NA	NA	0	B	coding	417	1251	159	1409	45	0.706	0.294	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3475_CONTIG_1	19	-	804	2	novel_in_catalog	INSR	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	136	2	NA	0	0	FALSE	NA	NA	0	A	coding	133	399	90	488	30	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3108_CONTIG_1	4	-	473	3	incomplete-splice_match	FGG	ENST00000405164	1539	10	869	197	internal_fragment	FALSE	canonical	0	0	40	2	NA	0	0	FALSE	NA	NA	0	C	coding	139	417	57	473	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6226_CONTIG_1	8	+	1256	2	incomplete-splice_match	MYC	ENST00000524013	2150	3	825	69	internal_fragment	FALSE	canonical	0	0	348	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5548_CONTIG_1	4	+	2058	15	full-splice_match	ALB	ENST00000295897	2263	15	48	157	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_223_CONTIG_1	11	-	400	6	genic_intron	novelGene_336	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	200	2	NA	9	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.486	0.514	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7520_CONTIG_1	9	+	726	6	full-splice_match	ORM1	ENST00000259396	802	6	42	34	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8535_CONTIG_1	2	-	1094	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	1092	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	45	581	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7880_CONTIG_1	3	+	2294	13	novel_not_in_catalog	MME	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1127	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.666	0.334	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5450_CONTIG_1	18	+	607	4	full-splice_match	TTR	ENST00000237014	957	4	151	199	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5859_CONTIG_1	10	+	1581	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	86	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7660_CONTIG_1	22	-	1004	4	novel_not_in_catalog	TYMP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	109	2	NA	0	0	TRUE	NA	NA	0	A	coding	280	840	120	959	10	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8711_CONTIG_1	9	+	752	6	full-splice_match	ORM1	ENST00000259396	802	6	42	8	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2552_CONTIG_1	9	-	1029	9	incomplete-splice_match	AMBP	ENST00000265132	1434	10	172	233	internal_fragment	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	312	936	92	1027	5	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5677_CONTIG_1	18	+	584	4	full-splice_match	TTR	ENST00000237014	957	4	151	222	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	50	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2209_CONTIG_1	3	-	1136	10	incomplete-splice_match	IMPDH2	ENST00000326739	1643	14	451	56	5prime_fragment	FALSE	canonical	0	0	120	2	NA	1	0	FALSE	NA	NA	0	A	coding	365	1095	37	1131	25	0.23	0.77	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6703_CONTIG_1	17	-	1572	8	full-splice_match	VTN	ENST00000226218	2149	8	515	62	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_597_CONTIG_1	16	+	1407	7	full-splice_match	HP	ENST00000355906	1443	7	31	5	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5115_CONTIG_1	9	+	742	6	full-splice_match	ORM1	ENST00000259396	802	6	42	18	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7917_CONTIG_1	6	-	912	10	incomplete-splice_match	WDR27	ENST00000546525	3511	20	964	1635	internal_fragment	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	A	coding	128	384	40	423	25	0.246	0.754	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5655_CONTIG_1	4	-	1559	10	full-splice_match	FGG	ENST00000404648	1760	10	193	8	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3504_CONTIG_1	4	+	1603	13	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1439	2	NA	2	0	TRUE	NA	NA	0	C	coding	458	1374	40	1413	30	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_148_CONTIG_1	10	-	1281	4	full-splice_match	KLF6	ENST00000497571	4656	4	152	3223	multi-exon	FALSE	canonical	0	0	211	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	110	958	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5000_CONTIG_1	16	+	397	3	full-splice_match	MT2A	ENST00000245185	786	3	385	4	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3995_CONTIG_1	4	+	1914	8	full-splice_match	FGB	ENST00000302068	1975	8	61	0	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2309_CONTIG_1	16	+	1133	8	novel_not_in_catalog	KATNB1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	677	2	NA	0	0	FALSE	NA	NA	0	A	coding	223	669	61	729	45	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_695_CONTIG_1	18	+	606	4	full-splice_match	TTR	ENST00000237014	957	4	151	200	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8350_CONTIG_1	4	+	1623	12	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1461	2	NA	1	0	TRUE	NA	NA	0	C	coding	210	630	46	675	35	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2892_CONTIG_1	11	+	1480	10	incomplete-splice_match	F2	ENST00000311907	2023	14	393	150	internal_fragment	FALSE	canonical	0	0	1388	2	NA	0	0	FALSE	NA	NA	0	C	coding	411	1233	246	1478	25	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6979_CONTIG_1	22	-	1813	8	novel_in_catalog	CYP2D6	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	270	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	91	1050	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6572_CONTIG_1	9	+	1023	5	incomplete-splice_match	PMPCA	ENST00000399219	1987	12	965	-1	internal_fragment	FALSE	canonical	0	0	356	2	NA	0	0	FALSE	NA	NA	0	B	coding	167	501	23	523	5	0.562	0.438	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3000_CONTIG_1	11	-	920	8	full-splice_match	THYN1	ENST00000392594	943	8	6	17	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	A	coding	225	675	101	775	45	0.274	0.726	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7534_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	50	202	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6370_CONTIG_1	12	+	1598	13	full-splice_match	ALDH2	ENST00000261733	2018	13	43	377	multi-exon	FALSE	canonical	0	0	1539	2	NA	0	0	FALSE	NA	NA	0	C	coding	517	1551	19	1569	35	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7960_CONTIG_1	2	-	1093	3	genic_intron	novelGene_903	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	960	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.318	0.682	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6890_CONTIG_1	19	+	863	4	full-splice_match	FTL	ENST00000331825	878	4	8	7	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3479_CONTIG_1	19	+	489	5	full-splice_match	RPL28	ENST00000344063	4796	5	587	3720	multi-exon	FALSE	canonical	0	0	366	2	NA	0	0	FALSE	NA	NA	0	C	coding	137	411	43	453	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3567_CONTIG_1	8	-	1627	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1104	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7143_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1990_CONTIG_1	14	+	277	3	novel_not_in_catalog	SERPINA5	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	183	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7272_CONTIG_1	19	-	662	6	novel_in_catalog	C3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	108	2	NA	0	0	FALSE	NA	NA	0	B	coding	101	303	339	641	35	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_650_CONTIG_1	16	+	1667	6	full-splice_match	HMOX2	ENST00000570646	2147	6	477	3	multi-exon	FALSE	canonical	0	0	951	2	NA	2	0	FALSE	NA	NA	0	C	coding	316	948	129	1076	5	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8151_CONTIG_1	12	+	954	5	novel_not_in_catalog	PEBP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	744	2	NA	0	0	TRUE	NA	NA	0	C	coding	187	561	87	647	85	0.984	0.016	NEG	TRUE	Artifact
SAMPLE_1_MOLECULE_2932_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5300_CONTIG_1	11	+	536	3	novel_in_catalog	CEP164	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	442	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1251_CONTIG_1	8	-	354	2	incomplete-splice_match	RNF19A	ENST00000341084	4285	10	384	3547	internal_fragment	FALSE	canonical	0	0	77	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7436_CONTIG_1	4	-	1565	10	full-splice_match	FGG	ENST00000404648	1760	10	193	2	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2367_CONTIG_1	4	-	1765	12	incomplete-splice_match	CFI	ENST00000394634	2157	13	357	35	5prime_fragment	FALSE	canonical	0	0	179	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4228_CONTIG_1	4	+	1866	8	full-splice_match	FGB	ENST00000302068	1975	8	63	46	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_62_CONTIG_1	18	+	567	4	full-splice_match	TTR	ENST00000237014	957	4	153	237	multi-exon	FALSE	canonical	0	0	360	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	25	465	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8012_CONTIG_1	4	+	972	7	novel_in_catalog	ALB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	838	2	NA	0	0	FALSE	NA	NA	0	C	coding	274	822	150	971	20	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_322_CONTIG_1	11	-	874	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	25	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5853_CONTIG_1	4	+	2034	15	full-splice_match	ALB	ENST00000295897	2263	15	50	179	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6569_CONTIG_1	4	+	791	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	632	60	internal_fragment	FALSE	canonical	0	0	686	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	241	660	15	0.17	0.83	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4801_CONTIG_1	7	-	795	5	genic_intron	novelGene_533	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	661	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6187_CONTIG_1	4	+	1527	8	full-splice_match	FGB	ENST00000302068	1975	8	57	391	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4935_CONTIG_1	21	+	641	5	full-splice_match	SOD1	ENST00000270142	966	5	71	254	multi-exon	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	78	539	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1564_CONTIG_1	17	-	1123	7	incomplete-splice_match	VTN	ENST00000536498	2046	10	80	843	internal_fragment	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	C	coding	351	1053	70	1122	20	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4499_CONTIG_1	7	-	851	8	full-splice_match	PSMA2	ENST00000223321	1483	8	49	583	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_811_CONTIG_1	9	+	758	6	full-splice_match	ORM1	ENST00000259396	802	6	42	2	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3975_CONTIG_1	6	-	382	4	full-splice_match	UQCC2	ENST00000607484	1314	4	121	811	multi-exon	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	A	coding	71	213	86	298	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1125_CONTIG_1	4	+	1317	5	novel_in_catalog	ARHGAP10	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	561	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8377_CONTIG_1	1	-	1477	2	full-splice_match	DIRAS3	ENST00000395201	1629	2	150	2	multi-exon	FALSE	canonical	0	0	80	2	NA	0	0	FALSE	NA	NA	0	A	coding	229	687	146	832	35	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5774_CONTIG_1	9	-	1257	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	5	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4551_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	48	159	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1628_CONTIG_1	19	+	939	4	novel_not_in_catalog	C3P1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	217	2	NA	0	0	FALSE	NA	NA	0	A	coding	81	243	224	466	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_679_CONTIG_1	15	+	947	4	full-splice_match	B2M	ENST00000558401	1715	4	36	732	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6439_CONTIG_1	1	+	1101	9	incomplete-splice_match	MACF1	ENST00000496804	5065	31	3911	53	internal_fragment	FALSE	canonical	0	0	1057	2	NA	0	0	FALSE	NA	NA	0	A	coding	341	1023	77	1099	50	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1262_CONTIG_1	17	-	792	6	incomplete-splice_match	ASGR1	ENST00000380920	944	8	222	-70	5prime_fragment	FALSE	canonical	0	0	23	2	NA	0	0	FALSE	NA	NA	0	C	coding	190	570	44	613	20	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6038_CONTIG_1	X	-	1594	2	genic_intron	novelGene_717	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	1551	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.354	0.646	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6373_CONTIG_1	16	+	1171	5	full-splice_match	HP	ENST00000398131	1252	5	17	64	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5850_CONTIG_1	17	-	1617	8	full-splice_match	VTN	ENST00000226218	2149	8	515	17	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2577_CONTIG_1	14	-	910	5	novel_not_in_catalog	ATG14	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	229	2	NA	5	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7083_CONTIG_1	4	+	2000	15	full-splice_match	ALB	ENST00000295897	2263	15	48	215	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8068_CONTIG_1	X	+	1265	10	full-splice_match	OTC	ENST00000039007	1585	10	60	260	multi-exon	FALSE	canonical	0	0	1097	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3656_CONTIG_1	4	-	1565	10	full-splice_match	FGG	ENST00000404648	1760	10	193	2	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8221_CONTIG_1	10	+	912	4	incomplete-splice_match	CYP2C9	ENST00000260682	1847	9	869	66	internal_fragment	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	158	613	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8380_CONTIG_1	1	-	1194	7	novel_not_in_catalog	SERPINC1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	109	2	NA	3	0	TRUE	NA	NA	0	C	coding	356	1068	69	1136	50	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8712_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_854_CONTIG_1	14	-	1328	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	76	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	5	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4426_CONTIG_1	12	-	1079	8	full-splice_match	RPLP0	ENST00000392514	1218	8	104	35	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	74	1024	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4134_CONTIG_1	14	-	1010	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	447	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	42	1010	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1618_CONTIG_1	8	-	1748	10	full-splice_match	DPYS	ENST00000351513	2127	10	313	66	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	coding	445	1335	43	1377	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7068_CONTIG_1	16	+	1181	4	incomplete-splice_match	HP	ENST00000398131	1252	5	55	16	internal_fragment	FALSE	canonical	0	0	254	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	347	1030	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_280_CONTIG_1	5	-	1320	2	full-splice_match	CD14	ENST00000302014	1886	2	528	38	multi-exon	FALSE	canonical	0	0	105	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	103	1227	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5487_CONTIG_1	5	-	891	5	novel_not_in_catalog	IRF1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	240	2	NA	0	0	TRUE	NA	NA	0	A	coding	198	594	246	839	35	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_29_CONTIG_1	5	+	404	3	full-splice_match	UQCRQ	ENST00000378670	839	3	91	344	multi-exon	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6426_CONTIG_1	1	-	1966	2	full-splice_match	CRP	ENST00000255030	2015	2	0	49	multi-exon	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	coding	224	672	105	776	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_438_CONTIG_1	15	-	1335	6	full-splice_match	SEC11A	ENST00000268220	1656	6	325	-4	multi-exon	FALSE	canonical	0	0	367	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_640_CONTIG_1	4	-	1198	9	full-splice_match	AGA	ENST00000264595	2107	9	120	789	multi-exon	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	A	coding	346	1038	9	1046	35	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8038_CONTIG_1	16	-	450	5	full-splice_match	RPS15A	ENST00000563390	525	5	49	26	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	31	420	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2969_CONTIG_1	14	-	813	4	incomplete-splice_match	SERPINA1	ENST00000393087	1622	5	784	25	5prime_fragment	FALSE	canonical	0	0	127	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	211	735	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7929_CONTIG_1	2	+	1101	5	novel_in_catalog	UGT1A8	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	900	2	NA	0	0	FALSE	NA	NA	0	A	coding	241	723	206	928	20	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4469_CONTIG_1	16	-	1202	5	full-splice_match	CFDP1	ENST00000566901	1167	5	-12	-23	multi-exon	FALSE	canonical	0	0	185	2	NA	0	0	FALSE	NA	NA	0	A	coding	217	651	122	772	40	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7720_CONTIG_1	16	+	364	3	full-splice_match	MT1H	ENST00000332374	397	3	24	9	multi-exon	FALSE	canonical	0	0	141	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6567_CONTIG_1	11	-	962	4	incomplete-splice_match	HSPA8	ENST00000453788	2004	8	1037	5	5prime_fragment	FALSE	canonical	0	0	360	2	NA	0	0	FALSE	NA	NA	0	C	coding	84	252	468	719	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3534_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	50	162	multi-exon	FALSE	canonical	0	0	1892	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3321_CONTIG_1	1	-	691	2	antisense	novelGene_THRAP3_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	270	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1595_CONTIG_1	4	+	2036	15	full-splice_match	ALB	ENST00000295897	2263	15	50	177	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_953_CONTIG_1	4	+	2009	15	full-splice_match	ALB	ENST00000295897	2263	15	48	206	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1746_CONTIG_1	11	-	897	4	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	57	857	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8188_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_946_CONTIG_1	7	-	1821	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	81	251	multi-exon	FALSE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	C	coding	503	1509	104	1612	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1148_CONTIG_1	10	+	999	2	full-splice_match	ZNF22	ENST00000298299	2551	2	293	1259	multi-exon	FALSE	canonical	0	0	211	2	NA	0	0	FALSE	NA	NA	0	C	coding	224	672	301	972	50	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5656_CONTIG_1	16	+	1198	5	full-splice_match	HP	ENST00000398131	1252	5	17	37	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3956_CONTIG_1	4	+	2010	15	full-splice_match	ALB	ENST00000295897	2263	15	48	205	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1583_CONTIG_1	19	+	404	3	incomplete-splice_match	FTL	ENST00000331825	878	4	341	133	internal_fragment	FALSE	canonical	0	0	241	2	NA	0	0	FALSE	NA	NA	0	C	coding	107	321	71	391	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3477_CONTIG_1	2	-	498	4	full-splice_match	FABP1	ENST00000295834	546	4	54	-6	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	46	426	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5978_CONTIG_1	19	+	1117	2	novel_not_in_catalog	ZFP36	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	26	2	NA	4	0	TRUE	NA	NA	0	C	coding	83	249	303	551	45	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2313_CONTIG_1	3	-	1538	9	full-splice_match	TWF2	ENST00000305533	1718	9	131	49	multi-exon	FALSE	canonical	0	0	138	2	NA	0	0	FALSE	NA	NA	0	A	coding	349	1047	114	1160	20	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8369_CONTIG_1	22	+	417	4	full-splice_match	LGALS1	ENST00000215909	560	4	28	115	multi-exon	FALSE	canonical	0	0	328	2	NA	0	0	FALSE	NA	NA	0	C	coding	116	348	68	415	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3566_CONTIG_1	4	+	2058	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1895	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	35	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6009_CONTIG_1	13	+	750	4	full-splice_match	SAP18	ENST00000607003	2234	4	-4	1488	multi-exon	FALSE	canonical	0	0	341	2	NA	0	0	FALSE	NA	NA	0	A	coding	153	459	37	495	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5587_CONTIG_1	3	+	2064	16	incomplete-splice_match	ITIH3	ENST00000449956	3007	22	702	241	internal_fragment	TRUE	canonical	0	0	1847	2	NA	0	0	FALSE	NA	NA	0	B	coding	596	1788	187	1974	45	0.866	0.134	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1406_CONTIG_1	5	+	1854	5	novel_not_in_catalog	CTNNA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1389	2	NA	0	0	TRUE	NA	NA	0	A	coding	161	483	53	535	45	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2114_CONTIG_1	17	-	1120	8	full-splice_match	APOH	ENST00000205948	1176	8	16	40	multi-exon	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	coding	345	1035	23	1057	60	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8093_CONTIG_1	10	-	860	6	full-splice_match	ARL3	ENST00000260746	3844	6	30	2954	multi-exon	FALSE	canonical	0	0	105	2	NA	1	0	FALSE	NA	NA	0	A	coding	182	546	103	648	20	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1109_CONTIG_1	5	-	2035	14	full-splice_match	F12	ENST00000253496	2049	14	10	4	multi-exon	FALSE	canonical	0	0	96	2	NA	0	0	FALSE	NA	NA	0	C	coding	615	1845	40	1884	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7517_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	7	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6564_CONTIG_1	10	+	1624	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	43	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2059_CONTIG_1	2	+	1135	3	genic_intron	novelGene_173	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2582_CONTIG_1	9	-	619	7	full-splice_match	RPL12	ENST00000361436	633	7	0	14	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	165	495	89	583	20	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1134_CONTIG_1	9	-	1218	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	44	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5935_CONTIG_1	11	-	987	4	full-splice_match	APOA1	ENST00000236850	1227	4	237	3	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	130	930	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5053_CONTIG_1	16	+	395	3	full-splice_match	MT2A	ENST00000245185	786	3	387	4	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7258_CONTIG_1	3	+	763	5	full-splice_match	SLC51A	ENST00000484407	1066	5	248	55	multi-exon	TRUE	canonical	0	0	450	2	NA	1	0	FALSE	NA	NA	0	A	coding	188	564	21	584	20	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6476_CONTIG_1	6	+	712	6	full-splice_match	RPL10A	ENST00000322203	716	6	-4	8	multi-exon	FALSE	canonical	0	0	514	2	NA	1	0	FALSE	NA	NA	0	C	coding	217	651	32	682	0	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7987_CONTIG_1	7	-	662	6	incomplete-splice_match	PON3	ENST00000482624	1238	7	-38	614	internal_fragment	FALSE	canonical	0	0	130	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	57	662	55	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7249_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2432_CONTIG_1	14	-	986	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-15	479	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	coding	312	936	50	985	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2900_CONTIG_1	X	+	1247	9	incomplete-splice_match	DIAPH2	ENST00000373049	3730	27	2109	374	internal_fragment	FALSE	canonical	0	0	1082	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4729_CONTIG_1	11	+	432	3	incomplete-splice_match	SERPING1	ENST00000340687	1719	8	506	781	internal_fragment	FALSE	canonical	0	0	241	2	NA	0	0	FALSE	NA	NA	0	C	coding	133	399	34	432	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7723_CONTIG_1	4	-	381	4	full-splice_match	NDUFC1	ENST00000265500	411	4	-12	42	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1663_CONTIG_1	5	-	1770	4	incomplete-splice_match	SEPP1	ENST00000511224	1853	6	274	-191	5prime_fragment	FALSE	canonical	0	0	28	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8351_CONTIG_1	4	-	1113	4	full-splice_match	CXCL2	ENST00000508487	1218	4	97	8	multi-exon	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	C	coding	107	321	77	397	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1_CONTIG_1	1	-	936	3	novel_in_catalog	AGT	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	270	2	NA	0	0	FALSE	NA	NA	0	C	coding	198	594	8	601	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4684_CONTIG_1	4	+	1849	8	full-splice_match	FGB	ENST00000302068	1975	8	55	71	multi-exon	FALSE	canonical	0	0	1252	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4115_CONTIG_1	17	+	602	4	full-splice_match	CISD3	ENST00000439660	2074	4	120	1352	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	5	385	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_569_CONTIG_1	19	+	1137	8	incomplete-splice_match	HPN	ENST00000392226	1783	14	610	36	internal_fragment	FALSE	canonical	0	0	850	2	NA	0	0	FALSE	NA	NA	0	B	coding	82	246	641	886	30	0.69	0.31	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2944_CONTIG_1	4	-	2253	8	novel_not_in_catalog	ADH1B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	86	2	NA	2	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5044_CONTIG_1	4	+	1466	6	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1092	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5616_CONTIG_1	4	-	994	9	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	125	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_457_CONTIG_1	16	+	395	3	full-splice_match	MT2A	ENST00000245185	786	3	388	3	multi-exon	FALSE	canonical	0	0	163	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8673_CONTIG_1	4	+	1674	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	214	multi-exon	FALSE	canonical	0	0	1357	2	NA	3	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1156_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	50	158	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8519_CONTIG_1	3	+	769	5	novel_not_in_catalog	EXOG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	A	coding	99	297	59	355	45	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7456_CONTIG_1	18	-	760	5	full-splice_match	CYB5A	ENST00000340533	834	5	72	2	multi-exon	FALSE	canonical	0	0	198	2	NA	1	0	FALSE	NA	NA	0	C	coding	134	402	70	471	10	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6170_CONTIG_1	9	-	1319	3	full-splice_match	BAAT	ENST00000395051	2252	3	221	712	multi-exon	FALSE	canonical	0	0	316	2	NA	0	0	FALSE	NA	NA	0	C	coding	348	1044	61	1104	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7605_CONTIG_1	11	-	1188	4	full-splice_match	UBE2L6	ENST00000287156	1354	4	137	29	multi-exon	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	72	518	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4104_CONTIG_1	4	+	2205	15	full-splice_match	ALB	ENST00000295897	2263	15	51	7	multi-exon	FALSE	canonical	0	0	1891	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7972_CONTIG_1	6	-	653	6	full-splice_match	CUTA	ENST00000607266	661	6	3	5	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	A	coding	156	468	88	555	0	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6150_CONTIG_1	11	-	1708	5	novel_in_catalog	INS-IGF2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	B	coding	108	324	600	923	65	0.614	0.386	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8561_CONTIG_1	9	-	1257	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	5	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8206_CONTIG_1	6	+	1601	8	full-splice_match	PCMT1	ENST00000367380	1733	8	30	102	multi-exon	FALSE	canonical	0	0	898	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2474_CONTIG_1	3	+	1363	11	full-splice_match	KNG1	ENST00000287611	1720	11	134	223	multi-exon	FALSE	canonical	0	0	1336	2	NA	0	0	FALSE	NA	NA	0	C	coding	410	1230	134	1363	25	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5187_CONTIG_1	22	-	1101	7	novel_not_in_catalog	GUCD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	192	2	NA	0	0	TRUE	NA	NA	0	A	coding	239	717	150	866	15	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4815_CONTIG_1	7	-	1124	4	full-splice_match	AZGP1	ENST00000292401	1307	4	116	67	multi-exon	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	31	915	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5267_CONTIG_1	9	-	1535	9	full-splice_match	ALDOB	ENST00000374855	2451	9	52	864	multi-exon	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	74	1165	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_591_CONTIG_1	14	+	2147	10	full-splice_match	PCK2	ENST00000216780	2357	10	175	35	multi-exon	FALSE	canonical	0	0	1561	2	NA	0	0	FALSE	NA	NA	0	C	coding	640	1920	94	2013	40	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1404_CONTIG_1	4	+	2047	15	full-splice_match	ALB	ENST00000295897	2263	15	48	168	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3441_CONTIG_1	1	+	870	2	full-splice_match	APCS	ENST00000255040	926	2	0	56	multi-exon	FALSE	canonical	0	0	161	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	98	766	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8740_CONTIG_1	9	-	1246	10	full-splice_match	AMBP	ENST00000265132	1434	10	173	15	multi-exon	FALSE	canonical	0	0	207	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	91	1146	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2088_CONTIG_1	15	+	1672	12	full-splice_match	MORF4L1	ENST00000426013	1880	12	201	7	multi-exon	FALSE	canonical	0	0	928	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1825_CONTIG_1	19	+	1426	6	full-splice_match	FCGRT	ENST00000426395	1559	6	130	3	multi-exon	FALSE	canonical	0	0	1105	2	NA	0	0	FALSE	NA	NA	0	A	coding	365	1095	118	1212	25	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4803_CONTIG_1	10	+	2545	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	-685	multi-exon	FALSE	canonical	0	0	1316	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1116_CONTIG_1	19	-	1598	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	166	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8596_CONTIG_1	1	-	1166	2	full-splice_match	NR0B2	ENST00000254227	1156	2	-11	1	multi-exon	FALSE	canonical	0	0	569	2	NA	0	0	FALSE	NA	NA	0	A	coding	257	771	38	808	20	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_229_CONTIG_1	10	+	1644	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	23	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3591_CONTIG_1	17	-	884	4	full-splice_match	H3F3B	ENST00000254810	2705	4	-1	1822	multi-exon	FALSE	canonical	0	0	124	2	NA	0	0	FALSE	NA	NA	0	C	coding	136	408	135	542	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8117_CONTIG_1	6	+	2629	19	full-splice_match	PLG	ENST00000308192	2741	19	50	62	multi-exon	FALSE	canonical	0	0	2284	2	NA	0	0	FALSE	NA	NA	0	C	coding	810	2430	14	2443	40	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_55_CONTIG_1	11	-	629	6	incomplete-splice_match	HPX	ENST00000265983	1652	10	77	946	internal_fragment	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	25	627	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1237_CONTIG_1	14	-	938	5	full-splice_match	CIDEB	ENST00000554411	1602	5	333	331	multi-exon	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	A	coding	219	657	73	729	10	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1055_CONTIG_1	1	-	2003	11	full-splice_match	CERS2	ENST00000368954	2504	11	335	166	multi-exon	FALSE	canonical	0	0	50	2	NA	0	0	FALSE	NA	NA	0	C	coding	380	1140	52	1191	40	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1031_CONTIG_1	4	+	1648	8	full-splice_match	FGB	ENST00000302068	1975	8	59	268	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7197_CONTIG_1	1	-	2001	6	full-splice_match	APH1A	ENST00000360244	2353	6	314	38	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	247	741	180	920	25	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6126_CONTIG_1	6	-	816	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	109	multi-exon	FALSE	canonical	0	0	32	2	NA	1	0	FALSE	NA	NA	0	C	coding	222	666	63	728	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_697_CONTIG_1	4	+	1136	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	342	5	internal_fragment	FALSE	canonical	0	0	976	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	87	950	35	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8622_CONTIG_1	19	+	818	4	full-splice_match	FTL	ENST00000331825	878	4	8	52	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7606_CONTIG_1	1	-	1032	8	full-splice_match	FCN3	ENST00000270879	1030	8	0	-2	multi-exon	FALSE	canonical	0	0	97	2	NA	1	0	FALSE	NA	NA	0	C	coding	299	897	7	903	20	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4021_CONTIG_1	11	-	898	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	1	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1317_CONTIG_1	19	+	1434	4	full-splice_match	FAM32A	ENST00000263384	1455	4	-5	26	multi-exon	FALSE	canonical	0	0	300	2	NA	1	0	FALSE	NA	NA	0	C	coding	112	336	31	366	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4930_CONTIG_1	1	+	1340	7	novel_not_in_catalog	PRPF38B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	891	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8635_CONTIG_1	4	+	1911	8	full-splice_match	FGB	ENST00000302068	1975	8	59	5	multi-exon	FALSE	canonical	0	0	1248	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3405_CONTIG_1	14	-	1468	7	full-splice_match	CCNB1IP1	ENST00000358932	1479	7	9	2	multi-exon	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	A	coding	277	831	457	1287	20	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1964_CONTIG_1	1	+	1215	6	full-splice_match	ATP1B1	ENST00000367815	1883	6	372	296	multi-exon	FALSE	canonical	0	0	783	2	NA	1	0	FALSE	NA	NA	0	A	coding	303	909	136	1044	55	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3255_CONTIG_1	5	-	2013	5	full-splice_match	SEPP1	ENST00000514985	2243	5	189	41	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.352	0.648	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8099_CONTIG_1	7	+	1387	4	full-splice_match	IGFBP1	ENST00000275525	1653	4	253	13	multi-exon	FALSE	canonical	0	0	691	2	NA	1	0	FALSE	NA	NA	0	C	coding	259	777	44	820	25	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_615_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	6	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3260_CONTIG_1	2	+	280	3	novel_in_catalog	CPS1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	189	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.454	0.546	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5379_CONTIG_1	15	+	1024	4	novel_in_catalog	SCG5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	474	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3244_CONTIG_1	11	-	697	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	202	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	219	657	39	695	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7567_CONTIG_1	3	+	208	3	full-splice_match	RPL35A	ENST00000496582	579	3	1	370	multi-exon	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6199_CONTIG_1	10	+	855	3	incomplete-splice_match	FBXL15	ENST00000369956	2344	4	1443	46	internal_fragment	TRUE	canonical	0	0	568	2	NA	0	0	FALSE	NA	NA	0	A	coding	12	36	720	755	10	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1001_CONTIG_1	1	-	474	4	full-splice_match	APOA2	ENST00000367990	474	4	0	0	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5486_CONTIG_1	X	-	1981	3	full-splice_match	FAM156A	ENST00000356333	2537	3	126	430	multi-exon	FALSE	canonical	0	0	866	2	NA	2	0	FALSE	NA	NA	0	A	coding	196	588	1128	1715	15	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4202_CONTIG_1	3	+	1674	7	full-splice_match	HRG	ENST00000232003	2015	7	62	279	multi-exon	FALSE	canonical	0	0	759	2	NA	0	0	FALSE	NA	NA	0	C	coding	525	1575	19	1593	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1099_CONTIG_1	16	-	948	5	incomplete-splice_match	LDHD	ENST00000450168	1966	11	960	58	5prime_fragment	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	A	coding	38	114	430	543	20	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6881_CONTIG_1	4	+	1957	15	full-splice_match	ALB	ENST00000295897	2263	15	50	256	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_257_CONTIG_1	X	-	861	7	full-splice_match	RPS4X	ENST00000316084	1526	7	82	583	multi-exon	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	C	coding	263	789	24	812	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_406_CONTIG_1	1	-	398	2	incomplete-splice_match	CREG1	ENST00000370509	1974	4	3	1573	internal_fragment	FALSE	canonical	0	0	377	2	NA	0	0	FALSE	NA	NA	0	A	coding	125	375	24	398	30	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2663_CONTIG_1	4	+	1902	15	full-splice_match	ALB	ENST00000295897	2263	15	48	313	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4156_CONTIG_1	1	+	1174	3	novel_in_catalog	RP11-164O23.7	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	798	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3529_CONTIG_1	11	+	1405	12	novel_not_in_catalog	ACAT1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1071	2	NA	2	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4740_CONTIG_1	16	+	1231	5	full-splice_match	HP	ENST00000398131	1252	5	17	4	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2913_CONTIG_1	14	-	978	7	full-splice_match	FKBP3	ENST00000396062	1346	7	33	335	multi-exon	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4009_CONTIG_1	11	-	1489	10	full-splice_match	HPX	ENST00000265983	1652	10	77	86	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8485_CONTIG_1	5	+	2428	14	novel_not_in_catalog	CANX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1779	2	NA	0	0	FALSE	NA	NA	0	B	coding	549	1647	184	1830	35	0.854	0.146	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5237_CONTIG_1	11	+	487	4	full-splice_match	APOC3	ENST00000227667	550	4	15	48	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5321_CONTIG_1	12	-	1477	5	full-splice_match	RND1	ENST00000309739	1681	5	26	178	multi-exon	FALSE	canonical	0	0	225	2	NA	0	0	FALSE	NA	NA	0	C	coding	232	696	106	801	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7120_CONTIG_1	18	+	614	4	full-splice_match	TTR	ENST00000237014	957	4	151	192	multi-exon	FALSE	canonical	0	0	362	2	NA	2	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4158_CONTIG_1	14	+	1825	5	novel_not_in_catalog	SERPINA5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1081	2	NA	0	0	FALSE	NA	NA	0	C	coding	365	1095	44	1138	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5666_CONTIG_1	7	-	1194	6	incomplete-splice_match	TFR2	ENST00000544242	2191	14	932	65	5prime_fragment	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	B	coding	235	705	120	824	15	0.602	0.398	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3135_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	48	164	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7999_CONTIG_1	1	+	1880	12	novel_not_in_catalog	PRRC2C	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1520	2	NA	0	0	FALSE	NA	NA	0	B	coding	540	1620	261	1880	55	0.91	0.09	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5597_CONTIG_1	3	-	1844	4	full-splice_match	CMTM6	ENST00000205636	3863	4	587	1432	multi-exon	FALSE	canonical	0	0	214	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1260_CONTIG_1	6	+	1446	11	novel_not_in_catalog	BCKDHB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1195	2	NA	1	0	FALSE	NA	NA	0	A	coding	103	309	876	1184	30	0.56	0.44	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6102_CONTIG_1	11	-	434	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	465	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	39	434	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_303_CONTIG_1	3	-	457	4	full-splice_match	RPL32	ENST00000429711	2117	4	46	1614	multi-exon	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	A	coding	134	402	55	456	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3123_CONTIG_1	12	+	933	4	full-splice_match	MGST1	ENST00000396210	914	4	-19	0	multi-exon	FALSE	canonical	0	0	324	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6132_CONTIG_1	5	-	809	6	novel_not_in_catalog	CHD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	120	2	NA	0	0	TRUE	NA	NA	0	A	coding	159	477	333	809	60	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5585_CONTIG_1	6	-	1663	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	84	multi-exon	FALSE	canonical	0	0	33	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	40	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6972_CONTIG_1	16	-	417	5	full-splice_match	RPS15A	ENST00000563390	525	5	49	59	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	129	387	31	417	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7178_CONTIG_1	12	+	2138	10	novel_in_catalog	RNF10	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1568	2	NA	0	0	FALSE	NA	NA	0	A	coding	295	885	758	1642	30	0.38	0.62	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5740_CONTIG_1	4	+	1760	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	128	multi-exon	FALSE	canonical	0	0	1357	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6193_CONTIG_1	X	+	1067	5	full-splice_match	EBP	ENST00000495186	1775	5	704	4	multi-exon	FALSE	canonical	0	0	588	2	NA	1	0	FALSE	NA	NA	0	C	coding	230	690	120	809	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2205_CONTIG_1	12	+	644	3	full-splice_match	DYNLL1	ENST00000392508	697	3	22	31	multi-exon	FALSE	canonical	0	0	256	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5186_CONTIG_1	16	+	673	5	full-splice_match	COX4I1	ENST00000253452	708	5	8	27	multi-exon	FALSE	canonical	0	0	435	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	177	569	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1774_CONTIG_1	13	-	1962	5	full-splice_match	N4BP2L1	ENST00000380139	2141	5	3	176	multi-exon	FALSE	canonical	0	0	227	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4866_CONTIG_1	1	-	670	4	incomplete-splice_match	SELENBP1	ENST00000455397	1521	11	850	1	5prime_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	84	252	186	437	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7176_CONTIG_1	6	+	718	6	full-splice_match	RPL10A	ENST00000322203	716	6	-4	2	multi-exon	FALSE	canonical	0	0	514	2	NA	0	0	FALSE	NA	NA	0	C	coding	217	651	32	682	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8382_CONTIG_1	12	-	2284	19	incomplete-splice_match	A2M	ENST00000318602	4844	36	2521	39	5prime_fragment	FALSE	canonical	0	0	27	2	NA	0	0	FALSE	NA	NA	0	B	coding	677	2031	179	2209	35	0.638	0.362	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8184_CONTIG_1	6	+	404	5	full-splice_match	RPS18	ENST00000496813	642	5	0	238	multi-exon	FALSE	canonical	0	0	312	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	22	402	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_960_CONTIG_1	7	+	708	5	full-splice_match	ZNHIT1	ENST00000305105	1225	5	513	4	multi-exon	FALSE	canonical	0	0	458	2	NA	1	0	FALSE	NA	NA	0	A	coding	154	462	16	477	10	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4876_CONTIG_1	11	-	1284	10	novel_not_in_catalog	YIF1A	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	181	2	NA	0	0	TRUE	NA	NA	0	C	coding	204	612	151	762	15	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8373_CONTIG_1	2	+	604	5	full-splice_match	RPS27A	ENST00000404735	796	5	33	159	multi-exon	FALSE	canonical	0	0	435	2	NA	1	0	FALSE	NA	NA	0	C	coding	156	468	115	582	40	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2727_CONTIG_1	6	-	1733	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	14	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1364_CONTIG_1	4	+	1119	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	260	104	internal_fragment	FALSE	canonical	0	0	1058	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	169	1032	25	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3706_CONTIG_1	4	-	1577	12	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	122	2	NA	0	0	TRUE	NA	NA	0	C	coding	437	1311	45	1355	45	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6221_CONTIG_1	2	+	1947	6	novel_not_in_catalog	SEPT2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	965	2	NA	1	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4005_CONTIG_1	7	-	1091	7	full-splice_match	TMEM176B	ENST00000326442	1129	7	21	17	multi-exon	FALSE	canonical	0	0	46	2	NA	1	0	FALSE	NA	NA	0	C	coding	270	810	52	861	30	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4892_CONTIG_1	11	-	1091	4	full-splice_match	CFL1	ENST00000308162	1234	4	153	-10	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	82	579	60	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4014_CONTIG_1	16	+	1083	3	full-splice_match	HP	ENST00000566821	3024	3	1925	16	multi-exon	FALSE	canonical	0	0	156	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	249	932	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3005_CONTIG_1	7	-	1106	7	full-splice_match	TMEM176B	ENST00000326442	1129	7	15	8	multi-exon	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	C	coding	270	810	58	867	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7892_CONTIG_1	9	-	1759	3	full-splice_match	BAAT	ENST00000395051	2252	3	227	266	multi-exon	FALSE	canonical	0	0	310	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2251_CONTIG_1	4	+	772	7	novel_not_in_catalog	RPS3A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	685	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5072_CONTIG_1	X	-	756	7	incomplete-splice_match	UPF3B	ENST00000345865	2335	10	-7	1586	internal_fragment	FALSE	canonical	0	0	233	2	NA	0	0	FALSE	NA	NA	0	A	coding	226	678	78	755	55	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8005_CONTIG_1	2	+	1150	10	incomplete-splice_match	ATIC	ENST00000443953	2187	16	693	344	internal_fragment	FALSE	canonical	0	0	1110	2	NA	0	0	FALSE	NA	NA	0	A	coding	357	1071	79	1149	20	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2862_CONTIG_1	21	-	1016	9	novel_in_catalog	FTCD	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	B	coding	169	507	487	993	0	0.69	0.31	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3306_CONTIG_1	17	-	905	6	full-splice_match	SAT2	ENST00000269298	946	6	41	0	multi-exon	FALSE	canonical	0	0	245	2	NA	0	0	FALSE	NA	NA	0	C	coding	170	510	180	689	0	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3352_CONTIG_1	5	-	1566	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	490	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5811_CONTIG_1	4	+	828	7	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	1100	3prime_fragment	FALSE	canonical	0	0	754	2	NA	0	0	FALSE	NA	NA	0	C	coding	262	786	42	827	35	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4995_CONTIG_1	7	+	1772	13	incomplete-splice_match	TAX1BP1	ENST00000265393	2478	17	74	632	3prime_fragment	TRUE	canonical	0	0	1746	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.698	0.302	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4119_CONTIG_1	14	-	1655	11	novel_not_in_catalog	NDRG2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	76	2	NA	0	0	TRUE	NA	NA	0	B	coding	213	639	115	753	45	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5310_CONTIG_1	4	-	1987	12	novel_not_in_catalog	CENPC	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	516	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.222	0.778	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7703_CONTIG_1	10	+	1635	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	32	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1065_CONTIG_1	2	-	1533	6	novel_in_catalog	RTN4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	209	2	NA	4	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2119_CONTIG_1	4	-	1686	13	full-splice_match	GC	ENST00000273951	1972	13	286	0	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5239_CONTIG_1	3	+	2193	17	full-splice_match	TF	ENST00000402696	2968	17	437	338	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5805_CONTIG_1	4	+	1978	15	full-splice_match	ALB	ENST00000295897	2263	15	50	235	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6091_CONTIG_1	2	+	502	3	incomplete-splice_match	BOK	ENST00000318407	2650	5	607	1541	internal_fragment	TRUE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	B	coding	68	204	128	331	10	0.484	0.516	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2631_CONTIG_1	12	-	1445	9	full-splice_match	MLF2	ENST00000203630	1958	9	441	72	multi-exon	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	C	coding	248	744	205	948	10	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6399_CONTIG_1	4	+	2044	15	full-splice_match	ALB	ENST00000295897	2263	15	49	170	multi-exon	FALSE	canonical	0	0	1893	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	45	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7247_CONTIG_1	4	+	2040	15	full-splice_match	ALB	ENST00000295897	2263	15	50	173	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	55	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5188_CONTIG_1	7	-	2039	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	81	33	multi-exon	FALSE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4505_CONTIG_1	11	-	1556	10	full-splice_match	HPX	ENST00000265983	1652	10	74	22	multi-exon	FALSE	canonical	0	0	110	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	28	1413	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4455_CONTIG_1	22	+	2281	13	novel_not_in_catalog	SGSM3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1645	2	NA	1	0	FALSE	NA	NA	0	A	coding	317	951	229	1179	30	0.556	0.444	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1046_CONTIG_1	9	+	410	3	incomplete-splice_match	ASS1	ENST00000372386	667	6	278	-21	internal_fragment	FALSE	canonical	0	0	186	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1436_CONTIG_1	1	-	283	4	full-splice_match	APOA2	ENST00000367990	474	4	0	191	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_577_CONTIG_1	3	+	931	4	full-splice_match	RPL15	ENST00000307839	2730	4	605	1194	multi-exon	FALSE	canonical	0	0	343	2	NA	0	0	FALSE	NA	NA	0	C	coding	204	612	35	646	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2430_CONTIG_1	7	-	867	3	novel_not_in_catalog	PDIA4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	107	2	NA	0	0	TRUE	NA	NA	0	B	coding	48	144	281	424	15	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4428_CONTIG_1	14	-	1125	2	novel_not_in_catalog	DCAF5	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	341	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4190_CONTIG_1	22	-	838	8	novel_in_catalog	IFT27	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	92	2	NA	0	0	FALSE	NA	NA	0	A	coding	186	558	180	737	20	0.29	0.71	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4513_CONTIG_1	7	+	819	6	full-splice_match	BUD31	ENST00000403633	1139	6	317	3	multi-exon	FALSE	canonical	0	0	596	2	NA	0	0	FALSE	NA	NA	0	A	coding	144	432	213	644	10	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3117_CONTIG_1	7	-	1355	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	454	multi-exon	FALSE	canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	35	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7922_CONTIG_1	4	+	1894	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1779	2	NA	1	0	TRUE	NA	NA	0	C	coding	288	864	890	1753	0	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7836_CONTIG_1	4	+	1973	15	full-splice_match	ALB	ENST00000295897	2263	15	50	240	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2799_CONTIG_1	1	+	792	6	incomplete-splice_match	EPHX1	ENST00000272167	1660	9	627	241	internal_fragment	FALSE	canonical	0	0	619	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	87	791	10	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3058_CONTIG_1	19	+	897	5	novel_in_catalog	OAZ1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	630	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.534	0.466	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5171_CONTIG_1	4	+	629	6	incomplete-splice_match	MRPL1	ENST00000315567	1490	9	304	557	3prime_fragment	FALSE	canonical	0	0	583	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2677_CONTIG_1	19	+	986	5	novel_not_in_catalog	CERS4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	595	2	NA	0	0	TRUE	NA	NA	0	A	coding	100	300	315	614	20	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3383_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	48	158	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2344_CONTIG_1	12	-	1961	9	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	107	2	NA	1	0	TRUE	NA	NA	0	C	coding	618	1854	106	1959	30	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1520_CONTIG_1	16	+	1069	3	full-splice_match	HP	ENST00000566821	3024	3	1924	31	multi-exon	FALSE	canonical	0	0	157	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	250	933	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4999_CONTIG_1	4	+	705	3	full-splice_match	CISD2	ENST00000273986	2327	3	54	1568	multi-exon	FALSE	canonical	0	0	371	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3755_CONTIG_1	15	-	1813	7	incomplete-splice_match	GATM	ENST00000396659	2597	9	778	6	5prime_fragment	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.286	0.714	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5635_CONTIG_1	19	+	865	4	full-splice_match	FTL	ENST00000331825	878	4	8	5	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8685_CONTIG_1	9	-	1262	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	0	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	10	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7004_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	50	157	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4376_CONTIG_1	18	-	1198	8	full-splice_match	TXNL1	ENST00000217515	6894	8	60	5636	multi-exon	FALSE	canonical	0	0	243	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6789_CONTIG_1	3	+	2259	2	genic_intron	novelGene_438	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	817	2	NA	3	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	85	0.252	0.748	POS	TRUE	Artifact
SAMPLE_1_MOLECULE_2440_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5727_CONTIG_1	10	-	1462	6	full-splice_match	BNIP3	ENST00000368636	1160	6	-4	-298	multi-exon	FALSE	canonical	0	0	175	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7496_CONTIG_1	11	+	1101	3	novel_in_catalog	SAA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	854	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	625	990	25	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2658_CONTIG_1	5	-	1183	2	antisense	novelGene_PTMAP2_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	1142	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.45	0.55	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1836_CONTIG_1	1	+	727	4	incomplete-splice_match	EPHX1	ENST00000272167	1660	9	75	858	internal_fragment	FALSE	canonical	0	0	597	2	NA	0	0	FALSE	NA	NA	0	C	coding	240	720	6	725	10	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5224_CONTIG_1	1	-	1595	8	novel_in_catalog	SERPINC1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	404	1212	382	1593	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8446_CONTIG_1	6	+	386	2	full-splice_match	HULC	ENST00000503668	556	2	132	38	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8642_CONTIG_1	4	+	1192	9	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	734	3prime_fragment	FALSE	canonical	0	0	1097	2	NA	0	0	FALSE	NA	NA	0	C	coding	384	1152	40	1191	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7631_CONTIG_1	9	-	1518	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	884	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6917_CONTIG_1	11	-	1031	6	full-splice_match	AHNAK	ENST00000257247	1024	6	-10	3	multi-exon	FALSE	canonical	0	0	147	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	247	693	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_455_CONTIG_1	6	+	2441	18	full-splice_match	CFB	ENST00000425368	2862	18	386	35	multi-exon	FALSE	canonical	0	0	2266	2	NA	0	0	FALSE	NA	NA	0	C	coding	764	2292	128	2419	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1647_CONTIG_1	4	+	1966	15	full-splice_match	ALB	ENST00000295897	2263	15	50	247	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1208_CONTIG_1	12	+	1512	5	full-splice_match	HSD17B6	ENST00000322165	1512	5	-4	4	multi-exon	FALSE	canonical	0	0	850	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	115	1065	10	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2744_CONTIG_1	5	-	2037	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	19	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2235_CONTIG_1	22	+	2105	5	full-splice_match	SERPIND1	ENST00000215727	2437	5	248	84	multi-exon	FALSE	canonical	0	0	1343	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	36	1532	5	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1334_CONTIG_1	20	+	1584	13	novel_not_in_catalog	GNAS	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1193	2	NA	0	0	TRUE	NA	NA	0	A	coding	379	1137	201	1337	65	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7495_CONTIG_1	6	+	1810	15	incomplete-splice_match	CFB	ENST00000425368	2862	18	1022	30	internal_fragment	FALSE	canonical	0	0	1630	2	NA	0	0	FALSE	NA	NA	0	C	coding	542	1626	158	1783	40	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2035_CONTIG_1	11	-	888	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	11	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5411_CONTIG_1	16	+	1100	3	full-splice_match	HP	ENST00000566821	3024	3	1923	1	multi-exon	FALSE	canonical	0	0	158	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	251	934	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7845_CONTIG_1	11	-	1570	10	full-splice_match	HPX	ENST00000265983	1652	10	77	5	multi-exon	FALSE	canonical	0	0	107	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	25	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2891_CONTIG_1	1	-	1963	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-8	473	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	C	coding	508	1524	59	1582	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6034_CONTIG_1	17	-	1622	8	full-splice_match	VTN	ENST00000226218	2149	8	515	12	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3801_CONTIG_1	19	+	667	2	incomplete-splice_match	GADD45B	ENST00000215631	1373	4	465	241	internal_fragment	FALSE	canonical	0	0	136	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2613_CONTIG_1	6	+	1356	3	novel_in_catalog	PLG	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	256	2	NA	1	0	FALSE	NA	NA	0	C	coding	4	12	404	415	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5206_CONTIG_1	17	-	1597	8	full-splice_match	VTN	ENST00000226218	2149	8	515	37	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2348_CONTIG_1	4	+	1912	8	full-splice_match	FGB	ENST00000302068	1975	8	55	8	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2216_CONTIG_1	3	+	611	5	incomplete-splice_match	ITIH1	ENST00000405128	1122	6	327	184	internal_fragment	FALSE	canonical	0	0	516	2	NA	0	0	FALSE	NA	NA	0	C	coding	78	234	377	610	25	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1706_CONTIG_1	3	+	1542	11	novel_in_catalog	TF	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1372	2	NA	1	0	FALSE	NA	NA	0	C	coding	424	1272	133	1404	70	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2550_CONTIG_1	19	+	1163	4	full-splice_match	APOE	ENST00000252486	1208	4	42	3	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6375_CONTIG_1	1	-	1421	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	72	101	multi-exon	FALSE	canonical	0	0	88	2	NA	1	0	FALSE	NA	NA	0	C	coding	458	1374	48	1421	25	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5618_CONTIG_1	12	-	1400	6	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	25	2	NA	2	0	TRUE	NA	NA	0	C	coding	234	702	616	1317	40	0.952	0.048	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1275_CONTIG_1	4	+	1266	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	209	8	internal_fragment	FALSE	canonical	0	0	1109	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	220	1083	40	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5140_CONTIG_1	4	+	1979	15	full-splice_match	ALB	ENST00000295897	2263	15	50	234	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5091_CONTIG_1	19	-	2335	21	incomplete-splice_match	C3	ENST00000245907	5263	41	2785	143	5prime_fragment	FALSE	canonical	0	0	104	2	NA	1	0	FALSE	NA	NA	0	B	coding	726	2178	120	2297	20	0.584	0.416	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4295_CONTIG_1	11	-	804	2	incomplete-splice_match	SMCO4	ENST00000298966	1104	3	277	23	5prime_fragment	FALSE	canonical	0	0	29	2	NA	1	0	FALSE	NA	NA	0	A	coding	17	51	376	426	45	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1776_CONTIG_1	1	+	1994	5	full-splice_match	CYR61	ENST00000451137	2290	5	0	296	multi-exon	FALSE	canonical	0	0	1067	2	NA	0	0	FALSE	NA	NA	0	A	coding	381	1143	225	1367	40	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_884_CONTIG_1	14	+	2089	5	full-splice_match	SERPINA5	ENST00000554866	2211	5	68	54	multi-exon	FALSE	canonical	0	0	1084	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	47	1264	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_398_CONTIG_1	14	+	1036	8	novel_in_catalog	METTL17	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1015	2	NA	1	0	FALSE	NA	NA	0	A	coding	214	642	393	1034	15	0.284	0.716	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4608_CONTIG_1	X	+	1548	2	full-splice_match	GJB1	ENST00000374022	1904	2	38	318	multi-exon	FALSE	canonical	0	0	41	2	NA	1	0	FALSE	NA	NA	0	C	coding	283	849	58	906	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2850_CONTIG_1	6	-	2053	3	incomplete-splice_match	VNN1	ENST00000367928	3106	7	1015	38	5prime_fragment	FALSE	canonical	0	0	187	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.478	0.522	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6598_CONTIG_1	19	-	1354	13	incomplete-splice_match	C3	ENST00000245907	5263	41	3589	320	internal_fragment	FALSE	canonical	0	0	150	2	NA	1	1	FALSE	NA	NA	0	B	coding	436	1308	45	1352	5	0.582	0.418	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1047_CONTIG_1	12	-	1587	8	full-splice_match	SDS	ENST00000257549	1606	8	-1	20	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	128	1108	60	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5412_CONTIG_1	19	+	1162	4	full-splice_match	APOE	ENST00000252486	1208	4	46	0	multi-exon	FALSE	canonical	0	0	301	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	66	1016	0	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4538_CONTIG_1	6	+	334	3	full-splice_match	GTF2H5	ENST00000607778	7481	3	22	7125	multi-exon	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2402_CONTIG_1	17	-	758	4	full-splice_match	GABARAP	ENST00000302386	1634	4	379	497	multi-exon	FALSE	canonical	0	0	151	2	NA	0	0	FALSE	NA	NA	0	C	coding	117	351	62	412	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3777_CONTIG_1	4	+	1988	15	full-splice_match	ALB	ENST00000295897	2263	15	49	226	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	40	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4351_CONTIG_1	19	+	1655	9	novel_not_in_catalog	RAB8A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1225	2	NA	3	0	TRUE	NA	NA	0	A	coding	207	621	17	637	35	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_167_CONTIG_1	9	-	1139	10	incomplete-splice_match	C5	ENST00000223642	5462	41	2010	2313	internal_fragment	FALSE	canonical	0	0	16	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.612	0.388	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7908_CONTIG_1	16	+	1204	4	full-splice_match	HPR	ENST00000228226	1158	4	116	-162	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	356	1039	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3868_CONTIG_1	16	-	2237	6	full-splice_match	ARL6IP1	ENST00000304414	2407	6	134	36	multi-exon	FALSE	canonical	0	0	114	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6090_CONTIG_1	6	-	994	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	-69	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8694_CONTIG_1	18	-	1846	12	full-splice_match	ATP5A1	ENST00000398752	1916	12	68	2	multi-exon	FALSE	canonical	0	0	114	2	NA	1	0	FALSE	NA	NA	0	C	coding	553	1659	55	1713	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4035_CONTIG_1	3	+	1939	15	incomplete-splice_match	TF	ENST00000264998	2143	16	152	52	internal_fragment	FALSE	canonical	0	0	1785	2	NA	0	0	FALSE	NA	NA	0	C	coding	571	1713	105	1817	20	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4578_CONTIG_1	17	-	1112	7	full-splice_match	DERL2	ENST00000158771	4209	7	43	3054	multi-exon	FALSE	canonical	0	0	106	2	NA	0	0	FALSE	NA	NA	0	A	coding	99	297	434	730	25	0.296	0.704	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_263_CONTIG_1	16	+	1239	5	full-splice_match	HP	ENST00000398131	1252	5	14	-1	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_593_CONTIG_1	4	+	1957	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1838	2	NA	0	0	TRUE	NA	NA	0	C	coding	313	939	39	977	5	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2458_CONTIG_1	16	+	1105	3	full-splice_match	HP	ENST00000566821	3024	3	1911	8	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6960_CONTIG_1	4	+	478	6	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	445	2	NA	0	0	TRUE	NA	NA	0	C	coding	42	126	351	476	5	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3291_CONTIG_1	2	+	508	2	novel_not_in_catalog	BIRC6	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	172	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3045_CONTIG_1	4	+	1965	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1803	2	NA	0	0	FALSE	NA	NA	0	C	coding	524	1572	40	1611	35	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4396_CONTIG_1	1	-	2054	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-15	389	multi-exon	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	coding	508	1524	66	1589	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1514_CONTIG_1	3	-	1718	2	genic_intron	novelGene_744	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	327	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5980_CONTIG_1	4	+	2018	15	full-splice_match	ALB	ENST00000295897	2263	15	50	195	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2698_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2704_CONTIG_1	3	+	1547	11	full-splice_match	KNG1	ENST00000287611	1720	11	134	39	multi-exon	FALSE	canonical	0	0	1336	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	134	1414	40	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4722_CONTIG_1	16	+	1089	3	full-splice_match	HP	ENST00000566821	3024	3	1914	21	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	260	943	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1198_CONTIG_1	5	-	1847	13	full-splice_match	HARS	ENST00000504156	3334	13	700	787	multi-exon	TRUE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	A	coding	509	1527	21	1547	30	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1294_CONTIG_1	1	-	1202	7	incomplete-splice_match	EPRS	ENST00000609181	2968	21	1759	7	internal_fragment	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	65	0.64	0.36	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4466_CONTIG_1	10	+	854	6	incomplete-splice_match	CYP2E1	ENST00000252945	1667	9	214	599	internal_fragment	FALSE	canonical	0	0	786	2	NA	0	0	FALSE	NA	NA	0	C	coding	269	807	48	854	25	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_707_CONTIG_1	22	+	1240	4	novel_not_in_catalog	SERPIND1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1136	2	NA	0	0	TRUE	NA	NA	0	C	coding	381	1143	36	1178	40	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4743_CONTIG_1	2	-	810	4	genic	APOB	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	732	2	NA	5	2	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3823_CONTIG_1	17	-	1282	9	full-splice_match	ASGR1	ENST00000269299	1504	9	190	32	multi-exon	FALSE	canonical	0	0	185	2	NA	0	0	FALSE	NA	NA	0	C	coding	291	873	211	1083	45	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2514_CONTIG_1	22	-	1352	7	intergenic	novelGene_308	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	61	2	NA	12	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.238	0.762	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1049_CONTIG_1	6	-	902	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	23	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	63	728	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6726_CONTIG_1	16	+	414	3	full-splice_match	MT1F	ENST00000334350	690	3	261	15	multi-exon	FALSE	canonical	0	0	198	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8550_CONTIG_1	1	-	470	4	full-splice_match	APOA2	ENST00000367990	474	4	0	4	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3270_CONTIG_1	11	+	820	3	incomplete-splice_match	SERPING1	ENST00000531133	1004	6	445	-261	internal_fragment	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	177	531	26	556	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4558_CONTIG_1	4	-	2209	5	full-splice_match	FGA	ENST00000403106	2248	5	22	17	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5984_CONTIG_1	5	+	1624	8	full-splice_match	BHMT2	ENST00000255192	2050	8	52	374	multi-exon	FALSE	canonical	0	0	1024	2	NA	0	0	FALSE	NA	NA	0	C	coding	363	1089	15	1103	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2918_CONTIG_1	19	-	979	10	incomplete-splice_match	C3	ENST00000245907	5263	41	4152	132	5prime_fragment	FALSE	canonical	0	0	61	2	NA	0	0	FALSE	NA	NA	0	B	coding	280	840	91	930	10	0.714	0.286	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3394_CONTIG_1	8	-	1273	9	full-splice_match	LYPLA1	ENST00000316963	2574	9	192	1109	multi-exon	TRUE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.234	0.766	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2336_CONTIG_1	5	-	871	5	full-splice_match	SRA1	ENST00000336283	2165	5	854	440	multi-exon	FALSE	canonical	0	0	29	2	NA	1	0	FALSE	NA	NA	0	A	coding	224	672	5	676	20	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3752_CONTIG_1	11	-	881	3	full-splice_match	APOA1	ENST00000375323	1088	3	205	2	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	23	823	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7081_CONTIG_1	4	+	1549	8	full-splice_match	FGB	ENST00000302068	1975	8	61	365	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7725_CONTIG_1	19	+	1573	5	novel_not_in_catalog	GADD45B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1494	2	NA	0	0	TRUE	NA	NA	0	C	coding	160	480	756	1235	40	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_354_CONTIG_1	2	-	1431	2	antisense	novelGene_PLGLB2_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1135	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_730_CONTIG_1	10	-	500	5	incomplete-splice_match	RBP4	ENST00000371464	1068	6	-9	577	internal_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	139	417	84	500	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4890_CONTIG_1	1	+	303	3	incomplete-splice_match	LMNA	ENST00000515459	757	6	516	-62	internal_fragment	FALSE	canonical	0	0	202	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5577_CONTIG_1	1	-	1260	4	incomplete-splice_match	AGT	ENST00000366667	2291	5	173	858	internal_fragment	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	43	1260	40	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2346_CONTIG_1	17	-	426	4	incomplete-splice_match	APOH	ENST00000577982	707	6	128	153	internal_fragment	FALSE	canonical	0	0	99	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	36	425	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1477_CONTIG_1	3	-	1612	5	full-splice_match	TNFSF10	ENST00000241261	1953	5	77	264	multi-exon	FALSE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1835_CONTIG_1	4	+	2021	15	full-splice_match	ALB	ENST00000295897	2263	15	50	192	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5647_CONTIG_1	1	-	1378	9	full-splice_match	DNAJC8	ENST00000263697	1480	9	-3	105	multi-exon	FALSE	canonical	0	0	108	2	NA	0	0	FALSE	NA	NA	0	C	coding	253	759	31	789	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8414_CONTIG_1	13	+	369	2	full-splice_match	MRP63	ENST00000309594	2246	2	43	1834	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	A	coding	102	306	36	341	30	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5763_CONTIG_1	6	+	426	5	novel_not_in_catalog	PLG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	378	2	NA	0	0	TRUE	NA	NA	0	C	coding	127	381	44	424	15	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3620_CONTIG_1	7	-	1116	5	novel_in_catalog	CYP3A4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_424_CONTIG_1	1	-	457	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	21	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6778_CONTIG_1	19	-	734	5	incomplete-splice_match	SULT2A1	ENST00000222002	1987	6	461	792	5prime_fragment	FALSE	canonical	0	0	24	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3274_CONTIG_1	4	-	2164	5	full-splice_match	FGA	ENST00000403106	2248	5	22	62	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	40	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6437_CONTIG_1	6	+	706	6	full-splice_match	APOM	ENST00000375916	1184	6	444	34	multi-exon	FALSE	canonical	0	0	593	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	53	616	60	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7353_CONTIG_1	12	-	2182	3	incomplete-splice_match	TWF1	ENST00000552521	3012	10	789	41	5prime_fragment	FALSE	canonical	0	0	68	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5144_CONTIG_1	2	-	2218	12	incomplete-splice_match	FN1	ENST00000446046	7952	46	5716	18	5prime_fragment	TRUE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	B	coding	306	918	623	1540	40	0.676	0.324	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3180_CONTIG_1	9	+	1666	9	full-splice_match	DNAJA1	ENST00000330899	2381	9	60	655	multi-exon	FALSE	canonical	0	0	1098	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	124	1314	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6064_CONTIG_1	7	+	994	7	full-splice_match	TMEM176A	ENST00000004103	1261	7	237	30	multi-exon	FALSE	canonical	0	0	730	2	NA	1	0	FALSE	NA	NA	0	C	coding	235	705	65	769	40	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6680_CONTIG_1	17	-	1035	2	genic_intron	novelGene_180	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1058_CONTIG_1	17	-	956	3	novel_in_catalog	ORMDL3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	198	2	NA	0	0	FALSE	NA	NA	0	A	coding	153	459	25	483	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4796_CONTIG_1	9	-	278	2	incomplete-splice_match	C5	ENST00000223642	5462	41	3571	1613	internal_fragment	FALSE	canonical	0	0	117	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.468	0.532	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4307_CONTIG_1	4	-	1521	13	full-splice_match	GC	ENST00000273951	1972	13	286	165	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8437_CONTIG_1	4	-	2089	8	full-splice_match	UBE2D3	ENST00000394801	2368	8	121	158	multi-exon	FALSE	canonical	0	0	236	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8104_CONTIG_1	3	-	1019	8	full-splice_match	DNASE1L3	ENST00000394549	1294	8	322	-47	multi-exon	FALSE	canonical	0	0	136	2	NA	0	0	FALSE	NA	NA	0	A	coding	285	855	56	910	20	0.298	0.702	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_100_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8538_CONTIG_1	4	+	1552	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	540	171	internal_fragment	FALSE	canonical	0	0	1402	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	513	1376	50	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1194_CONTIG_1	4	+	1943	15	full-splice_match	ALB	ENST00000295897	2263	15	48	272	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1781_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	23	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_336_CONTIG_1	8	-	1649	9	full-splice_match	CLU	ENST00000560366	2841	9	107	1085	multi-exon	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	82	1425	35	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3456_CONTIG_1	9	-	891	10	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	77	2	NA	1	2	TRUE	NA	NA	0	C	coding	235	705	161	865	15	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2517_CONTIG_1	14	-	1015	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	442	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7844_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8577_CONTIG_1	12	-	258	2	incomplete-splice_match	RPL6	ENST00000546368	2008	3	30	1720	internal_fragment	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_324_CONTIG_1	9	+	1184	2	genic	SLC1A1	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	980	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_183_CONTIG_1	3	+	2302	17	full-splice_match	TF	ENST00000402696	2968	17	437	229	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8623_CONTIG_1	1	-	1487	4	full-splice_match	C1orf174	ENST00000361605	1666	4	10	169	multi-exon	FALSE	canonical	0	0	104	2	NA	1	0	FALSE	NA	NA	0	A	coding	243	729	90	818	25	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7930_CONTIG_1	3	+	426	4	incomplete-splice_match	TF	ENST00000264998	2143	16	1238	479	internal_fragment	FALSE	canonical	0	0	324	2	NA	0	0	FALSE	NA	NA	0	C	coding	114	342	84	425	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3922_CONTIG_1	4	+	2033	15	full-splice_match	ALB	ENST00000295897	2263	15	50	180	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8540_CONTIG_1	1	-	2320	4	incomplete-splice_match	PPAP2B	ENST00000371250	3292	6	934	38	5prime_fragment	FALSE	canonical	0	0	193	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.436	0.564	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4615_CONTIG_1	1	-	1057	5	incomplete-splice_match	HMGCS2	ENST00000369406	2428	10	-15	1386	internal_fragment	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	coding	330	990	66	1055	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_539_CONTIG_1	22	-	1206	7	full-splice_match	RRP7A	ENST00000323013	3801	7	0	2595	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	A	coding	280	840	17	856	45	0.302	0.698	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2164_CONTIG_1	4	+	326	3	incomplete-splice_match	ALB	ENST00000514786	577	5	173	78	internal_fragment	FALSE	canonical	0	0	278	2	NA	0	0	FALSE	NA	NA	0	C	coding	66	198	127	324	25	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7350_CONTIG_1	14	-	1336	18	novel_not_in_catalog	NDRG2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	33	2	NA	0	0	TRUE	NA	NA	0	B	coding	356	1068	107	1174	20	0.956	0.044	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1306_CONTIG_1	1	+	558	6	novel_not_in_catalog	SCNM1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	408	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6712_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2568_CONTIG_1	4	+	1571	8	full-splice_match	FGB	ENST00000302068	1975	8	57	347	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5124_CONTIG_1	4	-	768	7	incomplete-splice_match	GC	ENST00000503472	1466	12	444	254	internal_fragment	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7704_CONTIG_1	8	-	1159	8	full-splice_match	DERL1	ENST00000259512	3340	8	105	2076	multi-exon	FALSE	canonical	0	0	349	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5313_CONTIG_1	4	+	534	4	incomplete-splice_match	FGB	ENST00000502545	1320	7	-23	809	3prime_fragment	FALSE	canonical	0	0	494	2	NA	1	0	FALSE	NA	NA	0	C	coding	176	528	5	532	50	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4045_CONTIG_1	12	-	1419	14	full-splice_match	HPD	ENST00000289004	1419	14	0	0	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	393	1179	37	1215	5	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_769_CONTIG_1	11	+	532	4	full-splice_match	APOC3	ENST00000227667	550	4	15	3	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2289_CONTIG_1	15	+	926	4	full-splice_match	B2M	ENST00000558401	1715	4	38	751	multi-exon	FALSE	canonical	0	0	406	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6259_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_816_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	23	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3325_CONTIG_1	18	+	1488	6	full-splice_match	VAPA	ENST00000400000	6815	6	33	5294	multi-exon	FALSE	canonical	0	0	813	2	NA	0	0	FALSE	NA	NA	0	A	coding	242	726	244	969	15	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4020_CONTIG_1	11	+	969	3	full-splice_match	NNMT	ENST00000299964	1610	3	592	49	multi-exon	FALSE	canonical	0	0	502	2	NA	1	0	FALSE	NA	NA	0	C	coding	264	792	141	932	15	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4686_CONTIG_1	14	-	1015	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	448	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6322_CONTIG_1	6	-	880	7	full-splice_match	GSTA2	ENST00000493422	1303	7	94	329	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4238_CONTIG_1	4	-	2138	6	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	493	-964	5prime_fragment	FALSE	canonical	0	0	46	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_76_CONTIG_1	4	+	1993	15	full-splice_match	ALB	ENST00000295897	2263	15	50	220	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8219_CONTIG_1	19	-	1844	9	incomplete-splice_match	SLC27A5	ENST00000263093	2361	10	73	444	internal_fragment	FALSE	canonical	0	0	725	2	NA	0	0	FALSE	NA	NA	0	C	coding	602	1806	38	1843	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6108_CONTIG_1	7	-	571	3	full-splice_match	AZGP1	ENST00000411734	2027	3	-14	1470	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	21	569	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8337_CONTIG_1	5	+	1510	7	full-splice_match	CRHBP	ENST00000274368	1980	7	332	138	multi-exon	FALSE	canonical	0	0	901	2	NA	0	0	FALSE	NA	NA	0	A	coding	322	966	91	1056	40	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7030_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6831_CONTIG_1	14	-	962	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	-13	501	internal_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	305	915	48	962	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5838_CONTIG_1	19	+	1160	4	full-splice_match	APOE	ENST00000252486	1208	4	48	0	multi-exon	FALSE	canonical	0	0	299	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	64	1014	0	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8178_CONTIG_1	17	-	376	5	full-splice_match	ASGR1	ENST00000574330	887	5	43	468	multi-exon	FALSE	canonical	0	0	23	2	NA	0	0	FALSE	NA	NA	0	C	coding	111	333	44	376	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3395_CONTIG_1	11	+	531	4	full-splice_match	APOC3	ENST00000227667	550	4	15	4	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7711_CONTIG_1	21	-	537	6	incomplete-splice_match	FTCD	ENST00000397746	1878	14	907	434	internal_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	B	coding	101	303	233	535	15	0.538	0.462	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8455_CONTIG_1	20	-	1007	7	novel_not_in_catalog	EIF6	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	A	coding	214	642	93	734	15	0.498	0.502	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1657_CONTIG_1	19	-	1277	8	novel_not_in_catalog	SLC27A5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	C	coding	284	852	245	1096	20	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2363_CONTIG_1	4	+	1627	13	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1467	2	NA	1	0	TRUE	NA	NA	0	C	coding	463	1389	53	1441	35	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_938_CONTIG_1	4	+	2033	15	full-splice_match	ALB	ENST00000295897	2263	15	49	181	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	65	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6314_CONTIG_1	13	-	966	5	full-splice_match	MTIF3	ENST00000381120	1005	5	21	18	multi-exon	FALSE	canonical	0	0	45	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.17	0.83	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4106_CONTIG_1	4	+	2025	15	full-splice_match	ALB	ENST00000295897	2263	15	50	188	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6775_CONTIG_1	19	-	942	6	novel_not_in_catalog	ADCK4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	35	2	NA	0	0	TRUE	NA	NA	0	A	coding	124	372	39	410	20	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2208_CONTIG_1	19	+	846	4	full-splice_match	FTL	ENST00000331825	878	4	10	22	multi-exon	FALSE	canonical	0	0	572	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	198	722	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5386_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	327	8	multi-exon	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	40	840	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_287_CONTIG_1	22	+	1502	4	full-splice_match	SERPIND1	ENST00000406799	1798	4	779	-483	multi-exon	FALSE	canonical	0	0	661	2	NA	1	0	FALSE	NA	NA	0	C	coding	233	699	152	850	20	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4851_CONTIG_1	9	+	668	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	15	0.57	0.43	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5779_CONTIG_1	14	-	1569	5	full-splice_match	SLC10A1	ENST00000216540	2049	5	43	437	multi-exon	FALSE	canonical	0	0	447	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	92	1138	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2564_CONTIG_1	11	-	351	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	548	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	104	312	39	350	25	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3793_CONTIG_1	4	-	1579	10	full-splice_match	FGG	ENST00000404648	1760	10	134	47	multi-exon	FALSE	canonical	0	0	184	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	107	1417	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7098_CONTIG_1	GL000220.1	+	404	2	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	218	2	NA	2	1	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6986_CONTIG_1	1	+	1431	9	full-splice_match	EPHX1	ENST00000272167	1660	9	0	229	multi-exon	FALSE	canonical	0	0	1246	2	NA	1	0	FALSE	NA	NA	0	C	coding	450	1350	81	1430	20	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4286_CONTIG_1	11	+	1065	5	novel_not_in_catalog	NNMT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	578	2	NA	0	0	TRUE	NA	NA	0	C	coding	136	408	111	518	30	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3099_CONTIG_1	22	+	522	3	full-splice_match	MIF	ENST00000215754	939	3	391	26	multi-exon	FALSE	canonical	0	0	361	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	81	425	50	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4467_CONTIG_1	6	+	933	6	full-splice_match	TMEM14B	ENST00000379542	975	6	12	30	multi-exon	FALSE	canonical	0	0	448	2	NA	0	0	FALSE	NA	NA	0	A	coding	114	342	156	497	50	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5736_CONTIG_1	11	+	543	5	incomplete-splice_match	GPR137	ENST00000313074	1485	7	638	304	internal_fragment	FALSE	canonical	0	0	498	2	NA	0	0	FALSE	NA	NA	0	A	coding	138	414	128	541	15	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4540_CONTIG_1	14	+	722	7	incomplete-splice_match	AMN	ENST00000299155	1907	12	7	1178	3prime_fragment	FALSE	canonical	0	0	677	2	NA	0	0	FALSE	NA	NA	0	B	coding	232	696	27	722	5	0.688	0.312	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6217_CONTIG_1	19	+	835	5	novel_not_in_catalog	APOE	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	753	2	NA	0	0	TRUE	NA	NA	0	C	coding	253	759	75	833	5	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1319_CONTIG_1	11	-	410	2	incomplete-splice_match	UBE2L6	ENST00000528275	605	3	271	-76	5prime_fragment	FALSE	canonical	0	0	96	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_668_CONTIG_1	12	+	1028	4	full-splice_match	PEBP1	ENST00000261313	1697	4	245	424	multi-exon	FALSE	canonical	0	0	453	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	108	668	65	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_327_CONTIG_1	4	+	1999	15	full-splice_match	ALB	ENST00000295897	2263	15	49	215	multi-exon	FALSE	canonical	0	0	1893	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_174_CONTIG_1	5	-	2011	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	45	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7181_CONTIG_1	4	+	2030	15	full-splice_match	ALB	ENST00000295897	2263	15	51	182	multi-exon	FALSE	canonical	0	0	1891	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	65	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6889_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	50	168	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8456_CONTIG_1	1	+	1326	5	incomplete-splice_match	PLOD1	ENST00000196061	2940	19	1615	-1	internal_fragment	FALSE	canonical	0	0	440	2	NA	0	0	FALSE	NA	NA	0	B	coding	155	465	129	593	30	0.556	0.444	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3433_CONTIG_1	19	+	352	4	full-splice_match	APOC1	ENST00000252491	461	4	44	65	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	10	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2736_CONTIG_1	4	+	1917	8	full-splice_match	FGB	ENST00000302068	1975	8	55	3	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6045_CONTIG_1	3	+	2235	17	full-splice_match	TF	ENST00000402696	2968	17	437	296	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7365_CONTIG_1	5	-	275	2	full-splice_match	DAP	ENST00000508646	277	2	-127	129	multi-exon	FALSE	canonical	0	0	215	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4934_CONTIG_1	16	+	1162	2	genic_intron	novelGene_591	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	434	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_794_CONTIG_1	12	-	740	6	incomplete-splice_match	PHB2	ENST00000535923	1515	10	773	2	5prime_fragment	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	63	189	218	406	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7469_CONTIG_1	2	-	485	4	incomplete-splice_match	NCL	ENST00000461347	3967	13	2742	740	internal_fragment	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4974_CONTIG_1	4	+	1462	11	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	464	3prime_fragment	FALSE	canonical	0	0	1328	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	40	1461	40	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5746_CONTIG_1	11	-	538	4	full-splice_match	SAA2	ENST00000256733	563	4	8	17	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8542_CONTIG_1	7	+	2193	7	incomplete-splice_match	AKR1D1	ENST00000242375	2347	9	380	-226	internal_fragment	FALSE	canonical	0	0	600	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.514	0.486	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2362_CONTIG_1	4	+	1140	2	novel_not_in_catalog	TLR3	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	123	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6571_CONTIG_1	4	+	1578	8	full-splice_match	FGB	ENST00000302068	1975	8	55	342	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6966_CONTIG_1	11	+	1817	8	full-splice_match	SERPING1	ENST00000278407	2002	8	172	13	multi-exon	FALSE	canonical	0	0	1304	2	NA	0	0	FALSE	NA	NA	0	C	coding	500	1500	56	1555	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3853_CONTIG_1	9	+	708	6	full-splice_match	ORM1	ENST00000259396	802	6	42	52	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1655_CONTIG_1	2	+	1016	3	incomplete-splice_match	ZC3H15	ENST00000337859	2138	10	1097	25	internal_fragment	FALSE	canonical	0	0	220	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6758_CONTIG_1	4	+	1989	15	full-splice_match	ALB	ENST00000295897	2263	15	48	226	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1137_CONTIG_1	4	+	682	6	full-splice_match	MRPS18C	ENST00000295491	1643	6	81	880	multi-exon	TRUE	canonical	0	0	384	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5048_CONTIG_1	1	-	1205	3	novel_not_in_catalog	APOA2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	38	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6800_CONTIG_1	4	+	1812	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	114	3prime_fragment	FALSE	canonical	0	0	1691	2	NA	1	0	FALSE	NA	NA	0	C	coding	591	1773	40	1812	25	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2300_CONTIG_1	14	-	1020	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	443	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1726_CONTIG_1	16	+	1077	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	374	2	NA	0	0	TRUE	NA	NA	0	C	coding	144	432	543	974	20	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2753_CONTIG_1	8	-	818	7	full-splice_match	RPL7	ENST00000352983	1101	7	257	26	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7158_CONTIG_1	12	-	1430	2	incomplete-splice_match	ATF7	ENST00000548118	774	4	115	-771	5prime_fragment	FALSE	canonical	0	0	97	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5464_CONTIG_1	8	+	1014	9	full-splice_match	NDUFAF6	ENST00000396124	1798	9	25	759	multi-exon	FALSE	canonical	0	0	871	2	NA	0	0	FALSE	NA	NA	0	A	coding	301	903	95	997	25	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1935_CONTIG_1	19	+	474	8	novel_not_in_catalog	FXYD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	399	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3612_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	50	165	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_402_CONTIG_1	5	-	1987	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	69	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.376	0.624	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3960_CONTIG_1	14	+	1004	4	incomplete-splice_match	SERPINA5	ENST00000553780	2071	7	714	353	internal_fragment	FALSE	canonical	0	0	617	2	NA	0	0	FALSE	NA	NA	0	C	coding	258	774	24	797	20	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6552_CONTIG_1	10	+	1625	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	42	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8097_CONTIG_1	1	+	576	4	incomplete-splice_match	PRPF38A	ENST00000257181	5274	10	38	4660	3prime_fragment	FALSE	canonical	0	0	560	2	NA	0	0	FALSE	NA	NA	0	A	coding	142	426	149	574	20	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5892_CONTIG_1	16	+	1232	5	full-splice_match	HP	ENST00000398131	1252	5	14	6	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5664_CONTIG_1	17	-	1909	6	full-splice_match	ACTG1	ENST00000331925	1994	6	78	7	multi-exon	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	70	1194	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1852_CONTIG_1	5	-	1805	10	incomplete-splice_match	C9	ENST00000263408	2713	11	173	735	5prime_fragment	FALSE	canonical	0	0	106	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.52	0.48	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5747_CONTIG_1	5	-	2202	16	incomplete-splice_match	COL4A3BP	ENST00000261415	2262	17	16	44	internal_fragment	FALSE	canonical	0	0	502	2	NA	0	0	FALSE	NA	NA	0	A	coding	598	1794	407	2200	40	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1841_CONTIG_1	2	-	1162	5	full-splice_match	SUMO1	ENST00000392246	1536	5	44	330	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6761_CONTIG_1	1	+	317	2	genic_intron	novelGene_887	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	272	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.462	0.538	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7057_CONTIG_1	2	+	653	2	novel_in_catalog	MTA3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	53	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.238	0.762	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4030_CONTIG_1	4	+	473	3	full-splice_match	FGB	ENST00000497097	574	3	-2	103	multi-exon	FALSE	canonical	0	0	315	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	10	471	50	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3015_CONTIG_1	5	-	2042	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	14	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3508_CONTIG_1	11	+	2133	6	full-splice_match	RCN1	ENST00000054950	2572	6	206	233	multi-exon	FALSE	canonical	0	0	975	2	NA	2	0	FALSE	NA	NA	0	A	coding	331	993	88	1080	20	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6127_CONTIG_1	17	-	1622	8	full-splice_match	VTN	ENST00000226218	2149	8	516	11	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	104	1537	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3966_CONTIG_1	4	+	720	5	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	679	2	NA	1	1	TRUE	NA	NA	0	C	coding	240	720	1	720	35	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5148_CONTIG_1	1	-	440	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	38	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2729_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	50	161	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6669_CONTIG_1	19	+	400	4	full-splice_match	APOE	ENST00000252486	1208	4	44	764	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	111	333	68	400	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7772_CONTIG_1	4	+	1560	8	full-splice_match	FGB	ENST00000302068	1975	8	55	360	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4856_CONTIG_1	6	-	1375	8	full-splice_match	HLA-C	ENST00000376228	1536	8	-4	165	multi-exon	FALSE	canonical	0	0	92	2	NA	1	0	FALSE	NA	NA	0	C	coding	366	1098	20	1117	20	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6512_CONTIG_1	10	+	1851	8	incomplete-splice_match	CYP2C18	ENST00000285979	2418	9	490	77	internal_fragment	FALSE	canonical	0	0	1000	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.554	0.446	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5327_CONTIG_1	11	-	889	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	9	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4511_CONTIG_1	17	-	514	3	full-splice_match	LSMD1	ENST00000335155	378	3	-121	-15	multi-exon	FALSE	canonical	0	0	202	2	NA	0	0	FALSE	NA	NA	0	C	coding	118	354	143	496	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3888_CONTIG_1	12	+	2360	10	incomplete-splice_match	C1S	ENST00000360817	2635	12	363	-88	internal_fragment	FALSE	canonical	0	0	1183	2	NA	1	0	FALSE	NA	NA	0	B	coding	521	1563	415	1977	20	0.692	0.308	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4908_CONTIG_1	4	+	1866	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	49	348	3prime_fragment	FALSE	canonical	0	0	1825	2	NA	0	0	FALSE	NA	NA	0	C	coding	608	1824	41	1864	50	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_188_CONTIG_1	19	-	1323	9	full-splice_match	DHPS	ENST00000210060	1363	9	44	-4	multi-exon	FALSE	canonical	0	0	299	2	NA	0	0	FALSE	NA	NA	0	A	coding	369	1107	93	1199	0	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5709_CONTIG_1	4	+	601	2	incomplete-splice_match	FGB	ENST00000509493	1164	6	587	-24	internal_fragment	FALSE	canonical	0	0	274	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6435_CONTIG_1	8	-	420	4	full-splice_match	SNHG6	ENST00000520944	638	4	55	163	multi-exon	FALSE	canonical	0	0	105	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1850_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3699_CONTIG_1	9	+	1291	3	novel_in_catalog	C8G	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1126	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_272_CONTIG_1	14	-	1313	5	full-splice_match	TMED10	ENST00000303575	4127	5	4	2810	multi-exon	FALSE	canonical	0	0	273	2	NA	0	0	FALSE	NA	NA	0	A	coding	219	657	49	705	45	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_731_CONTIG_1	17	-	1684	8	full-splice_match	VTN	ENST00000226218	2149	8	445	20	multi-exon	FALSE	canonical	0	0	238	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	175	1608	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2640_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7651_CONTIG_1	7	+	1685	4	full-splice_match	ATP6V0E2	ENST00000425642	1649	4	-45	9	multi-exon	FALSE	canonical	0	0	333	2	NA	0	0	FALSE	NA	NA	0	A	coding	81	243	69	311	35	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7133_CONTIG_1	10	-	925	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	152	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_432_CONTIG_1	7	+	1195	5	full-splice_match	AP1S1	ENST00000337619	1306	5	37	74	multi-exon	FALSE	canonical	0	0	510	2	NA	2	0	FALSE	NA	NA	0	C	coding	158	474	82	555	15	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7936_CONTIG_1	3	+	1578	10	incomplete-splice_match	EIF4G1	ENST00000435046	4668	26	2973	117	internal_fragment	FALSE	canonical	0	0	1074	2	NA	1	0	FALSE	NA	NA	0	A	coding	341	1023	231	1253	5	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_739_CONTIG_1	4	+	2036	15	full-splice_match	ALB	ENST00000295897	2263	15	50	177	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8703_CONTIG_1	2	+	1045	10	incomplete-splice_match	AGXT	ENST00000307503	1865	11	368	452	3prime_fragment	FALSE	canonical	0	0	961	2	NA	0	0	FALSE	NA	NA	0	C	coding	342	1026	20	1045	25	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1783_CONTIG_1	4	+	313	3	novel_in_catalog	FGB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	185	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2316_CONTIG_1	3	+	1861	8	incomplete-splice_match	NMD3	ENST00000351193	3049	16	861	327	internal_fragment	FALSE	canonical	0	0	660	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4285_CONTIG_1	16	+	914	7	novel_in_catalog	KAT8	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	797	2	NA	0	0	FALSE	NA	NA	0	A	coding	242	726	134	859	20	0.264	0.736	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8127_CONTIG_1	4	+	1198	6	incomplete-splice_match	FGB	ENST00000302068	1975	8	438	339	internal_fragment	FALSE	canonical	0	0	869	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1880_CONTIG_1	9	-	1556	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	846	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	45	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4926_CONTIG_1	1	-	467	4	full-splice_match	APOA2	ENST00000367990	474	4	4	3	multi-exon	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	55	354	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_57_CONTIG_1	11	+	1622	8	full-splice_match	LDHA	ENST00000422447	2416	8	175	619	multi-exon	FALSE	canonical	0	0	932	2	NA	0	0	FALSE	NA	NA	0	C	coding	332	996	99	1094	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3455_CONTIG_1	11	+	1173	5	full-splice_match	TAGLN	ENST00000392951	928	5	-14	-231	multi-exon	FALSE	canonical	0	0	599	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	139	741	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7884_CONTIG_1	3	+	1301	5	full-splice_match	AADAC	ENST00000232892	1642	5	79	262	multi-exon	FALSE	canonical	0	0	650	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8592_CONTIG_1	1	-	1900	8	novel_not_in_catalog	AGT	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	861	2	NA	4	0	TRUE	NA	NA	0	C	coding	485	1455	6	1460	65	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3442_CONTIG_1	X	+	2016	5	incomplete-splice_match	HTATSF1	ENST00000218364	2775	9	753	6	internal_fragment	TRUE	canonical	0	0	483	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8153_CONTIG_1	19	-	1040	5	full-splice_match	LSM4	ENST00000593829	1908	5	180	688	multi-exon	FALSE	canonical	0	0	77	2	NA	0	0	FALSE	NA	NA	0	A	coding	139	417	75	491	25	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7447_CONTIG_1	4	-	1501	10	full-splice_match	FGG	ENST00000404648	1760	10	190	69	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	51	1361	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8100_CONTIG_1	11	+	921	8	full-splice_match	C11orf54	ENST00000528288	4094	8	3	3170	multi-exon	FALSE	canonical	0	0	856	2	NA	0	0	FALSE	NA	NA	0	C	coding	229	687	233	919	35	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8683_CONTIG_1	16	+	1085	3	full-splice_match	HP	ENST00000566821	3024	3	1908	31	multi-exon	FALSE	canonical	0	0	173	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	266	949	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6103_CONTIG_1	1	-	1936	2	full-splice_match	CRP	ENST00000255030	2015	2	0	79	multi-exon	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	coding	224	672	105	776	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8070_CONTIG_1	4	-	1244	10	incomplete-splice_match	GC	ENST00000503472	1466	12	212	10	5prime_fragment	FALSE	canonical	0	0	145	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_38_CONTIG_1	2	-	740	5	incomplete-splice_match	HDLBP	ENST00000427183	4283	28	3362	181	5prime_fragment	FALSE	canonical	0	0	23	2	NA	0	0	FALSE	NA	NA	0	B	coding	142	426	114	539	30	0.536	0.464	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4138_CONTIG_1	4	+	1824	13	incomplete-splice_match	ALB	ENST00000295897	2263	15	261	178	internal_fragment	FALSE	canonical	0	0	1681	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	159	1655	60	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5904_CONTIG_1	17	-	1589	8	full-splice_match	VTN	ENST00000226218	2149	8	525	35	multi-exon	FALSE	canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	95	1528	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3902_CONTIG_1	1	+	286	5	incomplete-splice_match	ABCD3	ENST00000454898	2269	24	1446	537	internal_fragment	FALSE	canonical	0	0	222	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3577_CONTIG_1	19	-	1708	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	56	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8089_CONTIG_1	4	-	1551	10	full-splice_match	FGG	ENST00000404648	1760	10	193	16	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6717_CONTIG_1	6	-	879	7	full-splice_match	GSTA2	ENST00000493422	1303	7	94	330	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6100_CONTIG_1	17	-	1544	9	incomplete-splice_match	FBXL20	ENST00000264658	2445	15	718	183	5prime_fragment	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	A	coding	278	834	18	851	5	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6229_CONTIG_1	6	-	1219	8	novel_not_in_catalog	HLA-B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	282	2	NA	1	0	TRUE	NA	NA	0	C	coding	241	723	27	749	20	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8436_CONTIG_1	19	-	1620	2	incomplete-splice_match	DNAJB1	ENST00000254322	2264	3	555	89	5prime_fragment	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	A	coding	158	474	63	536	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1480_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7478_CONTIG_1	10	-	769	4	full-splice_match	PCBD1	ENST00000299299	1006	4	232	5	multi-exon	FALSE	canonical	0	0	22	2	NA	0	0	FALSE	NA	NA	0	A	coding	104	312	20	331	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7245_CONTIG_1	19	-	910	9	incomplete-splice_match	C3	ENST00000245907	5263	41	4219	134	5prime_fragment	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	B	coding	280	840	24	863	10	0.676	0.324	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2783_CONTIG_1	3	-	775	5	full-splice_match	SSR3	ENST00000265044	3716	5	55	2886	multi-exon	FALSE	canonical	0	0	173	2	NA	0	0	FALSE	NA	NA	0	A	coding	185	555	41	595	50	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8225_CONTIG_1	X	+	616	4	incomplete-splice_match	BGN	ENST00000331595	2402	8	80	1706	3prime_fragment	FALSE	canonical	0	0	457	2	NA	0	0	FALSE	NA	NA	0	A	coding	170	510	107	616	25	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1160_CONTIG_1	4	+	232	2	incomplete-splice_match	FGB	ENST00000425838	565	5	246	87	internal_fragment	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5324_CONTIG_1	3	+	1691	11	novel_in_catalog	GOLGA4	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1072	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7634_CONTIG_1	7	+	929	4	full-splice_match	IGFBP1	ENST00000275525	1653	4	131	593	multi-exon	FALSE	canonical	0	0	813	2	NA	0	0	FALSE	NA	NA	0	C	coding	254	762	166	927	50	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7455_CONTIG_1	4	+	1578	8	full-splice_match	FGB	ENST00000302068	1975	8	61	336	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8036_CONTIG_1	9	-	1218	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	44	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_930_CONTIG_1	19	+	413	4	full-splice_match	APOC1	ENST00000252491	461	4	44	4	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1645_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	447	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8054_CONTIG_1	22	+	294	2	full-splice_match	SMARCB1	ENST00000477836	660	2	401	-35	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.21	0.79	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6219_CONTIG_1	12	-	1761	8	full-splice_match	KRT8	ENST00000293308	1777	8	15	1	multi-exon	FALSE	canonical	0	0	400	2	NA	0	0	FALSE	NA	NA	0	C	coding	483	1449	77	1525	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5781_CONTIG_1	1	+	1564	11	incomplete-splice_match	ATF6	ENST00000367942	7496	16	621	5311	internal_fragment	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	A	coding	459	1377	80	1456	40	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7886_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6984_CONTIG_1	5	-	2044	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	12	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8235_CONTIG_1	15	-	1413	10	full-splice_match	RPL4	ENST00000307961	2767	10	37	1317	multi-exon	FALSE	canonical	0	0	59	2	NA	1	0	FALSE	NA	NA	0	C	coding	427	1281	57	1337	40	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2414_CONTIG_1	9	+	756	6	full-splice_match	ORM1	ENST00000259396	802	6	42	4	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1856_CONTIG_1	4	+	1621	8	full-splice_match	FGB	ENST00000302068	1975	8	57	297	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3300_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7553_CONTIG_1	6	+	1637	4	novel_in_catalog	FAM135A	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	393	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1353_CONTIG_1	4	-	1556	10	full-splice_match	FGG	ENST00000404648	1760	10	193	11	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_213_CONTIG_1	11	-	854	5	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	18	2	NA	1	0	TRUE	NA	NA	0	C	coding	252	756	39	794	10	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7744_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8654_CONTIG_1	1	-	804	3	novel_in_catalog	CRP	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6924_CONTIG_1	14	-	388	4	full-splice_match	ERH	ENST00000557016	1116	4	343	385	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	104	312	52	363	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5791_CONTIG_1	15	+	1706	9	full-splice_match	SORD	ENST00000267814	4909	9	107	3096	multi-exon	FALSE	canonical	0	0	981	2	NA	0	0	FALSE	NA	NA	0	C	coding	357	1071	74	1144	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3946_CONTIG_1	6	+	1743	12	incomplete-splice_match	PLG	ENST00000308192	2741	19	939	59	internal_fragment	FALSE	canonical	0	0	1395	2	NA	0	0	FALSE	NA	NA	0	C	coding	407	1221	334	1554	50	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6174_CONTIG_1	11	+	668	5	full-splice_match	MRPL23	ENST00000397298	736	5	54	14	multi-exon	FALSE	canonical	0	0	328	2	NA	0	0	FALSE	NA	NA	0	C	coding	153	459	32	490	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4191_CONTIG_1	11	-	857	7	incomplete-splice_match	HPX	ENST00000265983	1652	10	72	723	internal_fragment	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	276	828	30	857	20	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7395_CONTIG_1	17	-	1129	8	full-splice_match	APOH	ENST00000205948	1176	8	31	16	multi-exon	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5802_CONTIG_1	10	+	582	5	full-splice_match	PRAP1	ENST00000433452	971	5	251	138	multi-exon	FALSE	canonical	0	0	283	2	NA	0	0	FALSE	NA	NA	0	A	coding	151	453	22	474	5	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3187_CONTIG_1	14	+	660	2	full-splice_match	ANG	ENST00000397990	742	2	4	78	multi-exon	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	117	557	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3421_CONTIG_1	11	-	631	2	full-splice_match	IFITM3	ENST00000399808	808	2	167	10	multi-exon	FALSE	canonical	0	0	319	2	NA	0	0	FALSE	NA	NA	0	C	coding	133	399	71	469	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_383_CONTIG_1	3	+	1203	7	novel_not_in_catalog	ALAS1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	938	2	NA	0	0	TRUE	NA	NA	0	C	coding	271	813	124	936	45	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6639_CONTIG_1	19	+	1168	4	full-splice_match	APOE	ENST00000252486	1208	4	39	1	multi-exon	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	73	1023	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6294_CONTIG_1	16	-	386	3	full-splice_match	MT1G	ENST00000379811	405	3	0	19	multi-exon	FALSE	canonical	0	0	100	2	NA	1	0	FALSE	NA	NA	0	C	coding	49	147	150	296	40	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6974_CONTIG_1	19	+	1238	5	full-splice_match	TSEN34	ENST00000302937	1424	5	123	63	multi-exon	FALSE	canonical	0	0	809	2	NA	0	0	FALSE	NA	NA	0	A	coding	310	930	65	994	15	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5297_CONTIG_1	19	-	1402	2	full-splice_match	LRG1	ENST00000306390	3036	2	439	1195	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	23	1063	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1717_CONTIG_1	4	+	273	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	1207	3	internal_fragment	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7532_CONTIG_1	19	+	382	4	full-splice_match	RPL36	ENST00000347512	707	4	99	226	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	A	coding	105	315	36	350	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1227_CONTIG_1	19	+	801	4	full-splice_match	FTL	ENST00000331825	878	4	8	69	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6623_CONTIG_1	22	+	514	4	full-splice_match	LGALS1	ENST00000215909	560	4	28	18	multi-exon	FALSE	canonical	0	0	328	2	NA	0	0	FALSE	NA	NA	0	C	coding	135	405	68	472	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4415_CONTIG_1	19	+	1163	4	full-splice_match	APOE	ENST00000252486	1208	4	42	3	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6381_CONTIG_1	10	+	1642	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	25	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4479_CONTIG_1	4	+	1975	15	full-splice_match	ALB	ENST00000295897	2263	15	50	238	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1475_CONTIG_1	9	-	1073	8	full-splice_match	PLIN2	ENST00000276914	1972	8	84	815	multi-exon	FALSE	canonical	0	0	74	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	97	1071	20	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7150_CONTIG_1	4	+	313	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	252	918	internal_fragment	FALSE	canonical	0	0	271	2	NA	0	0	FALSE	NA	NA	0	C	coding	45	135	177	311	10	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_39_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7419_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	454	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	47	1006	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5198_CONTIG_1	4	+	1908	8	full-splice_match	FGB	ENST00000302068	1975	8	59	8	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5387_CONTIG_1	17	-	1101	8	full-splice_match	APOH	ENST00000205948	1176	8	15	60	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	345	1035	24	1058	30	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2250_CONTIG_1	4	+	1153	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	243	87	internal_fragment	FALSE	canonical	0	0	1075	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	186	1049	50	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8168_CONTIG_1	21	-	732	4	full-splice_match	TCP10L	ENST00000472557	732	4	-22	22	multi-exon	FALSE	canonical	0	0	135	2	NA	0	0	FALSE	NA	NA	0	C	coding	129	387	250	636	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8095_CONTIG_1	11	+	859	5	full-splice_match	TMEM179B	ENST00000333449	1023	5	-17	181	multi-exon	FALSE	canonical	0	0	520	2	NA	0	0	FALSE	NA	NA	0	C	coding	219	657	23	679	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1527_CONTIG_1	4	-	1747	6	full-splice_match	UGT2B15	ENST00000338206	2077	6	289	41	multi-exon	FALSE	canonical	0	0	445	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3122_CONTIG_1	15	+	1325	10	full-splice_match	SNURF	ENST00000338094	1326	10	1	0	multi-exon	FALSE	canonical	0	0	1149	2	NA	1	0	FALSE	NA	NA	0	A	coding	240	720	465	1184	25	0.384	0.616	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3781_CONTIG_1	2	-	1947	12	novel_not_in_catalog	HSPD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	2	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2590_CONTIG_1	4	+	1919	15	full-splice_match	ALB	ENST00000295897	2263	15	50	294	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1278_CONTIG_1	17	+	1337	3	incomplete-splice_match	GPRC5C	ENST00000392629	1419	4	348	-266	internal_fragment	FALSE	canonical	0	0	891	2	NA	0	0	FALSE	NA	NA	0	B	coding	235	705	364	1068	5	0.564	0.436	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_799_CONTIG_1	5	+	1561	5	full-splice_match	GPX3	ENST00000388825	1636	5	29	46	multi-exon	FALSE	canonical	0	0	522	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6606_CONTIG_1	12	+	950	4	full-splice_match	PEBP1	ENST00000261313	1697	4	253	494	multi-exon	FALSE	canonical	0	0	445	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	100	660	55	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1977_CONTIG_1	4	+	1845	8	full-splice_match	FGB	ENST00000302068	1975	8	55	75	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_753_CONTIG_1	2	-	931	3	novel_not_in_catalog	NAT8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	55	2	NA	1	0	TRUE	NA	NA	0	A	coding	227	681	130	810	70	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3141_CONTIG_1	19	+	1487	6	full-splice_match	TMEM38A	ENST00000187762	2649	6	28	1134	multi-exon	FALSE	canonical	0	0	735	2	NA	0	0	FALSE	NA	NA	0	A	coding	299	897	64	960	40	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2511_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	48	159	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4488_CONTIG_1	17	-	1584	8	full-splice_match	VTN	ENST00000226218	2149	8	495	70	multi-exon	FALSE	canonical	0	0	188	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	125	1558	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_800_CONTIG_1	4	+	2036	15	full-splice_match	ALB	ENST00000295897	2263	15	49	178	multi-exon	FALSE	canonical	0	0	1893	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	60	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7429_CONTIG_1	7	+	444	3	incomplete-splice_match	IGFBP1	ENST00000457280	1601	4	471	686	3prime_fragment	FALSE	canonical	0	0	341	2	NA	0	0	FALSE	NA	NA	0	C	coding	146	438	6	443	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1476_CONTIG_1	12	+	765	3	incomplete-splice_match	PEBP1	ENST00000261313	1697	4	520	412	internal_fragment	FALSE	canonical	0	0	178	2	NA	1	0	FALSE	NA	NA	0	C	coding	96	288	106	393	90	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8656_CONTIG_1	4	-	2086	5	full-splice_match	FGA	ENST00000403106	2248	5	24	138	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	56	1987	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8697_CONTIG_1	16	+	1229	5	full-splice_match	HP	ENST00000398131	1252	5	14	9	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3790_CONTIG_1	4	-	1578	9	full-splice_match	ADH4	ENST00000265512	1993	9	-60	475	multi-exon	FALSE	canonical	0	0	153	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5016_CONTIG_1	1	-	1841	2	incomplete-splice_match	SLC16A1	ENST00000369626	3910	5	1541	528	5prime_fragment	FALSE	canonical	0	0	50	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2903_CONTIG_1	4	+	1995	15	full-splice_match	ALB	ENST00000295897	2263	15	48	220	multi-exon	FALSE	canonical	0	0	1894	2	NA	3	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3176_CONTIG_1	3	+	1572	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	0	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7957_CONTIG_1	2	-	1797	2	incomplete-splice_match	SLC40A1	ENST00000261024	3442	8	1634	11	5prime_fragment	FALSE	canonical	0	0	195	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4043_CONTIG_1	4	+	1904	8	full-splice_match	FGB	ENST00000302068	1975	8	63	8	multi-exon	FALSE	canonical	0	0	1244	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8735_CONTIG_1	16	-	1944	14	full-splice_match	CES1	ENST00000361503	1835	14	78	-187	multi-exon	FALSE	canonical	0	0	105	2	NA	0	0	FALSE	NA	NA	0	C	coding	567	1701	54	1754	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6152_CONTIG_1	12	-	907	7	full-splice_match	RPL6	ENST00000202773	947	7	36	4	multi-exon	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	20	883	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2311_CONTIG_1	1	-	1540	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	51	3	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	69	1460	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7790_CONTIG_1	6	+	1002	6	full-splice_match	RNF5	ENST00000375094	1168	6	118	48	multi-exon	FALSE	canonical	0	0	485	2	NA	0	0	FALSE	NA	NA	0	C	coding	180	540	41	580	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6031_CONTIG_1	9	-	1147	4	novel_not_in_catalog	BAAT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	154	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	564	1088	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3201_CONTIG_1	14	-	947	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	-13	516	internal_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	300	900	48	947	50	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1534_CONTIG_1	2	-	777	4	incomplete-splice_match	HDLBP	ENST00000422933	929	6	347	-195	internal_fragment	FALSE	canonical	0	0	142	2	NA	1	0	FALSE	NA	NA	0	B	coding	198	594	182	775	35	0.446	0.554	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3159_CONTIG_1	11	-	447	5	incomplete-splice_match	RPS13	ENST00000525634	646	6	121	78	internal_fragment	FALSE	canonical	0	0	48	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	26	445	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5141_CONTIG_1	5	-	1395	9	novel_in_catalog	H2AFY	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	183	2	NA	0	0	FALSE	NA	NA	0	B	coding	371	1113	217	1329	10	0.648	0.352	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6953_CONTIG_1	7	-	1110	8	full-splice_match	STAG3L2	ENST00000429726	1122	8	25	-13	multi-exon	FALSE	canonical	0	0	198	2	NA	0	0	FALSE	NA	NA	0	A	coding	130	390	370	759	60	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_484_CONTIG_1	3	-	944	8	full-splice_match	MGLL	ENST00000398104	4187	8	23	3220	multi-exon	FALSE	canonical	0	0	102	2	NA	0	0	FALSE	NA	NA	0	C	coding	274	822	123	944	25	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3704_CONTIG_1	8	-	1044	7	incomplete-splice_match	PUF60	ENST00000456095	1736	11	226	466	internal_fragment	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	A	coding	336	1008	36	1043	30	0.326	0.674	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_37_CONTIG_1	7	-	1092	7	full-splice_match	TMEM176B	ENST00000326442	1129	7	15	22	multi-exon	FALSE	canonical	0	0	52	2	NA	1	0	FALSE	NA	NA	0	C	coding	270	810	58	867	35	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7009_CONTIG_1	17	+	616	5	full-splice_match	NME1-NME2	ENST00000512737	826	5	166	44	multi-exon	FALSE	canonical	0	0	399	2	NA	0	0	FALSE	NA	NA	0	A	coding	152	456	59	514	30	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7316_CONTIG_1	4	+	1866	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	194	203	internal_fragment	FALSE	canonical	0	0	1748	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	226	1722	0	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7924_CONTIG_1	4	-	1153	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	732	-218	5prime_fragment	FALSE	canonical	0	0	27	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4530_CONTIG_1	20	+	1534	6	novel_not_in_catalog	MRGBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	402	2	NA	0	0	TRUE	NA	NA	0	A	coding	71	213	121	333	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6880_CONTIG_1	12	-	1450	8	full-splice_match	KRT8	ENST00000293308	1777	8	306	21	multi-exon	FALSE	canonical	0	0	109	2	NA	1	0	FALSE	NA	NA	0	C	coding	366	1098	137	1234	30	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1552_CONTIG_1	16	-	671	2	genic_intron	novelGene_590	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2327_CONTIG_1	7	-	1096	7	full-splice_match	TMEM176B	ENST00000326442	1129	7	3	30	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	270	810	70	879	45	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6865_CONTIG_1	20	-	1845	4	novel_in_catalog	AURKA	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	A	coding	123	369	379	747	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7046_CONTIG_1	1	+	304	3	incomplete-splice_match	CACYBP	ENST00000405362	1059	6	787	-32	internal_fragment	FALSE	canonical	0	0	115	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5657_CONTIG_1	9	+	757	6	full-splice_match	ORM1	ENST00000259396	802	6	42	3	multi-exon	FALSE	canonical	0	0	576	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1377_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	50	168	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1446_CONTIG_1	19	+	337	4	full-splice_match	APOC2	ENST00000252490	717	4	65	315	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	39	335	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6964_CONTIG_1	13	+	997	4	novel_not_in_catalog	ALG11	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	384	2	NA	2	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_750_CONTIG_1	4	+	1059	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	372	52	internal_fragment	FALSE	canonical	0	0	946	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	57	920	5	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7013_CONTIG_1	19	+	801	4	full-splice_match	GADD45B	ENST00000215631	1373	4	0	572	multi-exon	FALSE	canonical	0	0	601	2	NA	1	0	FALSE	NA	NA	0	C	coding	160	480	233	712	40	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1745_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	4	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5625_CONTIG_1	16	+	1060	3	full-splice_match	HP	ENST00000566821	3024	3	1956	8	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	218	901	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8312_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	49	164	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	40	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6151_CONTIG_1	1	+	1512	6	novel_not_in_catalog	ESPN	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	581	2	NA	0	0	FALSE	NA	NA	0	B	coding	229	687	40	726	10	0.6	0.4	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5649_CONTIG_1	9	+	1189	3	full-splice_match	GNG10	ENST00000374293	1491	3	273	29	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1732_CONTIG_1	7	+	1774	6	full-splice_match	CBX3	ENST00000396386	1857	6	88	-5	multi-exon	FALSE	canonical	0	0	499	2	NA	4	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_690_CONTIG_1	4	-	1454	9	full-splice_match	ADH1A	ENST00000209668	1499	9	43	2	multi-exon	FALSE	canonical	0	0	89	2	NA	2	0	FALSE	NA	NA	0	C	coding	375	1125	72	1196	10	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4533_CONTIG_1	21	+	635	5	full-splice_match	SOD1	ENST00000270142	966	5	71	260	multi-exon	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	78	539	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5458_CONTIG_1	19	+	1430	4	full-splice_match	FAM32A	ENST00000263384	1455	4	-8	33	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	112	336	34	369	60	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7427_CONTIG_1	3	+	1501	7	full-splice_match	AHSG	ENST00000411641	1711	7	137	73	multi-exon	FALSE	canonical	0	0	841	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	83	1183	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1751_CONTIG_1	17	-	1474	8	full-splice_match	VTN	ENST00000226218	2149	8	515	160	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	456	1368	105	1472	15	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_530_CONTIG_1	3	+	1852	12	novel_in_catalog	CEP63	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1465	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.378	0.622	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3060_CONTIG_1	4	-	2061	2	full-splice_match	CXCL2	ENST00000510048	568	2	3	-1496	multi-exon	FALSE	canonical	0	0	173	2	NA	1	0	FALSE	NA	NA	0	C	coding	75	225	74	298	5	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5276_CONTIG_1	3	-	1354	4	novel_not_in_catalog	TUSC2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	266	2	NA	0	0	TRUE	NA	NA	0	A	coding	110	330	121	450	25	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_34_CONTIG_1	19	-	1316	14	incomplete-splice_match	C3	ENST00000245907	5263	41	3716	231	5prime_fragment	FALSE	canonical	0	0	23	2	NA	0	0	FALSE	NA	NA	0	B	coding	373	1119	197	1315	15	0.648	0.352	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2428_CONTIG_1	9	-	734	7	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	201	2	NA	0	0	TRUE	NA	NA	0	C	coding	175	525	85	609	45	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_581_CONTIG_1	4	-	1562	10	full-splice_match	FGG	ENST00000404648	1760	10	193	5	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8319_CONTIG_1	8	-	785	6	incomplete-splice_match	EEF1D	ENST00000317198	1179	8	262	132	internal_fragment	FALSE	canonical	0	0	124	2	NA	0	0	FALSE	NA	NA	0	C	coding	259	777	8	784	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6368_CONTIG_1	12	+	693	4	full-splice_match	MGST1	ENST00000396210	914	4	-37	258	multi-exon	FALSE	canonical	0	0	342	2	NA	0	0	FALSE	NA	NA	0	C	coding	155	465	122	586	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6440_CONTIG_1	4	-	1288	9	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	128	2	NA	1	0	TRUE	NA	NA	0	C	coding	387	1161	51	1211	30	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3003_CONTIG_1	19	-	1687	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	77	multi-exon	FALSE	canonical	0	0	201	2	NA	2	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	35	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1139_CONTIG_1	17	-	990	5	incomplete-splice_match	KAT2A	ENST00000465682	2990	18	1993	7	5prime_fragment	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	A	coding	84	252	212	463	10	0.172	0.828	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5621_CONTIG_1	17	+	1426	8	full-splice_match	SERPINF1	ENST00000254722	1548	8	83	39	multi-exon	FALSE	canonical	0	0	1077	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	81	1334	50	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3217_CONTIG_1	12	-	1080	6	incomplete-splice_match	ATP5B	ENST00000262030	1789	10	692	17	5prime_fragment	FALSE	canonical	0	0	151	2	NA	0	0	FALSE	NA	NA	0	C	coding	313	939	8	946	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7542_CONTIG_1	19	+	1122	5	novel_in_catalog	OAZ1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	625	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.542	0.458	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4733_CONTIG_1	16	+	287	2	novel_not_in_catalog	MT1F	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	60	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2518_CONTIG_1	11	-	925	5	novel_not_in_catalog	MS4A6A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	106	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8072_CONTIG_1	7	+	2176	7	incomplete-splice_match	KLHL7	ENST00000545443	2814	11	522	116	internal_fragment	FALSE	canonical	0	0	889	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.22	0.78	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6991_CONTIG_1	10	+	504	5	full-splice_match	RPS24	ENST00000372360	510	5	-2	8	multi-exon	FALSE	canonical	0	0	429	2	NA	0	0	FALSE	NA	NA	0	C	coding	133	399	40	438	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3955_CONTIG_1	4	-	1557	10	full-splice_match	FGG	ENST00000404648	1760	10	193	10	multi-exon	FALSE	canonical	0	0	125	2	NA	2	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1714_CONTIG_1	22	-	2112	4	novel_in_catalog	PI4KA	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1298	2	NA	1	0	FALSE	NA	NA	0	A	coding	112	336	1430	1765	20	0.288	0.712	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_253_CONTIG_1	7	+	748	5	full-splice_match	PPIA	ENST00000468812	2238	5	1	1489	multi-exon	FALSE	canonical	0	0	406	2	NA	0	0	FALSE	NA	NA	0	C	coding	165	495	45	539	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5960_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	48	173	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3523_CONTIG_1	4	+	1437	11	full-splice_match	ALB	ENST00000511370	1519	11	72	10	multi-exon	FALSE	canonical	0	0	1314	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	425	1288	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4230_CONTIG_1	10	-	742	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	335	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	25	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2260_CONTIG_1	6	-	431	4	full-splice_match	ECI2	ENST00000489086	558	4	-28	155	multi-exon	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	C	coding	103	309	122	430	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3137_CONTIG_1	1	-	1535	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	51	8	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	69	1460	35	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8544_CONTIG_1	6	+	875	7	full-splice_match	CSNK2B	ENST00000375882	948	7	46	27	multi-exon	FALSE	canonical	0	0	667	2	NA	1	0	FALSE	NA	NA	0	A	coding	215	645	111	755	65	0.212	0.788	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4584_CONTIG_1	4	+	1435	11	full-splice_match	ALB	ENST00000511370	1519	11	36	48	multi-exon	FALSE	canonical	0	0	1350	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	461	1324	50	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1452_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	50	202	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_453_CONTIG_1	4	+	2022	15	full-splice_match	ALB	ENST00000295897	2263	15	50	191	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4569_CONTIG_1	9	-	636	5	incomplete-splice_match	RPS6	ENST00000380394	1387	6	18	733	internal_fragment	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	coding	198	594	42	635	65	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8226_CONTIG_1	1	+	2382	12	full-splice_match	ALPL	ENST00000374832	2193	12	-9	-180	multi-exon	FALSE	canonical	0	0	1572	2	NA	2	0	FALSE	NA	NA	0	A	coding	524	1572	264	1835	10	0.524	0.476	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4374_CONTIG_1	9	-	1117	9	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	208	2	NA	1	0	TRUE	NA	NA	0	C	coding	308	924	92	1015	30	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1293_CONTIG_1	9	+	1133	5	novel_in_catalog	ORM1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	991	2	NA	0	0	FALSE	NA	NA	0	C	coding	194	582	37	618	20	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5081_CONTIG_1	1	-	477	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	1	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8042_CONTIG_1	17	+	1338	2	antisense	novelGene_DDX5_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	589	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1961_CONTIG_1	4	+	1998	15	full-splice_match	ALB	ENST00000295897	2263	15	50	215	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5891_CONTIG_1	2	+	1894	10	incomplete-splice_match	AOX1	ENST00000485106	3213	22	1615	-296	internal_fragment	TRUE	canonical	0	0	1090	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.612	0.388	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1606_CONTIG_1	3	+	1791	14	incomplete-splice_match	TF	ENST00000264998	2143	16	266	86	internal_fragment	FALSE	canonical	0	0	1671	2	NA	0	0	FALSE	NA	NA	0	C	coding	424	1272	432	1703	15	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1069_CONTIG_1	4	+	1582	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	524	157	internal_fragment	FALSE	canonical	0	0	1418	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	4	1392	30	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7467_CONTIG_1	4	+	2005	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1895	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	10	0.94	0.06	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_59_CONTIG_1	16	-	999	3	full-splice_match	MRPS34	ENST00000397375	1024	3	25	0	multi-exon	FALSE	canonical	0	0	332	2	NA	0	0	FALSE	NA	NA	0	A	coding	218	654	12	665	0	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7259_CONTIG_1	8	-	1862	5	novel_in_catalog	RPL7	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	945	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	1042	1566	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3714_CONTIG_1	19	-	1789	2	full-splice_match	LRG1	ENST00000306390	3036	2	438	809	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	24	1064	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1445_CONTIG_1	4	+	1099	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	336	48	internal_fragment	FALSE	canonical	0	0	982	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	93	956	0	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5993_CONTIG_1	3	-	1480	7	full-splice_match	BDH1	ENST00000358186	3330	7	-20	1870	multi-exon	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	A	coding	343	1029	207	1235	25	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7101_CONTIG_1	X	-	832	7	full-splice_match	RPS4X	ENST00000316084	1526	7	82	612	multi-exon	FALSE	canonical	0	0	26	2	NA	0	0	FALSE	NA	NA	0	C	coding	263	789	24	812	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2302_CONTIG_1	15	+	894	4	full-splice_match	B2M	ENST00000558401	1715	4	36	785	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3095_CONTIG_1	11	-	1093	4	full-splice_match	CFL1	ENST00000308162	1234	4	153	-12	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	82	579	55	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6394_CONTIG_1	8	+	2090	8	full-splice_match	RAB2A	ENST00000262646	3848	8	130	1628	multi-exon	FALSE	canonical	0	0	764	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5563_CONTIG_1	16	-	1998	8	incomplete-splice_match	ACSM2B	ENST00000563943	1527	11	640	-1111	5prime_fragment	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	B	coding	265	795	19	813	45	0.676	0.324	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2361_CONTIG_1	3	+	1570	7	full-splice_match	AHSG	ENST00000411641	1711	7	137	4	multi-exon	FALSE	canonical	0	0	841	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	83	1183	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4630_CONTIG_1	2	+	614	3	full-splice_match	ID2	ENST00000396290	1362	3	73	675	multi-exon	FALSE	canonical	0	0	522	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	111	512	40	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1469_CONTIG_1	4	+	385	4	full-splice_match	ALB	ENST00000484992	693	4	320	-12	multi-exon	FALSE	canonical	0	0	289	2	NA	1	0	FALSE	NA	NA	0	C	coding	109	327	57	383	55	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6269_CONTIG_1	10	+	267	2	genic_intron	novelGene_677	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	239	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	95	0.192	0.808	POS	TRUE	Artifact
SAMPLE_1_MOLECULE_1309_CONTIG_1	8	-	2178	15	full-splice_match	PABPC1	ENST00000318607	3485	15	1066	241	multi-exon	FALSE	canonical	0	0	256	2	NA	1	0	FALSE	NA	NA	0	C	coding	636	1908	64	1971	80	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5082_CONTIG_1	8	-	1639	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1092	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5090_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	447	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6390_CONTIG_1	18	+	625	4	full-splice_match	TTR	ENST00000237014	957	4	151	181	multi-exon	FALSE	canonical	0	0	362	2	NA	1	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_631_CONTIG_1	3	+	973	2	incomplete-splice_match	HRG	ENST00000232003	2015	7	752	290	internal_fragment	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	189	567	74	640	40	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5998_CONTIG_1	5	-	1793	13	novel_not_in_catalog	AGXT2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	145	2	NA	0	0	TRUE	NA	NA	0	A	coding	167	501	687	1187	20	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6405_CONTIG_1	1	-	1746	5	full-splice_match	FCGR3B	ENST00000294800	2289	5	258	285	multi-exon	FALSE	canonical	0	0	56	2	NA	1	0	FALSE	NA	NA	0	A	coding	233	699	17	715	15	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4653_CONTIG_1	14	-	1051	6	novel_not_in_catalog	SERPINA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	43	2	NA	0	0	TRUE	NA	NA	0	C	coding	156	468	583	1050	35	0.942	0.058	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8688_CONTIG_1	3	-	672	3	genic	SLC41A3	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	642	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6459_CONTIG_1	5	-	1559	2	genic_intron	novelGene_627	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1448	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.412	0.588	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5295_CONTIG_1	4	-	1329	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	338	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	48	1328	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3347_CONTIG_1	9	-	1523	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	879	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	35	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_669_CONTIG_1	2	+	515	6	full-splice_match	RPS27A	ENST00000272317	1071	6	286	270	multi-exon	FALSE	canonical	0	0	359	2	NA	0	0	FALSE	NA	NA	0	C	coding	156	468	39	506	55	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_278_CONTIG_1	1	-	1032	3	antisense	novelGene_RP11-74C13.3_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	709	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2324_CONTIG_1	19	-	1481	10	incomplete-splice_match	TYK2	ENST00000524462	3456	21	1882	93	5prime_fragment	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	A	coding	393	1179	92	1270	25	0.206	0.794	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4113_CONTIG_1	4	+	1567	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	536	160	internal_fragment	FALSE	canonical	0	0	1406	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	517	1380	35	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4718_CONTIG_1	19	+	386	3	incomplete-splice_match	FTL	ENST00000331825	878	4	410	82	internal_fragment	FALSE	canonical	0	0	172	2	NA	0	0	FALSE	NA	NA	0	C	coding	107	321	2	322	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8195_CONTIG_1	10	+	1602	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	65	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7096_CONTIG_1	5	+	341	3	full-splice_match	UQCRQ	ENST00000378670	839	3	91	407	multi-exon	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4507_CONTIG_1	4	+	1957	15	full-splice_match	ALB	ENST00000295897	2263	15	48	258	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6620_CONTIG_1	5	-	2329	17	full-splice_match	HSPA9	ENST00000297185	3321	17	33	959	multi-exon	TRUE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	A	coding	679	2037	94	2130	25	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3951_CONTIG_1	4	+	1046	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	336	101	internal_fragment	FALSE	canonical	0	0	982	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	93	956	30	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6343_CONTIG_1	16	+	1174	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1084	2	NA	1	0	TRUE	NA	NA	0	C	coding	347	1041	31	1071	10	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4099_CONTIG_1	5	+	1099	12	novel_not_in_catalog	IK	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	922	2	NA	0	0	FALSE	NA	NA	0	A	coding	161	483	70	552	15	0.22	0.78	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3564_CONTIG_1	11	+	1658	2	genic_intron	novelGene_248	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	1581	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.418	0.582	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5539_CONTIG_1	14	-	1161	5	novel_not_in_catalog	SERPINA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	43	2	NA	1	0	TRUE	NA	NA	0	C	coding	325	975	48	1022	40	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5063_CONTIG_1	4	+	1760	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	128	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8533_CONTIG_1	11	-	644	2	incomplete-splice_match	APOA1	ENST00000359492	932	4	256	32	5prime_fragment	FALSE	canonical	0	0	15	2	NA	0	0	FALSE	NA	NA	0	C	coding	158	474	143	616	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5369_CONTIG_1	5	+	752	3	incomplete-splice_match	BTF3	ENST00000514360	1177	5	342	83	internal_fragment	FALSE	canonical	0	0	531	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6427_CONTIG_1	2	+	1152	4	incomplete-splice_match	MYO1B	ENST00000439065	2672	12	797	723	internal_fragment	FALSE	canonical	0	0	395	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.454	0.546	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2239_CONTIG_1	2	-	2424	5	full-splice_match	NFE2L2	ENST00000397062	2853	5	418	11	multi-exon	FALSE	canonical	0	0	182	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_434_CONTIG_1	12	-	575	3	novel_not_in_catalog	UBC	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	64	2	NA	0	0	TRUE	NA	NA	0	C	coding	169	507	68	574	30	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5046_CONTIG_1	18	+	783	8	full-splice_match	NDUFV2	ENST00000318388	930	8	101	46	multi-exon	FALSE	canonical	0	0	669	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	14	760	50	0.234	0.766	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8056_CONTIG_1	4	-	1442	9	full-splice_match	ADH1C	ENST00000515683	1740	9	281	17	multi-exon	FALSE	canonical	0	0	89	2	NA	2	0	FALSE	NA	NA	0	C	coding	166	498	699	1196	25	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1074_CONTIG_1	4	+	2025	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	50	0.95	0.05	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4504_CONTIG_1	1	+	1384	5	novel_in_catalog	C4BPA	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	975	2	NA	3	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7216_CONTIG_1	10	+	933	7	novel_in_catalog	AKR1C1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	679	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	273	719	15	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3841_CONTIG_1	1	-	1488	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	51	55	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	69	1460	15	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6488_CONTIG_1	19	-	1451	14	incomplete-splice_match	ILVBL	ENST00000534378	2067	15	257	359	5prime_fragment	FALSE	canonical	0	0	12	2	NA	1	0	FALSE	NA	NA	0	B	coding	455	1365	87	1451	35	0.558	0.442	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_111_CONTIG_1	11	+	1932	14	full-splice_match	F2	ENST00000311907	2023	14	94	-3	multi-exon	FALSE	canonical	0	0	1687	2	NA	0	0	FALSE	NA	NA	0	C	coding	428	1284	545	1828	20	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1318_CONTIG_1	6	+	1674	11	novel_not_in_catalog	PLG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1018	2	NA	1	0	TRUE	NA	NA	0	C	coding	292	876	232	1107	30	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4888_CONTIG_1	12	+	689	5	novel_in_catalog	ALDH2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	613	2	NA	0	0	FALSE	NA	NA	0	C	coding	200	600	90	689	15	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8668_CONTIG_1	4	+	2005	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	5	0.95	0.05	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1070_CONTIG_1	14	-	298	2	incomplete-splice_match	SERPINA1	ENST00000489769	1562	4	1258	6	5prime_fragment	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1155_CONTIG_1	4	-	2086	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	543	-962	5prime_fragment	FALSE	canonical	0	0	216	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5917_CONTIG_1	19	+	1070	4	full-splice_match	APOE	ENST00000252486	1208	4	70	68	multi-exon	FALSE	canonical	0	0	277	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	42	992	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2548_CONTIG_1	9	+	758	6	full-splice_match	ORM1	ENST00000259396	802	6	42	2	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7229_CONTIG_1	8	-	768	6	incomplete-splice_match	RPL7	ENST00000352983	1101	7	266	67	internal_fragment	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	248	744	21	764	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4978_CONTIG_1	16	-	1041	5	full-splice_match	LCAT	ENST00000570980	1240	5	550	-351	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	250	750	280	1029	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8063_CONTIG_1	4	-	1545	10	full-splice_match	FGG	ENST00000404648	1760	10	193	22	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2963_CONTIG_1	19	+	1161	4	full-splice_match	APOE	ENST00000252486	1208	4	44	3	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2405_CONTIG_1	4	-	2055	6	full-splice_match	UGT2B15	ENST00000338206	2077	6	-24	46	multi-exon	FALSE	canonical	0	0	758	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1397_CONTIG_1	4	+	1162	9	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	764	3prime_fragment	FALSE	canonical	0	0	1097	2	NA	0	0	FALSE	NA	NA	0	C	coding	374	1122	40	1161	45	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5675_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	441	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	48	1022	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6959_CONTIG_1	17	-	1517	6	novel_in_catalog	FXR2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	225	2	NA	0	0	FALSE	NA	NA	0	A	coding	114	342	573	914	0	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1380_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_566_CONTIG_1	14	-	1006	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-10	454	multi-exon	FALSE	canonical	0	0	40	2	NA	1	0	FALSE	NA	NA	0	C	coding	320	960	45	1004	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_469_CONTIG_1	19	+	288	4	novel_not_in_catalog	RPS9	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	196	2	NA	1	1	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4945_CONTIG_1	18	+	548	4	full-splice_match	ELP2	ENST00000541748	674	4	118	8	multi-exon	FALSE	canonical	0	0	387	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5557_CONTIG_1	4	+	2187	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	2033	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	45	0.944	0.056	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_97_CONTIG_1	15	-	2324	9	full-splice_match	GATM	ENST00000396659	2597	9	248	25	multi-exon	FALSE	canonical	0	0	161	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5988_CONTIG_1	5	+	495	2	full-splice_match	NDFIP1	ENST00000503388	4164	2	1321	2348	multi-exon	FALSE	canonical	0	0	378	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_270_CONTIG_1	5	-	1203	7	incomplete-splice_match	F12	ENST00000253496	2049	14	816	30	5prime_fragment	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	300	900	179	1078	40	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6801_CONTIG_1	3	-	1671	14	full-splice_match	HGD	ENST00000283871	2005	14	328	6	multi-exon	FALSE	canonical	0	0	147	2	NA	0	0	FALSE	NA	NA	0	C	coding	445	1335	133	1467	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3916_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7192_CONTIG_1	6	-	1719	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	28	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1376_CONTIG_1	14	-	1012	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	445	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	42	1010	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5200_CONTIG_1	11	+	531	4	full-splice_match	APOC3	ENST00000227667	550	4	15	4	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5814_CONTIG_1	14	-	2311	17	full-splice_match	PRMT5	ENST00000324366	2531	17	187	33	multi-exon	FALSE	canonical	0	0	147	2	NA	0	0	FALSE	NA	NA	0	A	coding	634	1902	47	1948	20	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3025_CONTIG_1	4	-	1419	10	full-splice_match	FGG	ENST00000404648	1760	10	190	151	multi-exon	FALSE	canonical	0	0	128	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	51	1361	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4491_CONTIG_1	7	-	786	8	full-splice_match	SRI	ENST00000265729	2010	8	41	1183	multi-exon	TRUE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	A	coding	198	594	13	606	35	0.294	0.706	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4980_CONTIG_1	3	+	2221	17	full-splice_match	TF	ENST00000402696	2968	17	436	311	multi-exon	FALSE	canonical	0	0	2111	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	50	2143	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6273_CONTIG_1	10	-	918	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	159	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6927_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3947_CONTIG_1	10	-	1832	2	full-splice_match	C10orf10	ENST00000298295	2120	2	1	287	multi-exon	FALSE	canonical	0	0	192	2	NA	0	0	FALSE	NA	NA	0	C	coding	212	636	218	853	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5554_CONTIG_1	4	+	2013	15	full-splice_match	ALB	ENST00000295897	2263	15	50	200	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6709_CONTIG_1	3	+	1600	4	novel_in_catalog	ATP11B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	770	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3496_CONTIG_1	4	+	1999	15	full-splice_match	ALB	ENST00000295897	2263	15	49	215	multi-exon	FALSE	canonical	0	0	1893	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	15	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6518_CONTIG_1	17	+	693	5	novel_not_in_catalog	PIPOX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	463	2	NA	0	0	TRUE	NA	NA	0	B	coding	113	339	131	469	75	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8590_CONTIG_1	9	-	1262	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	0	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	10	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3089_CONTIG_1	4	+	201	3	incomplete-splice_match	ALB	ENST00000515133	665	4	4	460	3prime_fragment	FALSE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8728_CONTIG_1	2	-	2274	8	novel_in_catalog	SFXN5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	B	coding	171	513	17	529	10	0.698	0.302	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_545_CONTIG_1	7	-	1025	11	incomplete-splice_match	TFR2	ENST00000476304	2421	15	305	1091	internal_fragment	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	B	coding	110	330	694	1023	10	0.7	0.3	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2527_CONTIG_1	4	-	1650	13	full-splice_match	GC	ENST00000273951	1972	13	286	36	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	60	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2927_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1731_CONTIG_1	4	-	1549	10	full-splice_match	FGG	ENST00000404648	1760	10	193	18	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2728_CONTIG_1	6	+	2218	17	incomplete-splice_match	CFB	ENST00000425368	2862	18	629	15	internal_fragment	FALSE	canonical	0	0	2023	2	NA	0	0	FALSE	NA	NA	0	C	coding	542	1626	551	2176	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4272_CONTIG_1	4	+	864	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	594	25	internal_fragment	FALSE	canonical	0	0	724	2	NA	3	0	FALSE	NA	NA	0	C	coding	140	420	279	698	65	0.236	0.764	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4050_CONTIG_1	14	-	1009	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-14	455	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	49	1008	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6450_CONTIG_1	16	+	924	5	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	238	2	NA	0	0	TRUE	NA	NA	0	C	coding	243	729	28	756	5	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2220_CONTIG_1	6	-	1916	9	novel_not_in_catalog	RP1-60O19.1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	224	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_995_CONTIG_1	4	-	2156	5	full-splice_match	FGA	ENST00000403106	2248	5	24	68	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	56	1987	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7583_CONTIG_1	1	+	414	3	incomplete-splice_match	C8A	ENST00000361249	2356	11	664	1278	internal_fragment	FALSE	canonical	0	0	287	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.414	0.586	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1550_CONTIG_1	19	-	1056	3	novel_not_in_catalog	LRG1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	55	2	NA	0	0	TRUE	NA	NA	0	C	coding	254	762	24	785	5	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6530_CONTIG_1	4	+	1575	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	184	128	multi-exon	FALSE	canonical	0	0	1172	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4531_CONTIG_1	15	-	1460	6	incomplete-splice_match	GATM	ENST00000396659	2597	9	1000	137	5prime_fragment	FALSE	canonical	0	0	15	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.236	0.764	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_758_CONTIG_1	11	+	531	4	full-splice_match	APOC3	ENST00000227667	550	4	13	6	multi-exon	FALSE	canonical	0	0	228	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	50	346	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6020_CONTIG_1	7	-	297	2	incomplete-splice_match	CAMK2B	ENST00000466584	632	4	306	29	5prime_fragment	FALSE	canonical	0	0	152	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	80	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_408_CONTIG_1	15	+	917	4	full-splice_match	B2M	ENST00000558401	1715	4	36	762	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8329_CONTIG_1	11	+	939	4	incomplete-splice_match	CAT	ENST00000241052	2302	13	1362	1	internal_fragment	FALSE	canonical	0	0	245	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7909_CONTIG_1	11	+	818	7	incomplete-splice_match	ACAT1	ENST00000265838	1761	12	574	369	internal_fragment	FALSE	canonical	0	0	680	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4829_CONTIG_1	10	+	1671	4	full-splice_match	PGAM1	ENST00000334828	1830	4	123	36	multi-exon	FALSE	canonical	0	0	620	2	NA	0	0	FALSE	NA	NA	0	C	coding	254	762	26	787	45	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5402_CONTIG_1	9	-	463	4	incomplete-splice_match	AMBP	ENST00000603230	1057	8	28	566	internal_fragment	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	124	372	92	463	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6707_CONTIG_1	12	-	1085	8	full-splice_match	RPLP0	ENST00000392514	1218	8	104	29	multi-exon	FALSE	canonical	0	0	25	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	74	1024	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4990_CONTIG_1	6	-	355	3	incomplete-splice_match	ALDH8A1	ENST00000367847	1587	6	-3	1235	internal_fragment	FALSE	canonical	0	0	172	2	NA	0	0	FALSE	NA	NA	0	B	coding	107	321	35	355	15	0.54	0.46	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4520_CONTIG_1	9	+	1156	7	novel_not_in_catalog	C8G	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1136	2	NA	0	0	TRUE	NA	NA	0	C	coding	177	531	64	594	40	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_598_CONTIG_1	15	+	480	3	full-splice_match	SERF2	ENST00000249786	1537	3	495	562	multi-exon	FALSE	canonical	0	0	156	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1917_CONTIG_1	4	+	2054	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	35	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4863_CONTIG_1	11	+	849	9	novel_not_in_catalog	F2	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	617	2	NA	0	0	TRUE	NA	NA	0	C	coding	251	753	6	758	20	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2992_CONTIG_1	3	+	1571	7	full-splice_match	AHSG	ENST00000411641	1711	7	133	7	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	87	1187	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6393_CONTIG_1	16	+	1201	5	full-splice_match	HP	ENST00000398131	1252	5	17	34	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6893_CONTIG_1	2	-	2450	16	novel_not_in_catalog	IMMT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	78	2	NA	0	0	TRUE	NA	NA	0	A	coding	697	2091	34	2124	40	0.938	0.062	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1933_CONTIG_1	4	+	1565	12	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1422	2	NA	0	0	TRUE	NA	NA	0	C	coding	430	1290	107	1396	60	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2030_CONTIG_1	19	-	576	3	incomplete-splice_match	A1BG	ENST00000263100	1722	8	883	263	internal_fragment	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6544_CONTIG_1	20	+	947	2	full-splice_match	ID1	ENST00000376112	994	2	6	41	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	155	465	100	564	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_209_CONTIG_1	X	+	1016	6	full-splice_match	SAT1	ENST00000379270	1065	6	0	49	multi-exon	FALSE	canonical	0	0	524	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	180	692	35	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_405_CONTIG_1	4	-	1428	9	full-splice_match	ADH1C	ENST00000515683	1740	9	281	31	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	699	1196	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2018_CONTIG_1	15	+	266	2	full-splice_match	B2M	ENST00000544417	1027	2	-4	765	multi-exon	FALSE	canonical	0	0	101	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2038_CONTIG_1	4	+	326	3	full-splice_match	FGB	ENST00000497097	574	3	-1	249	multi-exon	FALSE	canonical	0	0	314	2	NA	1	0	FALSE	NA	NA	0	C	coding	106	318	9	326	25	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7335_CONTIG_1	11	-	739	4	full-splice_match	FTH1	ENST00000273550	1229	4	203	287	multi-exon	FALSE	canonical	0	0	146	2	NA	1	0	FALSE	NA	NA	0	C	coding	183	549	33	581	10	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7718_CONTIG_1	7	-	1496	10	novel_in_catalog	PON3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	130	2	NA	0	0	FALSE	NA	NA	0	C	coding	402	1206	57	1262	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7977_CONTIG_1	4	+	1645	14	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1489	2	NA	1	0	TRUE	NA	NA	0	C	coding	474	1422	42	1463	40	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4983_CONTIG_1	14	+	1498	6	full-splice_match	CALM1	ENST00000356978	4242	6	46	2698	multi-exon	FALSE	canonical	0	0	623	2	NA	1	0	FALSE	NA	NA	0	A	coding	149	447	203	649	5	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3366_CONTIG_1	4	-	1560	10	full-splice_match	FGG	ENST00000404648	1760	10	193	7	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5711_CONTIG_1	3	+	1362	11	incomplete-splice_match	ITIH3	ENST00000416872	2220	17	0	858	3prime_fragment	TRUE	canonical	0	0	1209	2	NA	0	0	FALSE	NA	NA	0	B	coding	451	1353	9	1361	20	0.676	0.324	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8747_CONTIG_1	17	-	1623	8	full-splice_match	VTN	ENST00000226218	2149	8	515	11	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1834_CONTIG_1	10	+	1568	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	99	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1923_CONTIG_1	10	-	919	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	158	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7094_CONTIG_1	11	-	1676	9	full-splice_match	CTSD	ENST00000236671	2123	9	65	382	multi-exon	FALSE	canonical	0	0	136	2	NA	1	0	FALSE	NA	NA	0	A	coding	412	1236	69	1304	20	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2884_CONTIG_1	4	+	1987	15	full-splice_match	ALB	ENST00000295897	2263	15	50	226	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2991_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	50	161	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2301_CONTIG_1	4	+	1326	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	166	27	internal_fragment	FALSE	canonical	0	0	1220	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	331	1194	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8750_CONTIG_1	4	+	2008	15	full-splice_match	ALB	ENST00000295897	2263	15	50	205	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5002_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-14	447	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	49	1017	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5260_CONTIG_1	19	+	872	4	full-splice_match	FTL	ENST00000331825	878	4	8	-2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5042_CONTIG_1	1	+	1130	7	incomplete-splice_match	TARS2	ENST00000369051	2106	14	885	91	internal_fragment	FALSE	canonical	0	0	538	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7956_CONTIG_1	4	+	2010	15	full-splice_match	ALB	ENST00000295897	2263	15	48	205	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	0	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1386_CONTIG_1	15	+	937	4	full-splice_match	B2M	ENST00000558401	1715	4	36	742	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2120_CONTIG_1	2	+	370	2	incomplete-splice_match	CYP27A1	ENST00000258415	2286	9	395	1521	3prime_fragment	FALSE	canonical	0	0	287	2	NA	0	0	FALSE	NA	NA	0	C	coding	112	336	33	368	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1481_CONTIG_1	6	+	1528	11	incomplete-splice_match	PLG	ENST00000308192	2741	19	1124	89	internal_fragment	FALSE	canonical	0	0	1210	2	NA	0	0	FALSE	NA	NA	0	C	coding	407	1221	149	1369	20	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4362_CONTIG_1	4	-	1487	10	full-splice_match	FGG	ENST00000404648	1760	10	193	80	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5748_CONTIG_1	4	-	1854	9	full-splice_match	ADH4	ENST00000265512	1993	9	0	139	multi-exon	FALSE	canonical	0	0	93	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6378_CONTIG_1	4	+	2023	15	full-splice_match	ALB	ENST00000295897	2263	15	48	192	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_350_CONTIG_1	4	+	1978	15	full-splice_match	ALB	ENST00000295897	2263	15	83	202	multi-exon	FALSE	canonical	0	0	1859	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	7	1833	5	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1276_CONTIG_1	5	+	2007	11	full-splice_match	PPWD1	ENST00000261308	2166	11	46	113	multi-exon	FALSE	canonical	0	0	1823	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.5	0.5	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7572_CONTIG_1	8	-	1648	9	full-splice_match	CLU	ENST00000560366	2841	9	108	1085	multi-exon	FALSE	canonical	0	0	48	2	NA	1	0	FALSE	NA	NA	0	C	coding	448	1344	81	1424	35	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_643_CONTIG_1	17	+	844	2	full-splice_match	OVCA2	ENST00000572195	1025	2	12	169	multi-exon	FALSE	canonical	0	0	187	2	NA	0	0	FALSE	NA	NA	0	A	coding	227	681	4	684	30	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4188_CONTIG_1	6	-	572	6	full-splice_match	RPS10	ENST00000326199	644	6	58	14	multi-exon	FALSE	canonical	0	0	36	2	NA	0	0	FALSE	NA	NA	0	A	coding	165	495	37	531	40	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2079_CONTIG_1	19	+	409	4	full-splice_match	APOC1	ENST00000252491	461	4	44	8	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2953_CONTIG_1	17	-	694	6	novel_not_in_catalog	SLC35B1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	191	2	NA	0	0	TRUE	NA	NA	0	A	coding	100	300	88	387	30	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8539_CONTIG_1	4	+	1872	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	374	17	internal_fragment	FALSE	canonical	0	0	1568	2	NA	2	0	FALSE	NA	NA	0	C	coding	499	1497	46	1542	30	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_594_CONTIG_1	2	-	2152	6	full-splice_match	YWHAQ	ENST00000238081	2208	6	42	14	multi-exon	FALSE	canonical	0	0	32	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1289_CONTIG_1	4	-	1512	10	full-splice_match	FGG	ENST00000404648	1760	10	193	55	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_660_CONTIG_1	3	+	1552	7	full-splice_match	FETUB	ENST00000265029	1627	7	34	41	multi-exon	FALSE	canonical	0	0	847	2	NA	0	0	FALSE	NA	NA	0	A	coding	364	1092	122	1213	40	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6627_CONTIG_1	4	+	2019	15	full-splice_match	ALB	ENST00000295897	2263	15	50	194	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5873_CONTIG_1	19	+	793	2	novel_in_catalog	CIRBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	75	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.244	0.756	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8621_CONTIG_1	4	+	2008	15	full-splice_match	ALB	ENST00000295897	2263	15	50	205	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7267_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5493_CONTIG_1	4	+	1276	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	211	32	internal_fragment	FALSE	canonical	0	0	1175	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	286	1149	20	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5139_CONTIG_1	19	+	406	4	full-splice_match	APOC1	ENST00000252491	461	4	44	11	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6117_CONTIG_1	3	+	1325	10	incomplete-splice_match	TF	ENST00000264998	2143	16	799	19	internal_fragment	FALSE	canonical	0	0	1138	2	NA	0	0	FALSE	NA	NA	0	C	coding	371	1113	58	1170	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1511_CONTIG_1	12	+	1506	15	full-splice_match	PCBP2	ENST00000546463	1457	15	28	-77	multi-exon	FALSE	canonical	0	0	1151	2	NA	1	0	FALSE	NA	NA	0	C	coding	362	1086	100	1185	50	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5196_CONTIG_1	11	+	846	6	full-splice_match	RAB1B	ENST00000311481	2007	6	112	1049	multi-exon	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	A	coding	201	603	36	638	15	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4716_CONTIG_1	19	+	1130	4	full-splice_match	APOE	ENST00000252486	1208	4	42	36	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_745_CONTIG_1	7	+	944	3	incomplete-splice_match	IGFBP1	ENST00000275525	1653	4	680	29	internal_fragment	FALSE	canonical	0	0	264	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8547_CONTIG_1	11	-	1094	2	antisense	novelGene_MALAT1_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	719	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	10	0.552	0.448	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7348_CONTIG_1	17	-	1909	6	full-splice_match	ACTG1	ENST00000331925	1994	6	72	13	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	76	1200	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6214_CONTIG_1	4	+	546	5	incomplete-splice_match	ALB	ENST00000415165	1483	11	792	145	internal_fragment	FALSE	canonical	0	0	526	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	81	500	65	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7623_CONTIG_1	19	-	1440	2	antisense	novelGene_JUNB_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	602	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5036_CONTIG_1	19	+	1341	5	full-splice_match	REEP6	ENST00000233596	1375	5	22	12	multi-exon	FALSE	canonical	0	0	599	2	NA	0	0	FALSE	NA	NA	0	C	coding	184	552	83	634	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2488_CONTIG_1	14	+	800	10	novel_not_in_catalog	PSME1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	573	2	NA	0	0	TRUE	NA	NA	0	C	coding	197	591	61	651	25	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_812_CONTIG_1	11	-	955	4	full-splice_match	APOA1	ENST00000236850	1227	4	268	4	multi-exon	FALSE	canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	99	899	15	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5788_CONTIG_1	7	+	370	4	full-splice_match	NAA38	ENST00000249299	1305	4	137	798	multi-exon	FALSE	canonical	0	0	255	2	NA	0	0	FALSE	NA	NA	0	A	coding	96	288	56	343	40	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3844_CONTIG_1	5	-	1447	10	novel_in_catalog	TMEM161B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	109	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	60	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4592_CONTIG_1	11	-	920	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	280	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4947_CONTIG_1	1	-	1253	5	incomplete-splice_match	C1orf43	ENST00000350592	1610	6	328	29	5prime_fragment	FALSE	canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	A	coding	150	450	97	546	50	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2157_CONTIG_1	15	-	2316	9	full-splice_match	GATM	ENST00000396659	2597	9	247	34	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1497_CONTIG_1	1	+	1173	3	novel_in_catalog	FLAD1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	272	2	NA	1	0	FALSE	NA	NA	0	A	coding	296	888	192	1079	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7628_CONTIG_1	X	-	785	6	novel_not_in_catalog	RPS4X	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	coding	176	528	256	783	15	0.362	0.638	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4027_CONTIG_1	4	+	1792	7	novel_not_in_catalog	UGT2B7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1416	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	85	0.066	0.934	POS	TRUE	Artifact
SAMPLE_1_MOLECULE_5419_CONTIG_1	16	+	496	3	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	117	2	NA	0	0	TRUE	NA	NA	0	C	coding	64	192	141	332	5	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8394_CONTIG_1	15	+	290	4	novel_in_catalog	CGNL1	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	206	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.398	0.602	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3993_CONTIG_1	5	+	1412	12	incomplete-splice_match	HSD17B4	ENST00000509514	2314	20	944	-42	internal_fragment	FALSE	canonical	0	0	1022	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.374	0.626	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2008_CONTIG_1	22	+	1270	4	full-splice_match	SNRPD3	ENST00000215829	1763	4	493	0	multi-exon	FALSE	canonical	0	0	413	2	NA	0	0	FALSE	NA	NA	0	A	coding	126	378	95	472	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4571_CONTIG_1	5	-	756	5	full-splice_match	REEP5	ENST00000379638	3318	5	300	2262	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	A	coding	185	555	62	616	15	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5408_CONTIG_1	19	+	412	4	full-splice_match	APOC1	ENST00000252491	461	4	44	5	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3466_CONTIG_1	5	+	844	5	full-splice_match	SRP19	ENST00000505459	2841	5	70	1927	multi-exon	FALSE	canonical	0	0	386	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6446_CONTIG_1	9	+	755	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	570	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	31	633	20	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_151_CONTIG_1	4	-	825	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	554	288	5prime_fragment	FALSE	canonical	0	0	205	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	266	763	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6824_CONTIG_1	10	+	1809	13	incomplete-splice_match	EDRF1	ENST00000368815	4123	25	133	2181	3prime_fragment	TRUE	canonical	0	0	1596	2	NA	0	0	FALSE	NA	NA	0	A	coding	570	1710	100	1809	40	0.506	0.494	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3778_CONTIG_1	19	-	1620	8	full-splice_match	A1BG	ENST00000263100	1722	8	7	95	multi-exon	FALSE	canonical	0	0	89	2	NA	1	0	FALSE	NA	NA	0	C	coding	495	1485	56	1540	20	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4904_CONTIG_1	3	+	2294	17	full-splice_match	TF	ENST00000402696	2968	17	437	237	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	30	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8633_CONTIG_1	10	-	921	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	156	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2426_CONTIG_1	12	+	1608	4	full-splice_match	RITA1	ENST00000548278	2053	4	195	250	multi-exon	FALSE	canonical	0	0	799	2	NA	0	0	FALSE	NA	NA	0	A	coding	269	807	498	1304	25	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1313_CONTIG_1	2	+	1508	10	incomplete-splice_match	HADHB	ENST00000317799	2044	16	518	18	internal_fragment	FALSE	canonical	0	0	975	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5158_CONTIG_1	14	-	1165	2	antisense	novelGene_SERPINA3_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	254	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2099_CONTIG_1	15	+	1407	14	full-splice_match	FAH	ENST00000561421	1549	14	117	25	multi-exon	FALSE	canonical	0	0	1221	2	NA	1	0	FALSE	NA	NA	0	C	coding	419	1257	42	1298	25	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7859_CONTIG_1	15	+	946	4	full-splice_match	B2M	ENST00000558401	1715	4	36	733	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6883_CONTIG_1	4	+	2034	15	full-splice_match	ALB	ENST00000295897	2263	15	48	181	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5778_CONTIG_1	6	+	1760	3	full-splice_match	BAG2	ENST00000370693	6651	3	-13	4904	multi-exon	FALSE	canonical	0	0	608	2	NA	0	0	FALSE	NA	NA	0	C	coding	211	633	386	1018	30	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7602_CONTIG_1	14	+	2140	5	full-splice_match	SERPINA5	ENST00000554866	2211	5	62	9	multi-exon	FALSE	canonical	0	0	1090	2	NA	1	0	FALSE	NA	NA	0	C	coding	406	1218	53	1270	35	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_283_CONTIG_1	16	+	1104	3	full-splice_match	HP	ENST00000566821	3024	3	1906	14	multi-exon	FALSE	canonical	0	0	175	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	268	951	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7557_CONTIG_1	6	-	771	7	full-splice_match	GSTA1	ENST00000334575	1019	7	83	165	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	74	739	40	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7017_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1272_CONTIG_1	4	+	1400	11	full-splice_match	ALB	ENST00000511370	1519	11	44	75	multi-exon	FALSE	canonical	0	0	1342	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	453	1316	15	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6218_CONTIG_1	18	+	605	4	full-splice_match	TTR	ENST00000237014	957	4	151	201	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4397_CONTIG_1	2	+	2345	14	incomplete-splice_match	XRCC5	ENST00000392132	3428	21	1040	43	internal_fragment	FALSE	canonical	0	0	1284	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.348	0.652	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2412_CONTIG_1	16	+	385	3	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	126	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7565_CONTIG_1	16	+	456	5	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	258	2	NA	0	0	TRUE	NA	NA	0	C	coding	104	312	28	339	15	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6502_CONTIG_1	12	+	414	4	incomplete-splice_match	ALDH2	ENST00000416293	1572	12	545	613	internal_fragment	FALSE	canonical	0	0	308	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	32	412	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4490_CONTIG_1	2	-	1263	9	full-splice_match	SUCLG1	ENST00000393868	1475	9	203	9	multi-exon	FALSE	canonical	0	0	105	2	NA	1	0	FALSE	NA	NA	0	C	coding	333	999	48	1046	20	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3590_CONTIG_1	17	+	706	3	full-splice_match	CCL2	ENST00000225831	741	3	0	35	multi-exon	FALSE	canonical	0	0	259	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2161_CONTIG_1	4	+	1648	8	full-splice_match	FGB	ENST00000302068	1975	8	59	268	multi-exon	FALSE	canonical	0	0	1248	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8343_CONTIG_1	9	-	293	3	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3494_CONTIG_1	12	+	1489	9	novel_in_catalog	ALDH2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1082	2	NA	0	0	FALSE	NA	NA	0	C	coding	327	981	132	1112	50	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_810_CONTIG_1	19	+	852	4	full-splice_match	FTL	ENST00000331825	878	4	8	18	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1697_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5346_CONTIG_1	10	+	1318	9	full-splice_match	GHITM	ENST00000372134	2128	9	107	703	multi-exon	FALSE	canonical	0	0	1039	2	NA	1	0	FALSE	NA	NA	0	C	coding	345	1035	87	1121	45	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5764_CONTIG_1	1	-	1936	9	incomplete-splice_match	CYP4A11	ENST00000462347	1775	10	296	-457	5prime_fragment	FALSE	canonical	0	0	72	2	NA	3	0	FALSE	NA	NA	0	B	coding	317	951	48	998	35	0.634	0.366	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2877_CONTIG_1	5	-	1400	8	full-splice_match	GNB2L1	ENST00000512805	1403	8	8	-5	multi-exon	FALSE	canonical	0	0	510	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	402	1352	10	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6495_CONTIG_1	17	-	1679	2	full-splice_match	RASD1	ENST00000225688	1746	2	-2	69	multi-exon	FALSE	canonical	0	0	500	2	NA	0	0	FALSE	NA	NA	0	C	coding	281	843	215	1057	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7833_CONTIG_1	1	-	904	6	full-splice_match	PRDX1	ENST00000319248	1021	6	72	45	multi-exon	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	C	coding	199	597	68	664	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3965_CONTIG_1	10	-	1844	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	70	9	multi-exon	FALSE	canonical	0	0	193	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1180_CONTIG_1	6	-	2437	13	full-splice_match	MUT	ENST00000274813	3749	13	11	1301	multi-exon	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.172	0.828	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3454_CONTIG_1	17	-	1148	8	full-splice_match	APOH	ENST00000205948	1176	8	7	21	multi-exon	FALSE	canonical	0	0	95	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_334_CONTIG_1	19	+	1107	5	novel_in_catalog	OAZ1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	625	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.492	0.508	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4276_CONTIG_1	16	+	1463	8	novel_in_catalog	PDXDC1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	588	2	NA	0	0	FALSE	NA	NA	0	B	coding	230	690	72	761	15	0.66	0.34	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1431_CONTIG_1	10	-	887	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	190	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5217_CONTIG_1	10	-	1540	4	incomplete-splice_match	PBLD	ENST00000309049	2165	10	616	9	5prime_fragment	FALSE	canonical	0	0	81	2	NA	1	0	FALSE	NA	NA	0	B	coding	39	117	317	433	60	0.5	0.5	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_289_CONTIG_1	19	+	1166	4	full-splice_match	APOE	ENST00000252486	1208	4	42	0	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	0	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4047_CONTIG_1	2	+	2213	5	novel_in_catalog	CFLAR	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	981	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_948_CONTIG_1	10	+	1391	4	incomplete-splice_match	ABCC2	ENST00000370449	5312	32	4231	-310	internal_fragment	FALSE	canonical	0	0	390	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4812_CONTIG_1	2	+	1980	16	full-splice_match	HADHB	ENST00000317799	2044	16	44	20	multi-exon	FALSE	canonical	0	0	1449	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	61	1482	45	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3928_CONTIG_1	5	-	346	5	novel_not_in_catalog	ANXA6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	88	2	NA	0	0	TRUE	NA	NA	0	B	coding	72	216	114	329	5	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4308_CONTIG_1	6	+	1688	11	incomplete-splice_match	PLG	ENST00000308192	2741	19	1019	34	internal_fragment	FALSE	canonical	0	0	1315	2	NA	0	0	FALSE	NA	NA	0	C	coding	407	1221	254	1474	25	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5142_CONTIG_1	5	+	1463	6	full-splice_match	B4GALT7	ENST00000029410	1747	6	41	243	multi-exon	FALSE	canonical	0	0	898	2	NA	0	0	FALSE	NA	NA	0	A	coding	327	981	71	1051	10	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5945_CONTIG_1	6	+	1310	7	novel_not_in_catalog	HMGA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1197	2	NA	0	0	TRUE	NA	NA	0	B	coding	107	321	250	570	10	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_590_CONTIG_1	9	+	725	6	full-splice_match	ORM1	ENST00000259396	802	6	42	35	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2723_CONTIG_1	GL000220.1	-	894	2	antisense	novelGene_RNA28S5_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	336	2	NA	2	1	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.448	0.552	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7878_CONTIG_1	4	-	1556	10	full-splice_match	FGG	ENST00000404648	1760	10	193	11	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7263_CONTIG_1	1	-	620	5	incomplete-splice_match	GBP7	ENST00000294671	2454	11	1240	594	5prime_fragment	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	A	coding	206	618	1	618	45	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5685_CONTIG_1	2	-	1091	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	1095	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	45	581	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8700_CONTIG_1	16	+	1761	2	novel_in_catalog	HP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	869	2	NA	0	0	FALSE	NA	NA	0	C	coding	307	921	725	1645	10	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3350_CONTIG_1	5	-	1857	11	incomplete-splice_match	DMGDH	ENST00000255189	3097	16	943	297	5prime_fragment	FALSE	canonical	0	0	80	2	NA	0	0	FALSE	NA	NA	0	A	coding	549	1647	38	1684	55	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8180_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	17	-1	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8215_CONTIG_1	10	+	1652	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	15	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6432_CONTIG_1	2	-	752	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	1434	multi-exon	FALSE	canonical	0	0	164	2	NA	1	0	FALSE	NA	NA	0	C	coding	179	537	45	581	40	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_348_CONTIG_1	4	+	1382	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	164	-27	internal_fragment	FALSE	canonical	0	0	1222	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	333	1196	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6360_CONTIG_1	14	+	726	2	novel_not_in_catalog	ANG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	92	2	NA	1	0	FALSE	NA	NA	0	C	coding	147	441	111	551	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2972_CONTIG_1	5	-	1228	8	full-splice_match	LMAN2	ENST00000303127	1800	8	176	396	multi-exon	FALSE	canonical	0	0	225	2	NA	1	0	FALSE	NA	NA	0	C	coding	356	1068	30	1097	15	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7428_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	48	158	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1240_CONTIG_1	4	+	1000	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	397	86	internal_fragment	FALSE	canonical	0	0	921	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	32	895	45	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3482_CONTIG_1	2	-	1921	7	novel_not_in_catalog	MOB1A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	169	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7638_CONTIG_1	4	+	2039	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1895	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	60	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4243_CONTIG_1	19	+	1264	4	incomplete-splice_match	HNRNPM	ENST00000600806	2373	14	1048	61	internal_fragment	FALSE	canonical	0	0	905	2	NA	0	0	FALSE	NA	NA	0	B	coding	327	981	86	1066	10	0.572	0.428	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2297_CONTIG_1	1	+	2053	3	novel_in_catalog	C4BPA	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	980	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1235_CONTIG_1	4	-	2281	7	full-splice_match	HSD17B13	ENST00000328546	2397	7	24	92	multi-exon	FALSE	canonical	0	0	251	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1756_CONTIG_1	11	+	1268	6	incomplete-splice_match	SERPING1	ENST00000378324	1751	7	482	1	internal_fragment	FALSE	canonical	0	0	749	2	NA	0	0	FALSE	NA	NA	0	C	coding	191	573	428	1000	5	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8336_CONTIG_1	4	-	2346	7	full-splice_match	HSD17B13	ENST00000328546	2397	7	24	27	multi-exon	FALSE	canonical	0	0	251	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_942_CONTIG_1	8	-	1878	9	full-splice_match	CLU	ENST00000405140	2098	9	33	187	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	286	1629	5	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4818_CONTIG_1	4	+	2008	15	full-splice_match	ALB	ENST00000295897	2263	15	51	204	multi-exon	FALSE	canonical	0	0	1891	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	0	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7509_CONTIG_1	5	+	1596	5	full-splice_match	GPX3	ENST00000388825	1636	5	28	12	multi-exon	FALSE	canonical	0	0	523	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7184_CONTIG_1	11	-	1494	10	full-splice_match	HPX	ENST00000265983	1652	10	77	81	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2691_CONTIG_1	11	+	2157	13	full-splice_match	CAT	ENST00000241052	2302	13	6	139	multi-exon	FALSE	canonical	0	0	1601	2	NA	0	0	FALSE	NA	NA	0	C	coding	527	1581	84	1664	30	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5093_CONTIG_1	12	+	2085	10	full-splice_match	LTBR	ENST00000228918	2260	10	149	26	multi-exon	FALSE	canonical	0	0	1207	2	NA	0	0	FALSE	NA	NA	0	C	coding	435	1305	178	1482	60	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_766_CONTIG_1	7	+	1366	5	antisense	novelGene_LINC-PINT_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	1302	2	NA	4	4	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.35	0.65	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3031_CONTIG_1	12	-	961	6	full-splice_match	ARL1	ENST00000261636	3241	6	51	2229	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7943_CONTIG_1	2	+	1820	6	incomplete-splice_match	TANK	ENST00000259075	2152	8	304	28	internal_fragment	FALSE	canonical	0	0	1002	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3710_CONTIG_1	19	-	1566	15	incomplete-splice_match	C3	ENST00000245907	5263	41	3514	183	5prime_fragment	FALSE	canonical	0	0	68	2	NA	0	0	FALSE	NA	NA	0	B	coding	482	1446	120	1565	25	0.706	0.294	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1202_CONTIG_1	4	+	1819	13	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1663	2	NA	3	0	TRUE	NA	NA	0	C	coding	562	1686	40	1725	25	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4472_CONTIG_1	16	+	389	3	full-splice_match	MT1E	ENST00000306061	704	3	308	7	multi-exon	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4849_CONTIG_1	1	-	273	3	novel_not_in_catalog	MRPL24	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	75	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2570_CONTIG_1	10	+	1582	9	novel_not_in_catalog	CYP2E1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1282	2	NA	0	0	FALSE	NA	NA	0	C	coding	477	1431	34	1464	50	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4828_CONTIG_1	8	-	1144	5	incomplete-splice_match	CLU	ENST00000405140	2098	9	743	211	5prime_fragment	FALSE	canonical	0	0	401	2	NA	0	0	FALSE	NA	NA	0	C	coding	296	888	32	919	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1543_CONTIG_1	2	-	1435	2	antisense	novelGene_NBEAL1_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1402	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.258	0.742	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1678_CONTIG_1	11	-	1088	6	full-splice_match	GLYAT	ENST00000344743	1735	6	18	629	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	296	888	125	1012	55	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2481_CONTIG_1	X	+	738	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1433	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3936_CONTIG_1	10	-	380	2	incomplete-splice_match	NRP1	ENST00000374822	2213	12	-13	1846	internal_fragment	FALSE	canonical	0	0	346	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.424	0.576	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5119_CONTIG_1	2	+	482	4	full-splice_match	COX5B	ENST00000258424	712	4	38	192	multi-exon	FALSE	canonical	0	0	286	2	NA	0	0	FALSE	NA	NA	0	C	coding	129	387	10	396	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5006_CONTIG_1	3	+	977	7	incomplete-splice_match	PLS1	ENST00000497002	2258	16	1346	-65	internal_fragment	FALSE	canonical	0	0	728	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3227_CONTIG_1	1	-	462	4	full-splice_match	APOA2	ENST00000367990	474	4	0	12	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2911_CONTIG_1	11	+	942	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	46	multi-exon	FALSE	canonical	0	0	472	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2557_CONTIG_1	4	+	1574	8	full-splice_match	FGB	ENST00000302068	1975	8	62	339	multi-exon	FALSE	canonical	0	0	1245	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	2	1474	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1563_CONTIG_1	5	+	1054	8	incomplete-splice_match	IQGAP2	ENST00000379730	5598	35	-51	4595	3prime_fragment	FALSE	canonical	0	0	913	2	NA	0	0	FALSE	NA	NA	0	B	coding	260	780	274	1053	65	0.68	0.32	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_756_CONTIG_1	19	+	871	2	novel_not_in_catalog	CYP2B6	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	386	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3896_CONTIG_1	9	-	1545	4	full-splice_match	ECM2	ENST00000395534	612	4	0	-933	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5590_CONTIG_1	3	+	1502	7	full-splice_match	AHSG	ENST00000411641	1711	7	133	76	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	87	1187	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4631_CONTIG_1	18	-	668	2	genic_intron	novelGene_85	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	644	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.214	0.786	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6608_CONTIG_1	4	+	1577	11	incomplete-splice_match	HGFAC	ENST00000382774	2148	14	570	1	internal_fragment	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	B	coding	75	225	1286	1510	15	0.672	0.328	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_662_CONTIG_1	11	-	1097	6	full-splice_match	GLYAT	ENST00000344743	1735	6	18	620	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	296	888	125	1012	45	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6864_CONTIG_1	X	+	802	2	genic_intron	novelGene_510	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	647	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4886_CONTIG_1	2	-	1589	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	597	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	45	581	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2565_CONTIG_1	5	-	1977	14	novel_not_in_catalog	F12	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	75	2	NA	0	0	FALSE	NA	NA	0	C	coding	653	1959	19	1977	50	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1128_CONTIG_1	4	+	301	4	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	223	2	NA	0	0	TRUE	NA	NA	0	C	coding	44	132	169	300	65	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2807_CONTIG_1	4	+	2016	15	full-splice_match	ALB	ENST00000295897	2263	15	50	197	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4439_CONTIG_1	10	-	895	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	182	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_42_CONTIG_1	12	-	859	7	full-splice_match	ARPC3	ENST00000228825	1014	7	70	85	multi-exon	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3444_CONTIG_1	5	-	1307	8	full-splice_match	CD74	ENST00000353334	1449	8	171	-29	multi-exon	FALSE	canonical	0	0	134	2	NA	0	0	FALSE	NA	NA	0	C	coding	232	696	10	705	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4180_CONTIG_1	2	+	697	8	novel_not_in_catalog	AGXT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	639	2	NA	0	0	TRUE	NA	NA	0	C	coding	214	642	12	653	5	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4879_CONTIG_1	5	-	2006	14	full-splice_match	F12	ENST00000253496	2049	14	30	13	multi-exon	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	615	1845	20	1864	50	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7503_CONTIG_1	4	+	1588	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	521	154	internal_fragment	FALSE	canonical	0	0	1421	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	7	1395	25	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2784_CONTIG_1	16	+	1185	5	full-splice_match	HP	ENST00000398131	1252	5	17	50	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7730_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	50	202	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5964_CONTIG_1	10	+	1372	8	incomplete-splice_match	CYP2E1	ENST00000252945	1667	9	266	29	internal_fragment	FALSE	canonical	0	0	1064	2	NA	0	0	FALSE	NA	NA	0	C	coding	414	1242	5	1246	55	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6329_CONTIG_1	12	-	661	2	full-splice_match	CCNT1	ENST00000551989	726	2	-196	261	multi-exon	TRUE	canonical	0	0	415	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2852_CONTIG_1	16	+	1331	6	novel_not_in_catalog	HERPUD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	584	2	NA	1	0	TRUE	NA	NA	0	A	coding	231	693	54	746	25	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2809_CONTIG_1	11	-	878	9	novel_not_in_catalog	HPX	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	107	2	NA	1	0	TRUE	NA	NA	0	C	coding	284	852	25	876	10	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1635_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3216_CONTIG_1	12	+	863	4	incomplete-splice_match	TAPBPL	ENST00000539384	1611	7	743	5	internal_fragment	FALSE	canonical	0	0	579	2	NA	0	0	FALSE	NA	NA	0	A	coding	207	621	72	692	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2410_CONTIG_1	4	+	369	3	full-splice_match	FGB	ENST00000497097	574	3	0	205	multi-exon	FALSE	canonical	0	0	313	2	NA	0	0	FALSE	NA	NA	0	C	coding	120	360	8	367	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4252_CONTIG_1	11	-	847	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	52	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	0	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_361_CONTIG_1	4	+	2044	15	full-splice_match	ALB	ENST00000295897	2263	15	50	169	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3688_CONTIG_1	X	+	756	6	full-splice_match	TIMP1	ENST00000218388	892	6	126	10	multi-exon	FALSE	canonical	0	0	497	2	NA	0	0	FALSE	NA	NA	0	C	coding	207	621	45	665	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2155_CONTIG_1	9	+	760	6	full-splice_match	ORM1	ENST00000259396	802	6	42	0	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2624_CONTIG_1	9	-	1574	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	828	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	65	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4357_CONTIG_1	9	+	761	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-1	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_486_CONTIG_1	4	+	336	5	full-splice_match	RPL34	ENST00000394667	441	5	11	94	multi-exon	FALSE	canonical	0	0	302	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5465_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	50	163	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6081_CONTIG_1	16	+	1692	15	full-splice_match	CTU2	ENST00000453996	1751	15	58	1	multi-exon	FALSE	canonical	0	0	1488	2	NA	0	0	FALSE	NA	NA	0	A	coding	515	1545	11	1555	25	0.522	0.478	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6879_CONTIG_1	11	-	893	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	6	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_46_CONTIG_1	4	+	2055	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	288	864	1004	1867	35	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7705_CONTIG_1	9	-	1242	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	20	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_900_CONTIG_1	17	+	642	4	full-splice_match	EIF1	ENST00000469257	2330	4	-8	1696	multi-exon	FALSE	canonical	0	0	451	2	NA	0	0	FALSE	NA	NA	0	C	coding	113	339	155	493	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_293_CONTIG_1	3	-	1397	7	incomplete-splice_match	RPN1	ENST00000296255	2310	10	817	96	5prime_fragment	FALSE	canonical	0	0	75	2	NA	3	0	FALSE	NA	NA	0	B	coding	294	882	172	1053	20	0.638	0.362	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4853_CONTIG_1	14	+	736	2	full-splice_match	ANG	ENST00000397990	742	2	-10	16	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	131	571	40	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7726_CONTIG_1	4	-	1034	7	incomplete-splice_match	ADH1B	ENST00000394887	4059	9	-2	3027	internal_fragment	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	71	1033	20	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5034_CONTIG_1	14	+	519	6	incomplete-splice_match	ASPG	ENST00000455920	1844	16	1173	152	internal_fragment	FALSE	canonical	0	0	507	2	NA	0	0	FALSE	NA	NA	0	B	coding	93	279	241	519	15	0.566	0.434	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7500_CONTIG_1	11	+	1470	6	incomplete-splice_match	SERPING1	ENST00000378324	1751	7	287	-6	internal_fragment	FALSE	canonical	0	0	944	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	173	1195	0	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1287_CONTIG_1	7	-	873	6	full-splice_match	TMEM176B	ENST00000429904	1206	6	308	25	multi-exon	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	273	665	60	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3839_CONTIG_1	4	-	1616	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	51	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4360_CONTIG_1	4	+	2033	15	full-splice_match	ALB	ENST00000295897	2263	15	50	180	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_599_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	48	162	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2452_CONTIG_1	9	-	1582	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	820	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1323_CONTIG_1	14	-	1013	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	449	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	47	1012	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8035_CONTIG_1	4	+	1658	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	230	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5642_CONTIG_1	4	-	890	4	incomplete-splice_match	PPM1K	ENST00000295908	1940	6	17	1033	internal_fragment	FALSE	canonical	0	0	156	2	NA	0	0	FALSE	NA	NA	0	A	coding	225	675	216	890	55	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5857_CONTIG_1	19	-	1464	14	incomplete-splice_match	C3	ENST00000245907	5263	41	3656	143	5prime_fragment	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	B	coding	465	1395	32	1426	20	0.7	0.3	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6464_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	48	159	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8667_CONTIG_1	19	-	1960	18	incomplete-splice_match	C3	ENST00000245907	5263	41	3107	196	5prime_fragment	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	B	coding	644	1932	29	1960	15	0.668	0.332	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7061_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	446	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	47	1015	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7418_CONTIG_1	18	+	616	4	full-splice_match	TTR	ENST00000237014	957	4	151	190	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7712_CONTIG_1	3	+	1946	7	full-splice_match	HRG	ENST00000232003	2015	7	63	6	multi-exon	FALSE	canonical	0	0	758	2	NA	0	0	FALSE	NA	NA	0	C	coding	525	1575	18	1592	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_670_CONTIG_1	3	+	1461	15	incomplete-splice_match	ABCF3	ENST00000292808	2453	21	815	177	internal_fragment	TRUE	canonical	0	0	1172	2	NA	0	0	FALSE	NA	NA	0	A	coding	390	1170	159	1328	15	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3700_CONTIG_1	4	+	1593	8	full-splice_match	FGB	ENST00000302068	1975	8	57	325	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3748_CONTIG_1	6	+	374	5	full-splice_match	RPS18	ENST00000496813	642	5	0	268	multi-exon	FALSE	canonical	0	0	312	2	NA	0	0	FALSE	NA	NA	0	C	coding	117	351	22	372	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4093_CONTIG_1	1	-	1987	12	full-splice_match	C8B	ENST00000371237	2037	12	0	50	multi-exon	FALSE	canonical	0	0	159	2	NA	0	0	FALSE	NA	NA	0	C	coding	591	1773	68	1840	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7991_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7086_CONTIG_1	1	-	1011	2	novel_not_in_catalog	CYP4A11	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	764	2	NA	1	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7966_CONTIG_1	15	+	1786	12	novel_in_catalog	USP8	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1549	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.71	0.29	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5995_CONTIG_1	12	+	1286	9	full-splice_match	GAPDH	ENST00000229239	1875	9	590	-1	multi-exon	FALSE	canonical	0	0	1014	2	NA	0	0	FALSE	NA	NA	0	C	coding	335	1005	77	1081	10	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3240_CONTIG_1	3	+	837	4	incomplete-splice_match	HRG	ENST00000232003	2015	7	570	608	internal_fragment	FALSE	canonical	0	0	251	2	NA	0	0	FALSE	NA	NA	0	C	coding	189	567	256	822	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4387_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4164_CONTIG_1	11	+	530	4	full-splice_match	APOC3	ENST00000227667	550	4	17	3	multi-exon	FALSE	canonical	0	0	224	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	46	342	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5698_CONTIG_1	5	+	773	5	novel_not_in_catalog	SUB1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	647	2	NA	2	0	FALSE	NA	NA	0	A	coding	148	444	54	497	10	0.27	0.73	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6407_CONTIG_1	1	-	598	4	incomplete-splice_match	HMGCS2	ENST00000544913	1925	9	1138	189	5prime_fragment	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	C	coding	45	135	187	321	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6548_CONTIG_1	9	-	1419	7	full-splice_match	FBP1	ENST00000375326	1462	7	-18	61	multi-exon	FALSE	canonical	0	0	385	2	NA	0	0	FALSE	NA	NA	0	C	coding	338	1014	216	1229	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6271_CONTIG_1	3	+	1670	7	full-splice_match	SLC25A38	ENST00000273158	2123	7	225	228	multi-exon	FALSE	canonical	0	0	944	2	NA	0	0	FALSE	NA	NA	0	A	coding	177	531	534	1064	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5332_CONTIG_1	1	-	1419	6	full-splice_match	TMEM9	ENST00000367334	1529	6	16	94	multi-exon	FALSE	canonical	0	0	34	2	NA	1	0	FALSE	NA	NA	0	A	coding	183	549	71	619	25	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_110_CONTIG_1	4	+	827	7	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	1101	3prime_fragment	FALSE	canonical	0	0	754	2	NA	0	0	FALSE	NA	NA	0	C	coding	262	786	42	827	40	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7038_CONTIG_1	16	+	929	2	incomplete-splice_match	HP	ENST00000398131	1252	5	274	49	internal_fragment	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	128	811	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5451_CONTIG_1	12	+	987	4	full-splice_match	PEBP1	ENST00000261313	1697	4	266	444	multi-exon	FALSE	canonical	0	0	432	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	87	647	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3677_CONTIG_1	9	+	1450	15	full-splice_match	ASS1	ENST00000352480	1564	15	32	82	multi-exon	FALSE	canonical	0	0	1233	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	41	1276	25	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5609_CONTIG_1	4	+	1595	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	463	205	internal_fragment	FALSE	canonical	0	0	1479	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	65	1453	0	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3573_CONTIG_1	7	+	1348	2	intergenic	novelGene_669	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1327	2	NA	2	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.466	0.534	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1014_CONTIG_1	2	-	415	3	full-splice_match	MYEOV2	ENST00000607357	418	3	-2	5	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7856_CONTIG_1	9	-	540	4	novel_in_catalog	RPS6	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	47	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	42	539	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6638_CONTIG_1	7	-	1223	12	full-splice_match	TMEM120A	ENST00000493111	1032	12	-51	-140	multi-exon	TRUE	canonical	0	0	132	2	NA	0	0	FALSE	NA	NA	0	A	coding	257	771	310	1080	25	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8734_CONTIG_1	4	+	1559	8	full-splice_match	FGB	ENST00000302068	1975	8	59	357	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8092_CONTIG_1	11	-	1159	4	incomplete-splice_match	FAM160A2	ENST00000449352	3354	12	2121	74	5prime_fragment	FALSE	canonical	0	0	358	2	NA	0	0	FALSE	NA	NA	0	A	coding	305	915	145	1059	35	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5806_CONTIG_1	16	+	603	2	full-splice_match	MT2A	ENST00000561491	581	2	-19	-3	multi-exon	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	0	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3858_CONTIG_1	2	-	674	5	full-splice_match	ATP5G3	ENST00000284727	5484	5	2898	1912	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	A	coding	142	426	128	553	50	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3196_CONTIG_1	11	+	1240	3	full-splice_match	NNMT	ENST00000299964	1610	3	630	-260	multi-exon	FALSE	canonical	0	0	464	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	103	894	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5022_CONTIG_1	17	-	1583	8	full-splice_match	VTN	ENST00000226218	2149	8	525	41	multi-exon	FALSE	canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	95	1528	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3120_CONTIG_1	2	+	1752	5	full-splice_match	UGT1A4	ENST00000373409	2388	5	582	54	multi-exon	FALSE	canonical	0	0	768	2	NA	0	0	FALSE	NA	NA	0	C	coding	330	990	74	1063	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3814_CONTIG_1	11	-	484	2	full-splice_match	IFITM3	ENST00000399808	808	2	202	122	multi-exon	FALSE	canonical	0	0	284	2	NA	0	0	FALSE	NA	NA	0	C	coding	133	399	36	434	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_106_CONTIG_1	19	+	711	7	novel_not_in_catalog	PLD3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	676	2	NA	0	0	TRUE	NA	NA	0	B	coding	179	537	173	709	20	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4791_CONTIG_1	14	-	1333	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	71	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	5	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1889_CONTIG_1	9	-	1466	8	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	125	860	5prime_fragment	FALSE	canonical	0	0	113	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	1	1092	25	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7173_CONTIG_1	11	+	749	6	full-splice_match	RPS3	ENST00000524851	866	6	-28	145	multi-exon	FALSE	canonical	0	0	571	2	NA	0	0	FALSE	NA	NA	0	C	coding	238	714	34	747	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8506_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	50	162	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4761_CONTIG_1	4	+	1881	8	full-splice_match	FGB	ENST00000302068	1975	8	63	31	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1019_CONTIG_1	4	-	1540	10	full-splice_match	FGG	ENST00000404648	1760	10	193	27	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8614_CONTIG_1	10	-	394	2	incomplete-splice_match	NRP1	ENST00000374822	2213	12	-27	1846	internal_fragment	FALSE	canonical	0	0	360	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.422	0.578	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5732_CONTIG_1	GL000195.1	-	2328	4	novel_not_in_catalog	AC011043.1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	118	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.932	0.068	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6624_CONTIG_1	14	-	1010	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	453	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7386_CONTIG_1	11	-	1599	6	genic	PCSK7	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1282	2	NA	4	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8192_CONTIG_1	1	+	1359	5	novel_in_catalog	GALNT2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	355	2	NA	0	0	FALSE	NA	NA	0	B	coding	86	258	239	496	45	0.564	0.436	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3221_CONTIG_1	4	+	1568	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	505	190	internal_fragment	FALSE	canonical	0	0	1437	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	23	1411	50	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4910_CONTIG_1	7	-	1501	6	incomplete-splice_match	HIBADH	ENST00000428288	1669	7	171	-3	5prime_fragment	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5163_CONTIG_1	1	+	1102	7	incomplete-splice_match	EPHX1	ENST00000272167	1660	9	345	213	internal_fragment	FALSE	canonical	0	0	901	2	NA	0	0	FALSE	NA	NA	0	C	coding	310	930	171	1100	10	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_901_CONTIG_1	16	+	1087	3	full-splice_match	HP	ENST00000566821	3024	3	1933	4	multi-exon	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	241	924	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_702_CONTIG_1	3	+	1493	12	incomplete-splice_match	TF	ENST00000402696	2968	17	439	1036	3prime_fragment	FALSE	canonical	0	0	1376	2	NA	0	0	FALSE	NA	NA	0	C	coding	482	1446	47	1492	25	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1009_CONTIG_1	10	-	1986	9	incomplete-splice_match	PBLD	ENST00000309049	2165	10	159	20	5prime_fragment	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	B	coding	288	864	27	890	25	0.704	0.296	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2566_CONTIG_1	4	-	1404	10	full-splice_match	FGG	ENST00000404648	1760	10	193	163	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2381_CONTIG_1	16	+	2021	14	full-splice_match	ACSM3	ENST00000289416	2845	14	346	478	multi-exon	FALSE	canonical	0	0	1803	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4370_CONTIG_1	5	-	486	5	full-splice_match	RPS14	ENST00000401695	1599	5	8	1105	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	149	447	40	486	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4338_CONTIG_1	3	+	922	6	full-splice_match	RAB7A	ENST00000265062	2244	6	38	1284	multi-exon	FALSE	canonical	0	0	736	2	NA	0	0	FALSE	NA	NA	0	A	coding	207	621	209	829	35	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_714_CONTIG_1	1	-	922	6	full-splice_match	PRDX1	ENST00000319248	1021	6	74	25	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	199	597	66	662	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4937_CONTIG_1	11	-	1553	10	full-splice_match	HPX	ENST00000265983	1652	10	77	22	multi-exon	FALSE	canonical	0	0	107	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	20	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2687_CONTIG_1	10	+	1613	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	3	51	multi-exon	FALSE	canonical	0	0	1327	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	31	1509	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6454_CONTIG_1	4	-	1191	3	full-splice_match	CXCL2	ENST00000296031	577	3	0	-614	multi-exon	FALSE	canonical	0	0	397	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6601_CONTIG_1	4	+	1586	8	full-splice_match	FGB	ENST00000302068	1975	8	55	334	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7475_CONTIG_1	1	-	209	2	genic	APOA2	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	175	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.952	0.048	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4083_CONTIG_1	4	+	353	2	incomplete-splice_match	ALB	ENST00000415165	1483	11	754	376	internal_fragment	FALSE	canonical	0	0	139	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3202_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	51	170	multi-exon	FALSE	canonical	0	0	1891	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	45	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5056_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6017_CONTIG_1	5	-	1132	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	924	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	615	914	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8069_CONTIG_1	2	-	1115	3	full-splice_match	COX7A2L	ENST00000464443	895	3	107	-327	multi-exon	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5804_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	49	169	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	45	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_525_CONTIG_1	17	-	1122	8	full-splice_match	APOH	ENST00000205948	1176	8	16	38	multi-exon	FALSE	canonical	0	0	86	2	NA	1	0	FALSE	NA	NA	0	C	coding	345	1035	23	1057	55	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1472_CONTIG_1	9	-	1888	8	full-splice_match	PLIN2	ENST00000276914	1972	8	89	-5	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	92	1402	15	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6802_CONTIG_1	10	-	898	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	179	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4266_CONTIG_1	4	-	1435	9	full-splice_match	ADH1C	ENST00000515683	1740	9	281	24	multi-exon	FALSE	canonical	0	0	89	2	NA	1	0	FALSE	NA	NA	0	C	coding	166	498	699	1196	30	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6535_CONTIG_1	6	+	1030	6	full-splice_match	RNF5	ENST00000375094	1168	6	136	2	multi-exon	FALSE	canonical	0	0	467	2	NA	0	0	FALSE	NA	NA	0	C	coding	180	540	23	562	15	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5425_CONTIG_1	4	+	440	5	incomplete-splice_match	ALB	ENST00000505649	1509	11	121	948	internal_fragment	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	4	438	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2786_CONTIG_1	16	-	556	6	novel_not_in_catalog	PAM16	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	35	2	NA	1	0	FALSE	NA	NA	0	A	coding	145	435	107	541	5	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_728_CONTIG_1	17	-	1561	8	full-splice_match	VTN	ENST00000226218	2149	8	495	93	multi-exon	FALSE	canonical	0	0	188	2	NA	1	0	FALSE	NA	NA	0	C	coding	478	1434	125	1558	25	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3734_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	48	172	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2244_CONTIG_1	11	-	874	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	25	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4105_CONTIG_1	10	-	1828	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	70	25	multi-exon	FALSE	canonical	0	0	193	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7008_CONTIG_1	1	+	1898	14	full-splice_match	GPR89B	ENST00000314163	1934	14	27	9	multi-exon	FALSE	canonical	0	0	1278	2	NA	0	0	FALSE	NA	NA	0	A	coding	455	1365	118	1482	25	0.24	0.76	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4251_CONTIG_1	6	+	534	6	full-splice_match	RPS18	ENST00000439602	613	6	67	12	multi-exon	FALSE	canonical	0	0	426	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	44	499	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6406_CONTIG_1	9	-	1327	10	full-splice_match	AMBP	ENST00000265132	1434	10	107	0	multi-exon	FALSE	canonical	0	0	273	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	157	1212	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_852_CONTIG_1	16	+	1099	3	full-splice_match	HP	ENST00000566821	3024	3	1900	25	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1393_CONTIG_1	11	+	669	2	full-splice_match	IFITM2	ENST00000399817	659	2	-10	0	multi-exon	FALSE	canonical	0	0	286	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	41	436	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1054_CONTIG_1	4	+	1394	11	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	534	3prime_fragment	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	451	1353	42	1394	45	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7513_CONTIG_1	11	-	917	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	283	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1231_CONTIG_1	4	+	1439	12	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1304	2	NA	0	0	TRUE	NA	NA	0	C	coding	413	1239	40	1278	55	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_993_CONTIG_1	10	-	870	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	207	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2091_CONTIG_1	11	-	898	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	1	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3224_CONTIG_1	2	-	932	4	full-splice_match	MCFD2	ENST00000319466	4182	4	48	3202	multi-exon	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	A	coding	144	432	111	542	55	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8133_CONTIG_1	22	+	857	5	novel_not_in_catalog	IGLV1-40	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	405	2	NA	2	0	TRUE	NA	NA	0	A	coding	122	366	28	393	35	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6268_CONTIG_1	7	-	1252	5	novel_in_catalog	POLR2J4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	67	2	NA	1	0	FALSE	NA	NA	0	A	coding	73	219	295	513	20	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6236_CONTIG_1	7	+	796	8	novel_not_in_catalog	UBE2D4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	511	2	NA	0	0	TRUE	NA	NA	0	A	coding	158	474	72	545	55	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2249_CONTIG_1	4	+	1779	14	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	1705	2	NA	1	0	TRUE	NA	NA	0	C	coding	546	1638	42	1679	40	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7014_CONTIG_1	4	+	2017	15	full-splice_match	ALB	ENST00000295897	2263	15	50	196	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8617_CONTIG_1	11	-	1561	10	full-splice_match	HPX	ENST00000265983	1652	10	77	14	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_797_CONTIG_1	2	+	1285	8	novel_in_catalog	FAHD2A	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1145	2	NA	1	0	FALSE	NA	NA	0	B	coding	314	942	264	1205	20	0.656	0.344	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7028_CONTIG_1	9	-	1335	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	1067	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	65	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_74_CONTIG_1	4	+	1362	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1211	2	NA	1	0	TRUE	NA	NA	0	C	coding	318	954	409	1362	30	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1715_CONTIG_1	4	-	1858	5	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	43	2	NA	0	0	TRUE	NA	NA	0	C	coding	246	738	71	808	35	0.946	0.054	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8677_CONTIG_1	5	-	1999	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	57	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.358	0.642	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2259_CONTIG_1	19	-	1028	10	full-splice_match	COPE	ENST00000262812	1141	10	20	93	multi-exon	FALSE	canonical	0	0	155	2	NA	0	0	FALSE	NA	NA	0	A	coding	308	924	30	953	15	0.236	0.764	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7980_CONTIG_1	7	+	1766	3	full-splice_match	MRPS17	ENST00000285298	1843	3	77	0	multi-exon	FALSE	canonical	0	0	175	2	NA	2	0	FALSE	NA	NA	0	A	coding	109	327	116	442	15	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6859_CONTIG_1	12	-	230	2	full-splice_match	C1R	ENST00000602286	956	2	-2	728	multi-exon	FALSE	canonical	0	0	77	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_161_CONTIG_1	14	-	1001	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	456	multi-exon	FALSE	canonical	0	0	37	2	NA	1	0	FALSE	NA	NA	0	C	coding	320	960	42	1001	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3359_CONTIG_1	11	-	817	4	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	17	2	NA	0	0	TRUE	NA	NA	0	C	coding	240	720	38	757	10	0.932	0.068	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3984_CONTIG_1	12	-	1154	3	incomplete-splice_match	WBP11	ENST00000261167	2749	12	1499	96	5prime_fragment	FALSE	canonical	0	0	44	2	NA	1	0	FALSE	NA	NA	0	A	coding	195	585	74	658	45	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7224_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	48	164	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5220_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	50	171	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1307_CONTIG_1	4	+	1737	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	191	3prime_fragment	FALSE	canonical	0	0	1693	2	NA	1	0	FALSE	NA	NA	0	C	coding	565	1695	42	1736	35	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_861_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	14	2	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4714_CONTIG_1	9	-	1718	9	full-splice_match	C9orf78	ENST00000372447	1795	9	0	77	multi-exon	FALSE	canonical	0	0	137	2	NA	4	0	FALSE	NA	NA	0	C	coding	289	867	55	921	45	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1922_CONTIG_1	3	+	1569	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	3	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1325_CONTIG_1	1	-	857	5	full-splice_match	RGS16	ENST00000367558	2427	5	15	1555	multi-exon	FALSE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	135	740	100	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_241_CONTIG_1	5	-	985	4	full-splice_match	LECT2	ENST00000274507	1077	4	34	58	multi-exon	FALSE	canonical	0	0	213	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_335_CONTIG_1	15	+	942	4	full-splice_match	B2M	ENST00000558401	1715	4	36	737	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1144_CONTIG_1	21	+	1060	3	full-splice_match	CBR1	ENST00000290349	1293	3	36	197	multi-exon	FALSE	canonical	0	0	536	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	140	970	65	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_236_CONTIG_1	1	-	1839	9	full-splice_match	CRYZ	ENST00000340866	1888	9	12	37	multi-exon	FALSE	canonical	0	0	63	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3436_CONTIG_1	1	+	814	5	full-splice_match	PRDX6	ENST00000340385	1751	5	69	868	multi-exon	FALSE	canonical	0	0	609	2	NA	0	0	FALSE	NA	NA	0	A	coding	224	672	64	735	25	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7346_CONTIG_1	12	-	2501	6	novel_in_catalog	A2M	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	156	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	60	0.496	0.504	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6963_CONTIG_1	3	+	2283	17	full-splice_match	TF	ENST00000402696	2968	17	440	245	multi-exon	FALSE	canonical	0	0	2107	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	46	2139	55	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6771_CONTIG_1	19	+	1124	4	full-splice_match	APOE	ENST00000252486	1208	4	44	40	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_985_CONTIG_1	19	+	794	4	full-splice_match	GADD45B	ENST00000215631	1373	4	0	579	multi-exon	FALSE	canonical	0	0	601	2	NA	0	0	FALSE	NA	NA	0	C	coding	160	480	233	712	45	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8147_CONTIG_1	X	+	1595	5	genic_intron	novelGene_730	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	105	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6024_CONTIG_1	10	+	1305	9	incomplete-splice_match	DDX50	ENST00000373585	2538	15	1170	63	internal_fragment	FALSE	canonical	0	0	872	2	NA	1	0	FALSE	NA	NA	0	A	coding	333	999	150	1148	40	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_238_CONTIG_1	10	-	581	2	genic	STK32C	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	318	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2450_CONTIG_1	19	-	1084	12	incomplete-splice_match	C3	ENST00000245907	5263	41	3970	209	5prime_fragment	FALSE	canonical	0	0	92	2	NA	0	0	FALSE	NA	NA	0	B	coding	307	921	162	1082	10	0.746	0.254	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2461_CONTIG_1	19	-	1304	8	incomplete-splice_match	CYP2A6	ENST00000301141	1764	9	350	110	5prime_fragment	FALSE	canonical	0	0	14	2	NA	0	0	FALSE	NA	NA	0	C	coding	291	873	281	1153	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5397_CONTIG_1	16	+	1307	8	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	520	2	NA	0	0	TRUE	NA	NA	0	C	coding	377	1131	31	1161	25	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1277_CONTIG_1	22	-	1289	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	5	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	27	1235	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1883_CONTIG_1	4	+	1119	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	343	21	internal_fragment	FALSE	canonical	0	0	975	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	86	949	60	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7458_CONTIG_1	19	-	1461	8	novel_in_catalog	SLC27A5	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	264	2	NA	0	0	FALSE	NA	NA	0	C	coding	396	1188	90	1277	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2863_CONTIG_1	15	-	973	4	full-splice_match	MRPL46	ENST00000312475	1019	4	29	17	multi-exon	FALSE	canonical	0	0	241	2	NA	0	0	FALSE	NA	NA	0	C	coding	210	630	221	850	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2189_CONTIG_1	10	-	918	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	159	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7406_CONTIG_1	12	+	1181	2	incomplete-splice_match	C1S	ENST00000443875	2550	11	1322	47	internal_fragment	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	B	coding	204	612	235	846	20	0.554	0.446	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1740_CONTIG_1	7	-	1874	8	full-splice_match	HIBADH	ENST00000265395	1990	8	63	53	multi-exon	FALSE	canonical	0	0	235	2	NA	2	0	FALSE	NA	NA	0	C	coding	336	1008	145	1152	45	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2849_CONTIG_1	12	+	1039	4	full-splice_match	PEBP1	ENST00000261313	1697	4	234	424	multi-exon	FALSE	canonical	0	0	464	2	NA	1	0	FALSE	NA	NA	0	C	coding	187	561	119	679	65	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7830_CONTIG_1	19	+	2269	13	full-splice_match	NUCB1	ENST00000405315	2668	13	295	104	multi-exon	FALSE	canonical	0	0	1318	2	NA	1	0	FALSE	NA	NA	0	C	coding	461	1383	40	1422	25	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2909_CONTIG_1	1	-	1974	2	full-splice_match	CRP	ENST00000255030	2015	2	0	41	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	coding	224	672	105	776	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8630_CONTIG_1	14	-	1012	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	451	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_961_CONTIG_1	11	-	642	2	full-splice_match	IFITM3	ENST00000399808	808	2	153	13	multi-exon	FALSE	canonical	0	0	333	2	NA	0	0	FALSE	NA	NA	0	C	coding	133	399	85	483	5	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4639_CONTIG_1	4	-	1557	10	full-splice_match	FGG	ENST00000404648	1760	10	193	10	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1246_CONTIG_1	7	+	852	2	genic	CRCP	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	513	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.94	0.06	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6874_CONTIG_1	14	-	1381	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	23	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6197_CONTIG_1	16	-	636	5	full-splice_match	NDUFAB1	ENST00000007516	717	5	52	29	multi-exon	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	87	482	55	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6449_CONTIG_1	9	+	1038	7	novel_not_in_catalog	SECISBP2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	946	2	NA	0	0	FALSE	NA	NA	0	A	coding	324	972	67	1038	30	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2653_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	443	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	47	1018	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_314_CONTIG_1	3	-	1807	10	incomplete-splice_match	PBRM1	ENST00000423351	4385	26	844	1734	internal_fragment	FALSE	canonical	0	0	58	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2325_CONTIG_1	12	-	1829	9	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	109	2	NA	1	0	TRUE	NA	NA	0	C	coding	517	1551	66	1616	45	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6551_CONTIG_1	10	+	1626	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	41	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2625_CONTIG_1	2	-	218	3	incomplete-splice_match	FN1	ENST00000494446	676	4	251	207	5prime_fragment	FALSE	canonical	0	0	28	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.446	0.554	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7555_CONTIG_1	14	+	1075	10	incomplete-splice_match	AMN	ENST00000299155	1907	12	7	825	3prime_fragment	FALSE	canonical	0	0	1032	2	NA	0	0	FALSE	NA	NA	0	B	coding	349	1047	27	1073	15	0.668	0.332	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3558_CONTIG_1	10	+	1846	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	14	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_89_CONTIG_1	11	+	1627	10	novel_in_catalog	EI24	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	930	2	NA	3	0	FALSE	NA	NA	0	C	coding	299	897	72	968	45	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6023_CONTIG_1	4	+	1568	8	full-splice_match	FGB	ENST00000302068	1975	8	59	348	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_682_CONTIG_1	4	+	1994	15	full-splice_match	ALB	ENST00000295897	2263	15	48	221	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7278_CONTIG_1	11	-	361	3	full-splice_match	YIF1A	ENST00000494836	540	3	177	2	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	79	237	68	304	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8562_CONTIG_1	5	-	1607	8	full-splice_match	LMAN2	ENST00000303127	1800	8	191	2	multi-exon	FALSE	canonical	0	0	210	2	NA	0	0	FALSE	NA	NA	0	C	coding	356	1068	15	1082	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4654_CONTIG_1	3	+	704	6	full-splice_match	RPL14	ENST00000338970	855	6	50	101	multi-exon	FALSE	canonical	0	0	373	2	NA	1	0	FALSE	NA	NA	0	C	coding	215	645	20	664	35	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7736_CONTIG_1	1	-	1828	5	full-splice_match	AGT	ENST00000366667	2291	5	187	276	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	485	1455	29	1483	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1946_CONTIG_1	15	+	854	4	full-splice_match	B2M	ENST00000559907	499	4	46	-401	multi-exon	FALSE	canonical	0	0	355	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7788_CONTIG_1	4	+	2005	15	full-splice_match	ALB	ENST00000295897	2263	15	50	208	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2737_CONTIG_1	6	+	1998	9	full-splice_match	PPT2	ENST00000324816	2202	9	196	8	multi-exon	FALSE	canonical	0	0	1137	2	NA	0	0	FALSE	NA	NA	0	A	coding	302	906	373	1278	10	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5262_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4172_CONTIG_1	1	-	473	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	5	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4199_CONTIG_1	1	+	785	2	full-splice_match	APCS	ENST00000255040	926	2	1	140	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	50	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7944_CONTIG_1	14	-	1020	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	443	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	10	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1567_CONTIG_1	10	-	908	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	169	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3092_CONTIG_1	9	-	407	4	novel_not_in_catalog	STOML2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	54	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6398_CONTIG_1	12	-	942	7	full-splice_match	RPL6	ENST00000202773	947	7	38	-33	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	18	881	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5488_CONTIG_1	7	+	630	6	full-splice_match	CRCP	ENST00000395326	3009	6	254	2125	multi-exon	FALSE	canonical	0	0	401	2	NA	0	0	FALSE	NA	NA	0	C	coding	148	444	105	548	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6992_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	55	338	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2193_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_850_CONTIG_1	19	-	651	6	incomplete-splice_match	C3	ENST00000245907	5263	41	3582	1030	internal_fragment	FALSE	canonical	0	0	157	2	NA	0	0	FALSE	NA	NA	0	B	coding	200	600	52	651	40	0.56	0.44	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3100_CONTIG_1	18	+	2079	12	novel_not_in_catalog	CNDP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1563	2	NA	1	0	FALSE	NA	NA	0	A	coding	510	1530	98	1627	35	0.548	0.452	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1090_CONTIG_1	3	-	1561	13	full-splice_match	UQCRC1	ENST00000203407	1985	13	397	27	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	480	1440	21	1460	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8137_CONTIG_1	9	+	756	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	30	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1867_CONTIG_1	19	-	495	5	incomplete-splice_match	C3	ENST00000599899	1992	8	1456	41	5prime_fragment	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	B	coding	101	303	190	492	20	0.548	0.452	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8444_CONTIG_1	8	-	984	6	full-splice_match	HRSP12	ENST00000254878	1057	6	70	3	multi-exon	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7933_CONTIG_1	4	+	1794	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1129	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5280_CONTIG_1	14	-	1020	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	443	multi-exon	FALSE	canonical	0	0	43	2	NA	2	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	10	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1455_CONTIG_1	10	-	1261	8	full-splice_match	ECHS1	ENST00000368547	1617	8	335	21	multi-exon	FALSE	canonical	0	0	109	2	NA	1	0	FALSE	NA	NA	0	C	coding	290	870	22	891	35	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4053_CONTIG_1	2	+	538	6	full-splice_match	RPS27A	ENST00000272317	1071	6	286	247	multi-exon	FALSE	canonical	0	0	359	2	NA	0	0	FALSE	NA	NA	0	C	coding	156	468	39	506	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1945_CONTIG_1	16	+	725	7	full-splice_match	IL32	ENST00000440815	920	7	34	161	multi-exon	FALSE	canonical	0	0	324	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	124	687	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1466_CONTIG_1	11	-	1400	6	novel_in_catalog	INS-IGF2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	B	coding	176	528	600	1127	40	0.624	0.376	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2115_CONTIG_1	1	-	461	4	full-splice_match	APOA2	ENST00000367990	474	4	0	13	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3749_CONTIG_1	12	-	727	3	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	0	0	TRUE	NA	NA	0	C	coding	176	528	200	727	30	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5216_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	55	338	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_706_CONTIG_1	19	+	944	4	genic_intron	novelGene_355	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	861	2	NA	7	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.286	0.714	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2935_CONTIG_1	3	+	1557	12	novel_not_in_catalog	TF	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1432	2	NA	0	0	TRUE	NA	NA	0	C	coding	472	1416	49	1464	20	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2880_CONTIG_1	10	-	1717	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	0	206	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	coding	449	1347	219	1565	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7719_CONTIG_1	11	-	1605	12	full-splice_match	FADS3	ENST00000278829	1779	12	96	78	multi-exon	FALSE	canonical	0	0	270	2	NA	1	0	FALSE	NA	NA	0	A	coding	445	1335	58	1392	30	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4187_CONTIG_1	12	+	1365	4	full-splice_match	PEBP1	ENST00000261313	1697	4	303	29	multi-exon	FALSE	canonical	0	0	395	2	NA	2	0	FALSE	NA	NA	0	C	coding	187	561	50	610	60	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7647_CONTIG_1	10	+	367	4	full-splice_match	RPS24	ENST00000478655	727	4	0	360	multi-exon	FALSE	canonical	0	0	318	2	NA	0	0	FALSE	NA	NA	0	C	coding	109	327	40	366	60	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2024_CONTIG_1	9	-	1460	9	novel_not_in_catalog	ALDOB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	66	2	NA	0	0	TRUE	NA	NA	0	C	coding	331	993	77	1069	55	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7632_CONTIG_1	4	-	1072	5	full-splice_match	IGFBP7	ENST00000295666	1427	5	0	355	multi-exon	FALSE	canonical	0	0	509	2	NA	1	0	FALSE	NA	NA	0	A	coding	282	846	35	880	50	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7497_CONTIG_1	17	-	1136	7	incomplete-splice_match	VTN	ENST00000536498	2046	10	46	864	internal_fragment	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	C	coding	344	1032	104	1135	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2985_CONTIG_1	8	+	1269	2	novel_not_in_catalog	LAPTM4B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3613_CONTIG_1	6	+	519	6	full-splice_match	RPS18	ENST00000439602	613	6	67	27	multi-exon	TRUE	canonical	0	0	426	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	44	499	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2370_CONTIG_1	1	-	1856	8	novel_in_catalog	B4GALT3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	72	2	NA	0	0	FALSE	NA	NA	0	C	coding	393	1179	254	1432	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8496_CONTIG_1	8	-	1639	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1092	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6672_CONTIG_1	9	+	757	6	full-splice_match	ORM1	ENST00000259396	802	6	42	3	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3657_CONTIG_1	4	+	1992	15	full-splice_match	ALB	ENST00000295897	2263	15	48	223	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1971_CONTIG_1	11	-	806	4	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	18	2	NA	0	0	TRUE	NA	NA	0	C	coding	240	720	39	758	30	0.934	0.066	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_501_CONTIG_1	22	+	2202	5	full-splice_match	SERPIND1	ENST00000215727	2437	5	234	1	multi-exon	FALSE	canonical	0	0	1357	2	NA	1	0	FALSE	NA	NA	0	C	coding	499	1497	50	1546	25	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7239_CONTIG_1	19	+	1345	5	full-splice_match	KXD1	ENST00000222307	1426	5	58	23	multi-exon	FALSE	canonical	0	0	391	2	NA	0	0	FALSE	NA	NA	0	A	coding	176	528	91	618	50	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1846_CONTIG_1	22	+	532	5	full-splice_match	POLR2F	ENST00000442738	2106	5	33	1541	multi-exon	FALSE	canonical	0	0	385	2	NA	0	0	FALSE	NA	NA	0	A	coding	127	381	93	473	50	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3863_CONTIG_1	4	+	936	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	463	84	internal_fragment	FALSE	canonical	0	0	855	2	NA	2	0	FALSE	NA	NA	0	C	coding	257	771	59	829	50	0.286	0.714	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6823_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	50	202	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3815_CONTIG_1	6	-	705	5	full-splice_match	DYNLT1	ENST00000367089	726	5	17	4	multi-exon	FALSE	canonical	0	0	41	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2449_CONTIG_1	12	+	2256	10	incomplete-splice_match	C1S	ENST00000360817	2635	12	426	-47	internal_fragment	FALSE	canonical	0	0	1120	2	NA	1	0	FALSE	NA	NA	0	B	coding	521	1563	352	1914	25	0.696	0.304	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1642_CONTIG_1	19	-	1869	16	novel_not_in_catalog	SARS2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	275	2	NA	2	0	FALSE	NA	NA	0	A	coding	507	1521	9	1529	20	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3528_CONTIG_1	18	-	876	2	incomplete-splice_match	CYB5A	ENST00000583418	5913	4	5038	-1	5prime_fragment	FALSE	canonical	0	0	506	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4772_CONTIG_1	7	-	1021	7	novel_not_in_catalog	TMEM176B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	15	2	NA	0	0	FALSE	NA	NA	0	C	coding	270	810	17	826	45	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7202_CONTIG_1	7	+	896	5	full-splice_match	AP1S1	ENST00000337619	1306	5	101	309	multi-exon	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	C	coding	158	474	18	491	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_135_CONTIG_1	19	+	660	8	full-splice_match	RPL13A	ENST00000391857	1181	8	54	467	multi-exon	FALSE	canonical	0	0	547	2	NA	0	0	FALSE	NA	NA	0	C	coding	203	609	23	631	0	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7625_CONTIG_1	4	+	1575	8	full-splice_match	FGB	ENST00000302068	1975	8	24	376	multi-exon	FALSE	canonical	0	0	1283	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	40	1512	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6460_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	59	334	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_524_CONTIG_1	1	-	789	5	full-splice_match	MPC2	ENST00000367846	2177	5	45	1343	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	155	535	10	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5168_CONTIG_1	9	+	1346	7	full-splice_match	ANP32B	ENST00000339399	1463	7	-21	138	multi-exon	FALSE	canonical	0	0	904	2	NA	1	0	FALSE	NA	NA	0	A	coding	251	753	217	969	10	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2117_CONTIG_1	14	+	925	11	full-splice_match	PSME1	ENST00000206451	1006	11	45	36	multi-exon	FALSE	canonical	0	0	729	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	61	807	45	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7024_CONTIG_1	5	-	765	4	genic_intron	novelGene_572	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	48	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1343_CONTIG_1	1	-	2266	7	incomplete-splice_match	PDE4DIP	ENST00000313431	5676	19	318	3092	internal_fragment	FALSE	canonical	0	0	1464	2	NA	0	0	FALSE	NA	NA	0	A	coding	642	1926	340	2265	40	0.298	0.702	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7633_CONTIG_1	19	+	614	6	incomplete-splice_match	TOMM40	ENST00000252487	1707	10	63	1030	3prime_fragment	FALSE	canonical	0	0	575	2	NA	0	0	FALSE	NA	NA	0	A	coding	192	576	39	614	15	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8599_CONTIG_1	16	+	1201	4	full-splice_match	HPR	ENST00000228226	1158	4	116	-159	multi-exon	FALSE	canonical	0	0	263	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	356	1039	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8230_CONTIG_1	9	+	775	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	607	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	68	670	25	0.596	0.404	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2520_CONTIG_1	9	-	436	2	full-splice_match	TOMM5	ENST00000377773	808	2	20	352	multi-exon	FALSE	canonical	0	0	268	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6683_CONTIG_1	12	-	1096	7	full-splice_match	C1R	ENST00000542220	1257	7	162	-1	multi-exon	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	coding	346	1038	58	1095	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4339_CONTIG_1	14	+	1576	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	-1	multi-exon	FALSE	canonical	0	0	1133	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6996_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_888_CONTIG_1	19	-	1961	15	novel_not_in_catalog	XAB2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	106	2	NA	0	0	FALSE	NA	NA	0	A	coding	550	1650	305	1954	5	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_843_CONTIG_1	12	-	499	4	incomplete-splice_match	DCN	ENST00000552962	1930	9	754	677	internal_fragment	FALSE	canonical	0	0	98	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4147_CONTIG_1	2	-	807	5	novel_in_catalog	CD302	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	99	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1171_CONTIG_1	8	-	491	5	full-splice_match	RPL30	ENST00000287038	543	5	45	7	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	115	345	71	415	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2604_CONTIG_1	7	-	1802	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	7	multi-exon	FALSE	canonical	0	0	78	2	NA	2	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	40	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6173_CONTIG_1	4	+	1172	10	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1115	2	NA	0	0	TRUE	NA	NA	0	C	coding	260	780	40	819	15	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4112_CONTIG_1	21	+	847	7	novel_not_in_catalog	SOD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	826	2	NA	1	0	TRUE	NA	NA	0	C	coding	154	462	76	537	50	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3851_CONTIG_1	11	-	1043	4	full-splice_match	CFL1	ENST00000308162	1234	4	121	70	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	114	611	0	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7839_CONTIG_1	17	+	1775	15	novel_not_in_catalog	RPS6KB1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	1375	2	NA	0	0	FALSE	NA	NA	0	A	coding	127	381	46	426	60	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1315_CONTIG_1	1	-	473	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	5	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4720_CONTIG_1	11	-	738	3	novel_in_catalog	APOA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	18	2	NA	2	0	FALSE	NA	NA	0	C	coding	158	474	209	682	15	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1571_CONTIG_1	12	-	664	3	incomplete-splice_match	CALCOCO1	ENST00000550804	2291	15	1657	-30	5prime_fragment	FALSE	canonical	0	0	195	2	NA	1	0	FALSE	NA	NA	0	A	coding	145	435	43	477	10	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4757_CONTIG_1	7	-	1131	2	full-splice_match	MPLKIP	ENST00000306984	7668	2	-186	6723	multi-exon	FALSE	canonical	0	0	617	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4249_CONTIG_1	12	+	1092	3	full-splice_match	ERP29	ENST00000261735	1735	3	134	509	multi-exon	FALSE	canonical	0	0	299	2	NA	0	0	FALSE	NA	NA	0	C	coding	261	783	17	799	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2512_CONTIG_1	11	+	969	3	novel_in_catalog	NNMT	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	503	2	NA	0	0	FALSE	NA	NA	0	C	coding	121	363	106	468	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5137_CONTIG_1	12	-	878	7	full-splice_match	RPL6	ENST00000202773	947	7	36	33	multi-exon	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	coding	286	858	20	877	35	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_439_CONTIG_1	3	+	1578	11	full-splice_match	KNG1	ENST00000287611	1720	11	55	87	multi-exon	FALSE	canonical	0	0	1415	2	NA	1	0	FALSE	NA	NA	0	C	coding	427	1281	213	1493	45	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7499_CONTIG_1	7	-	915	3	incomplete-splice_match	ACTB	ENST00000425660	1845	7	848	82	5prime_fragment	FALSE	canonical	0	0	79	2	NA	1	0	FALSE	NA	NA	0	C	coding	107	321	82	402	5	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5914_CONTIG_1	1	+	1146	4	incomplete-splice_match	CFH	ENST00000466229	6985	16	5815	24	internal_fragment	FALSE	canonical	0	0	776	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.528	0.472	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7743_CONTIG_1	9	+	746	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	25	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5981_CONTIG_1	19	-	1267	2	full-splice_match	LRG1	ENST00000306390	3036	2	439	1330	multi-exon	FALSE	canonical	0	0	54	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	23	1063	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1182_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	48	169	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3666_CONTIG_1	15	+	1612	8	incomplete-splice_match	SORD	ENST00000558580	1395	9	109	-326	internal_fragment	FALSE	canonical	0	0	842	2	NA	1	0	FALSE	NA	NA	0	C	coding	319	957	49	1005	30	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1996_CONTIG_1	4	+	862	6	full-splice_match	RPS3A	ENST00000274065	934	6	54	18	multi-exon	FALSE	canonical	0	0	699	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1931_CONTIG_1	9	+	757	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	573	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	34	636	20	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7843_CONTIG_1	6	-	2332	4	novel_not_in_catalog	SOD2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	93	2	NA	1	0	TRUE	NA	NA	0	C	coding	155	465	1862	2326	25	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5966_CONTIG_1	4	+	1685	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	203	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2803_CONTIG_1	7	+	1722	3	genic	CHPF2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	842	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2984_CONTIG_1	19	-	760	5	full-splice_match	RABAC1	ENST00000222008	821	5	43	18	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	185	555	56	610	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5810_CONTIG_1	4	+	1968	15	full-splice_match	ALB	ENST00000295897	2263	15	50	245	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7970_CONTIG_1	11	-	654	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	245	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	205	615	39	653	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2871_CONTIG_1	2	+	2518	10	novel_not_in_catalog	MEIS1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1393	2	NA	2	0	FALSE	NA	NA	0	A	coding	121	363	815	1177	10	0.368	0.632	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1433_CONTIG_1	4	-	1456	10	full-splice_match	FGG	ENST00000404648	1760	10	196	108	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	45	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1285_CONTIG_1	10	+	1567	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	100	multi-exon	FALSE	canonical	0	0	1330	2	NA	1	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	25	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7867_CONTIG_1	4	-	1549	10	full-splice_match	FGG	ENST00000404648	1760	10	193	18	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6391_CONTIG_1	X	+	593	6	full-splice_match	SSR4	ENST00000370086	643	6	2	48	multi-exon	FALSE	canonical	0	0	464	2	NA	0	0	FALSE	NA	NA	0	A	coding	170	510	57	566	35	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_987_CONTIG_1	14	-	1013	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	444	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7194_CONTIG_1	4	+	1768	13	full-splice_match	LAP3	ENST00000606142	1876	13	10	98	multi-exon	FALSE	canonical	0	0	1331	2	NA	0	0	FALSE	NA	NA	0	A	coding	488	1464	55	1518	30	0.226	0.774	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2773_CONTIG_1	17	+	1773	6	full-splice_match	PCTP	ENST00000268896	2044	6	78	193	multi-exon	FALSE	canonical	0	0	626	2	NA	1	0	FALSE	NA	NA	0	A	coding	214	642	48	689	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3957_CONTIG_1	16	+	1235	5	full-splice_match	HP	ENST00000398131	1252	5	17	0	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8060_CONTIG_1	1	-	475	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	3	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7607_CONTIG_1	4	-	1454	9	full-splice_match	ADH1A	ENST00000209668	1499	9	45	0	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	70	1194	10	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3023_CONTIG_1	17	+	876	2	full-splice_match	UBB	ENST00000302182	1225	2	296	53	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	229	687	97	783	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7391_CONTIG_1	11	+	500	4	full-splice_match	SAA1	ENST00000356524	615	4	90	25	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8367_CONTIG_1	1	+	2141	11	novel_not_in_catalog	PGM1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1530	2	NA	1	0	TRUE	NA	NA	0	A	coding	512	1536	82	1617	30	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6833_CONTIG_1	14	-	1001	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	456	multi-exon	FALSE	canonical	0	0	37	2	NA	1	0	FALSE	NA	NA	0	C	coding	320	960	42	1001	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5435_CONTIG_1	17	-	1112	9	novel_not_in_catalog	POLDIP2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	234	2	NA	4	0	TRUE	NA	NA	0	A	coding	63	189	821	1009	10	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7973_CONTIG_1	7	-	1141	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	40	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	21	905	50	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8274_CONTIG_1	17	+	437	3	incomplete-splice_match	SLC9A3R1	ENST00000262613	1969	6	387	1145	3prime_fragment	FALSE	canonical	0	0	411	2	NA	0	0	FALSE	NA	NA	0	C	coding	53	159	277	435	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_353_CONTIG_1	17	-	1675	14	full-splice_match	PCYT2	ENST00000538721	1765	14	4	86	multi-exon	FALSE	canonical	0	0	136	2	NA	0	0	FALSE	NA	NA	0	A	coding	407	1221	48	1268	20	0.172	0.828	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6895_CONTIG_1	10	-	909	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	168	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3155_CONTIG_1	5	-	604	4	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	187	1452	internal_fragment	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1932_CONTIG_1	3	+	1215	6	full-splice_match	CHMP2B	ENST00000263780	2606	6	27	1364	multi-exon	FALSE	canonical	0	0	742	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8121_CONTIG_1	22	-	1293	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	1	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	27	1235	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7093_CONTIG_1	4	+	1152	9	incomplete-splice_match	ALB	ENST00000511370	1519	11	132	235	internal_fragment	FALSE	canonical	0	0	1053	2	NA	1	0	FALSE	NA	NA	0	C	coding	262	786	365	1150	30	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3086_CONTIG_1	16	+	1299	11	incomplete-splice_match	CES2	ENST00000568470	3391	12	1697	395	internal_fragment	FALSE	canonical	0	0	1226	2	NA	0	0	FALSE	NA	NA	0	C	coding	429	1287	13	1299	5	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_48_CONTIG_1	5	-	934	3	incomplete-splice_match	TNIP1	ENST00000522574	1394	6	993	-533	5prime_fragment	FALSE	canonical	0	0	40	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4867_CONTIG_1	3	-	1795	14	incomplete-splice_match	ALDH1L1	ENST00000452905	2758	21	964	-1	5prime_fragment	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	A	coding	523	1569	5	1573	15	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5681_CONTIG_1	16	+	1231	5	full-splice_match	HP	ENST00000398131	1252	5	17	4	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4046_CONTIG_1	11	-	760	4	full-splice_match	HPX	ENST00000527556	1126	4	584	-218	multi-exon	FALSE	canonical	0	0	79	2	NA	0	0	FALSE	NA	NA	0	C	coding	208	624	7	630	45	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2397_CONTIG_1	17	-	1898	6	full-splice_match	ACTG1	ENST00000331925	1994	6	72	24	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	76	1200	45	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1257_CONTIG_1	4	+	1675	14	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1521	2	NA	0	0	TRUE	NA	NA	0	C	coding	286	858	42	899	45	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3492_CONTIG_1	1	-	1587	9	full-splice_match	HMGCL	ENST00000374490	1600	9	21	-8	multi-exon	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	24	998	5	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4887_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	57	336	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3834_CONTIG_1	18	+	785	8	full-splice_match	NDUFV2	ENST00000318388	930	8	101	44	multi-exon	FALSE	canonical	0	0	669	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	14	760	55	0.24	0.76	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6336_CONTIG_1	19	+	851	4	full-splice_match	FTL	ENST00000331825	878	4	26	1	multi-exon	FALSE	canonical	0	0	556	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	182	706	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6911_CONTIG_1	11	-	485	5	full-splice_match	FAU	ENST00000529639	847	5	354	8	multi-exon	FALSE	canonical	0	0	30	2	NA	1	0	FALSE	NA	NA	0	C	coding	133	399	39	437	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8246_CONTIG_1	10	-	824	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	253	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7514_CONTIG_1	11	-	911	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	289	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5674_CONTIG_1	4	-	2135	9	full-splice_match	ADH4	ENST00000265512	1993	9	0	-142	multi-exon	FALSE	canonical	0	0	93	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4478_CONTIG_1	4	+	1423	11	full-splice_match	ALB	ENST00000511370	1519	11	44	52	multi-exon	FALSE	canonical	0	0	1342	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	453	1316	50	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3430_CONTIG_1	18	-	1568	10	full-splice_match	ACAA2	ENST00000285093	2018	10	439	11	multi-exon	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	38	1228	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2725_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	446	multi-exon	FALSE	canonical	0	0	42	2	NA	1	0	FALSE	NA	NA	0	C	coding	323	969	47	1015	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5370_CONTIG_1	12	-	975	6	full-splice_match	ARL1	ENST00000261636	3241	6	61	2205	multi-exon	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7593_CONTIG_1	2	+	1032	2	novel_in_catalog	UGT1A3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	898	2	NA	0	0	FALSE	NA	NA	0	B	coding	333	999	32	1030	40	0.576	0.424	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2101_CONTIG_1	16	+	935	8	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	627	2	NA	0	0	TRUE	NA	NA	0	C	coding	227	681	28	708	45	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_514_CONTIG_1	10	+	2155	15	novel_not_in_catalog	ITIH2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1872	2	NA	2	1	FALSE	NA	NA	0	B	coding	629	1887	131	2017	35	0.88	0.12	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5307_CONTIG_1	1	-	1091	4	incomplete-splice_match	AGT	ENST00000366667	2291	5	962	238	5prime_fragment	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	231	693	16	708	50	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2651_CONTIG_1	4	-	529	4	incomplete-splice_match	FGG	ENST00000336098	1659	9	498	632	internal_fragment	FALSE	canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	C	coding	40	120	409	528	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_316_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	443	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	47	1018	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4559_CONTIG_1	10	+	521	6	full-splice_match	RPS24	ENST00000360830	514	6	-20	13	multi-exon	FALSE	canonical	0	0	451	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	40	429	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_256_CONTIG_1	1	-	1822	15	incomplete-splice_match	ARID4B	ENST00000491632	3823	20	-25	2026	internal_fragment	FALSE	canonical	0	0	425	2	NA	0	0	FALSE	NA	NA	0	A	coding	449	1347	475	1821	45	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6165_CONTIG_1	11	-	724	5	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	54	2	NA	0	0	TRUE	NA	NA	0	C	coding	212	636	75	710	0	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6915_CONTIG_1	2	-	1829	7	incomplete-splice_match	IDH1	ENST00000446179	2298	10	403	66	5prime_fragment	FALSE	canonical	0	0	217	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.578	0.422	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2959_CONTIG_1	3	+	2288	17	full-splice_match	TF	ENST00000402696	2968	17	437	243	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3990_CONTIG_1	10	+	938	7	incomplete-splice_match	CYP2E1	ENST00000421586	1068	8	152	-22	internal_fragment	FALSE	canonical	0	0	884	2	NA	0	0	FALSE	NA	NA	0	C	coding	251	753	185	937	15	0.13	0.87	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6894_CONTIG_1	5	-	1615	6	novel_not_in_catalog	PLK2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	397	2	NA	0	0	FALSE	NA	NA	0	A	coding	199	597	422	1018	30	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3426_CONTIG_1	2	-	1599	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	587	multi-exon	FALSE	canonical	0	0	164	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	45	581	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_532_CONTIG_1	4	+	1556	8	full-splice_match	FGB	ENST00000302068	1975	8	55	364	multi-exon	FALSE	canonical	0	0	1252	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7590_CONTIG_1	4	+	1522	12	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	404	3prime_fragment	FALSE	canonical	0	0	1467	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	40	1521	35	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3673_CONTIG_1	1	+	917	2	full-splice_match	APCS	ENST00000255040	926	2	1	8	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3269_CONTIG_1	19	+	2100	2	genic	TPM3P6	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1368	2	NA	18	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.358	0.642	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2690_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4925_CONTIG_1	11	-	897	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	2	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1249_CONTIG_1	6	-	804	4	incomplete-splice_match	VNN1	ENST00000367928	3106	7	-3	2305	internal_fragment	FALSE	canonical	0	0	227	2	NA	1	0	FALSE	NA	NA	0	B	coding	262	786	18	803	35	0.43	0.57	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8670_CONTIG_1	18	-	1557	10	full-splice_match	ACAA2	ENST00000285093	2018	10	439	22	multi-exon	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	38	1228	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3011_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	48	169	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3601_CONTIG_1	15	+	1379	2	genic_intron	novelGene_469	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	55	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.204	0.796	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6230_CONTIG_1	4	+	514	4	full-splice_match	ALB	ENST00000515133	665	4	2	149	multi-exon	FALSE	canonical	0	0	309	2	NA	0	0	FALSE	NA	NA	0	C	coding	158	474	40	513	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4865_CONTIG_1	15	-	830	5	full-splice_match	FAM96A	ENST00000300030	1105	5	236	39	multi-exon	FALSE	canonical	0	0	138	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1759_CONTIG_1	16	+	1109	5	novel_in_catalog	HP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	307	921	28	948	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1330_CONTIG_1	16	+	1167	4	incomplete-splice_match	HP	ENST00000398131	1252	5	81	4	internal_fragment	FALSE	canonical	0	0	228	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	321	1004	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3048_CONTIG_1	11	+	2083	8	incomplete-splice_match	APLP2	ENST00000263574	3720	18	1623	14	internal_fragment	FALSE	canonical	0	0	639	2	NA	0	0	FALSE	NA	NA	0	B	coding	239	717	22	738	30	0.682	0.318	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4411_CONTIG_1	4	+	2016	15	full-splice_match	ALB	ENST00000295897	2263	15	48	199	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	10	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8011_CONTIG_1	4	-	1690	13	full-splice_match	GC	ENST00000273951	1972	13	273	9	multi-exon	FALSE	canonical	0	0	129	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	72	1493	50	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4565_CONTIG_1	9	-	996	5	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	616	839	5prime_fragment	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	206	601	60	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2821_CONTIG_1	19	-	946	5	full-splice_match	SMIM7	ENST00000487416	2776	5	13	1817	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4940_CONTIG_1	1	-	1129	3	novel_not_in_catalog	GBP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	49	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1432_CONTIG_1	1	-	1920	2	full-splice_match	CRP	ENST00000255030	2015	2	0	95	multi-exon	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	coding	224	672	105	776	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4964_CONTIG_1	19	-	986	6	full-splice_match	C19orf10	ENST00000262947	1018	6	28	4	multi-exon	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	C	coding	173	519	9	527	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8064_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	23	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_304_CONTIG_1	16	+	1177	5	full-splice_match	HP	ENST00000398131	1252	5	17	58	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4242_CONTIG_1	6	-	1718	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	29	multi-exon	FALSE	canonical	0	0	33	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	50	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_772_CONTIG_1	19	+	727	6	full-splice_match	SEPW1	ENST00000601048	888	6	99	62	multi-exon	FALSE	canonical	0	0	397	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7766_CONTIG_1	1	+	748	7	novel_not_in_catalog	UFC1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	495	2	NA	1	1	TRUE	NA	NA	0	A	coding	196	588	9	596	20	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_388_CONTIG_1	8	+	801	2	novel_not_in_catalog	ERLIN2	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	266	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5648_CONTIG_1	11	-	1698	4	full-splice_match	CD59	ENST00000395850	1889	4	16	175	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	61	444	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2835_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4399_CONTIG_1	19	+	1005	3	novel_in_catalog	FTL	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	C	coding	159	477	198	674	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3678_CONTIG_1	1	+	2177	12	novel_not_in_catalog	C4BPA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1772	2	NA	0	0	FALSE	NA	NA	0	C	coding	581	1743	201	1943	60	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3968_CONTIG_1	1	+	1813	5	novel_in_catalog	IFI16	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	804	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4972_CONTIG_1	22	+	987	7	incomplete-splice_match	LIMK2	ENST00000406516	2657	15	1257	413	internal_fragment	FALSE	canonical	0	0	550	2	NA	0	0	FALSE	NA	NA	0	A	coding	288	864	36	899	10	0.258	0.742	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7486_CONTIG_1	6	+	1074	6	full-splice_match	GNMT	ENST00000372808	1072	6	-4	2	multi-exon	FALSE	canonical	0	0	730	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	15	899	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2854_CONTIG_1	4	+	1561	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	497	205	internal_fragment	FALSE	canonical	0	0	1445	2	NA	1	0	FALSE	NA	NA	0	C	coding	463	1389	31	1419	0	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1098_CONTIG_1	X	-	351	3	full-splice_match	RPL39	ENST00000361575	401	3	14	36	multi-exon	FALSE	canonical	0	0	56	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6808_CONTIG_1	9	+	761	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	20	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2717_CONTIG_1	9	+	1075	2	genic	EEF1A1P5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	450	2	NA	0	0	TRUE	NA	NA	0	B	coding	129	387	65	451	80	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2751_CONTIG_1	12	-	404	4	full-splice_match	RPLP0	ENST00000546564	844	4	31	409	multi-exon	FALSE	canonical	0	0	104	2	NA	0	0	FALSE	NA	NA	0	C	coding	118	354	51	404	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3580_CONTIG_1	4	-	1776	6	full-splice_match	UGT2B4	ENST00000305107	2103	6	0	327	multi-exon	FALSE	canonical	0	0	768	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3162_CONTIG_1	11	-	1319	3	full-splice_match	APOA5	ENST00000227665	1897	3	24	554	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	coding	363	1089	21	1109	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1385_CONTIG_1	4	+	1614	8	full-splice_match	FGB	ENST00000302068	1975	8	55	306	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7063_CONTIG_1	4	+	741	6	incomplete-splice_match	ALB	ENST00000415165	1483	11	672	70	internal_fragment	FALSE	canonical	0	0	646	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	201	620	40	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_205_CONTIG_1	15	+	695	6	incomplete-splice_match	TUBGCP4	ENST00000260383	2617	18	1630	292	internal_fragment	FALSE	canonical	0	0	615	2	NA	0	0	FALSE	NA	NA	0	A	coding	168	504	122	625	35	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_936_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1391_CONTIG_1	X	+	602	3	full-splice_match	TMSB4X	ENST00000451311	628	3	2	24	multi-exon	FALSE	canonical	0	0	175	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8004_CONTIG_1	10	-	1215	8	novel_not_in_catalog	OGDHL	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	117	2	NA	1	0	TRUE	NA	NA	0	A	coding	241	723	106	828	20	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7727_CONTIG_1	11	+	1665	2	full-splice_match	FADD	ENST00000301838	1841	2	133	43	multi-exon	FALSE	canonical	0	0	450	2	NA	1	0	FALSE	NA	NA	0	A	coding	208	624	165	788	40	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7055_CONTIG_1	6	-	918	6	novel_not_in_catalog	HLA-C	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	54	2	NA	2	0	TRUE	NA	NA	0	C	coding	82	246	266	511	30	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_664_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	48	173	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8501_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4731_CONTIG_1	9	+	758	6	full-splice_match	ORM1	ENST00000259396	802	6	42	2	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4132_CONTIG_1	4	+	1929	15	full-splice_match	ALB	ENST00000295897	2263	15	50	284	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7107_CONTIG_1	3	+	2254	17	full-splice_match	TF	ENST00000402696	2968	17	439	275	multi-exon	FALSE	canonical	0	0	2108	2	NA	1	0	FALSE	NA	NA	0	C	coding	698	2094	47	2140	10	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_141_CONTIG_1	4	+	1575	8	full-splice_match	FGB	ENST00000302068	1975	8	63	337	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	1	1473	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2419_CONTIG_1	9	-	588	6	incomplete-splice_match	KIAA0020	ENST00000397885	2321	18	177	1556	internal_fragment	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6605_CONTIG_1	22	+	1088	2	incomplete-splice_match	PPARA	ENST00000434345	1204	5	914	-798	internal_fragment	FALSE	canonical	0	0	42	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.454	0.546	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7340_CONTIG_1	12	+	1949	13	full-splice_match	ALDH2	ENST00000261733	2018	13	40	29	multi-exon	FALSE	canonical	0	0	1542	2	NA	0	0	FALSE	NA	NA	0	C	coding	517	1551	22	1572	50	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4393_CONTIG_1	16	+	1200	5	full-splice_match	HP	ENST00000565574	1187	5	-3	-10	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6828_CONTIG_1	18	+	598	4	full-splice_match	TTR	ENST00000237014	957	4	151	208	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7084_CONTIG_1	9	+	1046	4	full-splice_match	GADD45G	ENST00000252506	1065	4	-5	24	multi-exon	FALSE	canonical	0	0	483	2	NA	0	0	FALSE	NA	NA	0	A	coding	159	477	115	591	45	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6790_CONTIG_1	14	-	794	11	full-splice_match	PSME2	ENST00000216802	1404	11	608	2	multi-exon	FALSE	canonical	0	0	80	2	NA	0	0	FALSE	NA	NA	0	A	coding	239	717	33	749	5	0.344	0.656	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7400_CONTIG_1	19	+	453	3	novel_in_catalog	APOC1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	288	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6500_CONTIG_1	9	-	1252	10	full-splice_match	AMBP	ENST00000265132	1434	10	177	5	multi-exon	FALSE	canonical	0	0	203	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	87	1142	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6239_CONTIG_1	22	-	1267	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	27	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	403	1209	27	1235	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1681_CONTIG_1	10	+	1495	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	172	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	487	1461	34	1494	15	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2700_CONTIG_1	19	-	741	3	incomplete-splice_match	EEF2	ENST00000309311	3164	15	2168	255	5prime_fragment	FALSE	canonical	0	0	171	2	NA	0	0	FALSE	NA	NA	0	B	coding	162	486	10	495	15	0.51	0.49	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7653_CONTIG_1	16	+	1018	7	novel_not_in_catalog	RPL13	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	461	2	NA	1	0	TRUE	NA	NA	0	C	coding	121	363	52	414	15	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5634_CONTIG_1	4	-	2131	5	full-splice_match	FGA	ENST00000403106	2248	5	24	93	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	56	1987	10	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3694_CONTIG_1	3	+	1709	3	genic	EIF4A2	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	1689	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_875_CONTIG_1	4	-	2199	5	full-splice_match	FGA	ENST00000403106	2248	5	24	25	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	56	1987	35	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3593_CONTIG_1	19	+	1204	8	novel_not_in_catalog	APOE	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1182	2	NA	0	0	TRUE	NA	NA	0	C	coding	317	951	68	1018	35	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4344_CONTIG_1	20	-	471	3	incomplete-splice_match	MKKS	ENST00000347364	6714	6	78	6165	internal_fragment	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2754_CONTIG_1	9	-	1414	10	full-splice_match	AMBP	ENST00000265132	1434	10	16	4	multi-exon	FALSE	canonical	0	0	364	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	248	1303	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8357_CONTIG_1	10	-	1262	8	full-splice_match	ECHS1	ENST00000368547	1617	8	335	20	multi-exon	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	C	coding	290	870	22	891	35	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5535_CONTIG_1	10	-	600	2	genic_intron	novelGene_619	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	573	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6125_CONTIG_1	19	+	1059	4	full-splice_match	APOE	ENST00000252486	1208	4	50	99	multi-exon	FALSE	canonical	0	0	297	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	62	1012	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6361_CONTIG_1	2	+	549	7	incomplete-splice_match	UBXN4	ENST00000272638	4006	13	454	3003	internal_fragment	FALSE	canonical	0	0	514	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.566	0.434	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_349_CONTIG_1	4	-	1432	2	incomplete-splice_match	HSD17B13	ENST00000302219	2269	6	725	112	5prime_fragment	FALSE	canonical	0	0	24	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2554_CONTIG_1	15	-	1364	8	novel_not_in_catalog	POLG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	28	2	NA	0	0	TRUE	NA	NA	0	A	coding	239	717	234	950	80	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6266_CONTIG_1	4	+	1782	7	novel_not_in_catalog	UGT2B7	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1416	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1010_CONTIG_1	3	-	1297	9	novel_in_catalog	ACAA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	246	2	NA	0	0	FALSE	NA	NA	0	B	coding	278	834	76	909	15	0.64	0.36	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6785_CONTIG_1	3	+	2161	16	incomplete-splice_match	TF	ENST00000402696	2968	17	583	224	internal_fragment	FALSE	canonical	0	0	1964	2	NA	0	0	FALSE	NA	NA	0	C	coding	654	1962	35	1996	40	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7690_CONTIG_1	4	-	2203	5	full-splice_match	FGA	ENST00000403106	2248	5	22	23	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	35	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8190_CONTIG_1	4	+	2200	12	novel_not_in_catalog	MAEA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	2177	2	NA	1	0	TRUE	NA	NA	0	A	coding	396	1188	26	1213	25	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5032_CONTIG_1	10	+	1665	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	2	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3271_CONTIG_1	10	+	1987	8	novel_in_catalog	CYP2E1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1719	2	NA	0	0	FALSE	NA	NA	0	C	coding	294	882	1020	1901	20	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8338_CONTIG_1	14	-	1001	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	456	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	42	1001	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8237_CONTIG_1	21	-	436	4	incomplete-splice_match	FTCD	ENST00000397743	1834	13	-9	1407	internal_fragment	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	B	coding	127	381	54	434	25	0.49	0.51	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3275_CONTIG_1	19	+	298	2	genic_intron	novelGene_330	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	42	2	NA	2	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.26	0.74	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8370_CONTIG_1	4	+	1855	14	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1755	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	42	1109	25	0.954	0.046	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_723_CONTIG_1	15	-	1066	2	incomplete-splice_match	GATM	ENST00000396659	2597	9	1419	112	5prime_fragment	FALSE	canonical	0	0	80	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8415_CONTIG_1	4	+	676	5	incomplete-splice_match	ALB	ENST00000509063	1911	14	176	1059	internal_fragment	FALSE	canonical	0	0	561	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	179	676	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5927_CONTIG_1	12	+	1974	13	full-splice_match	ALDH2	ENST00000261733	2018	13	31	13	multi-exon	FALSE	canonical	0	0	1551	2	NA	0	0	FALSE	NA	NA	0	C	coding	517	1551	31	1581	25	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8458_CONTIG_1	2	+	1504	5	incomplete-splice_match	CPS1	ENST00000451903	4770	28	3210	56	internal_fragment	FALSE	canonical	0	0	339	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.546	0.454	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3553_CONTIG_1	4	+	379	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	898	206	internal_fragment	FALSE	canonical	0	0	352	2	NA	0	0	FALSE	NA	NA	0	C	coding	33	99	281	379	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1822_CONTIG_1	3	+	1558	11	full-splice_match	KNG1	ENST00000287611	1720	11	87	75	multi-exon	FALSE	canonical	0	0	1383	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	181	1461	50	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3268_CONTIG_1	9	+	356	2	incomplete-splice_match	TOPORS-AS1	ENST00000450093	479	3	130	-7	internal_fragment	FALSE	canonical	0	0	151	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6701_CONTIG_1	12	+	1285	9	full-splice_match	GAPDH	ENST00000229239	1875	9	590	0	multi-exon	FALSE	canonical	0	0	1014	2	NA	0	0	FALSE	NA	NA	0	C	coding	335	1005	77	1081	10	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2979_CONTIG_1	17	+	701	6	novel_in_catalog	ACADVL	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	394	2	NA	0	0	FALSE	NA	NA	0	C	coding	78	234	299	532	5	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6223_CONTIG_1	11	-	1291	3	full-splice_match	APOA5	ENST00000227665	1897	3	24	582	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	coding	363	1089	21	1109	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3624_CONTIG_1	15	+	1914	7	novel_not_in_catalog	CYP1A2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1315	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	63	1343	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4220_CONTIG_1	10	-	924	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	153	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6054_CONTIG_1	10	-	565	5	incomplete-splice_match	RBP4	ENST00000371464	1068	6	-9	512	internal_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	160	480	84	563	25	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5086_CONTIG_1	5	-	1835	5	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	49	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4912_CONTIG_1	11	-	1566	10	full-splice_match	HPX	ENST00000265983	1652	10	77	9	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1120_CONTIG_1	17	+	1617	6	novel_in_catalog	ATP6V0A1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	632	2	NA	0	0	FALSE	NA	NA	0	A	coding	265	795	11	805	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4790_CONTIG_1	2	-	1358	8	full-splice_match	MMADHC	ENST00000303319	1436	8	75	3	multi-exon	FALSE	canonical	0	0	78	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3578_CONTIG_1	19	+	408	4	full-splice_match	APOC1	ENST00000252491	461	4	41	12	multi-exon	FALSE	canonical	0	0	243	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	50	298	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1170_CONTIG_1	6	+	2464	18	full-splice_match	CFB	ENST00000425368	2862	18	385	13	multi-exon	FALSE	canonical	0	0	2267	2	NA	0	0	FALSE	NA	NA	0	C	coding	764	2292	129	2420	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5209_CONTIG_1	4	+	1835	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1774	2	NA	1	0	TRUE	NA	NA	0	C	coding	466	1398	40	1437	25	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8461_CONTIG_1	19	+	550	3	incomplete-splice_match	BSG	ENST00000353555	1616	8	791	275	internal_fragment	FALSE	canonical	0	0	81	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5982_CONTIG_1	16	-	1386	2	antisense	novelGene_ACSM2A_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	1296	2	NA	1	1	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.654	0.346	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5361_CONTIG_1	6	+	804	2	full-splice_match	PNRC1	ENST00000336032	2065	2	1	1260	multi-exon	FALSE	canonical	0	0	656	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.222	0.778	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_606_CONTIG_1	GL000220.1	+	602	2	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	413	2	NA	2	1	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7035_CONTIG_1	11	-	881	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	18	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8442_CONTIG_1	4	-	1473	9	full-splice_match	ADH4	ENST00000265512	1993	9	24	496	multi-exon	FALSE	canonical	0	0	69	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6725_CONTIG_1	4	+	1422	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1109	2	NA	0	0	TRUE	NA	NA	0	C	coding	444	1332	7	1338	35	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4683_CONTIG_1	17	-	1549	8	full-splice_match	VTN	ENST00000226218	2149	8	515	85	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4875_CONTIG_1	21	-	350	2	genic_intron	novelGene_105	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	259	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	90	0.24	0.76	POS	TRUE	Artifact
SAMPLE_1_MOLECULE_963_CONTIG_1	17	+	1060	4	incomplete-splice_match	SERPINF2	ENST00000450523	1462	9	423	-21	internal_fragment	FALSE	canonical	0	0	518	2	NA	0	0	FALSE	NA	NA	0	B	coding	225	675	254	928	15	0.532	0.468	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_687_CONTIG_1	21	-	1159	10	novel_not_in_catalog	FTCD	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	B	coding	11	33	371	403	50	0.78	0.22	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6201_CONTIG_1	6	+	1046	6	full-splice_match	GNMT	ENST00000372808	1072	6	-4	30	multi-exon	FALSE	canonical	0	0	730	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	15	899	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3988_CONTIG_1	19	+	1154	4	full-splice_match	APOE	ENST00000252486	1208	4	48	6	multi-exon	FALSE	canonical	0	0	299	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	64	1014	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2_CONTIG_1	1	-	825	2	antisense	novelGene_DUSP12_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	394	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8128_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	50	168	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1077_CONTIG_1	5	-	1972	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	84	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5480_CONTIG_1	4	+	1538	8	full-splice_match	FGB	ENST00000302068	1975	8	59	378	multi-exon	FALSE	canonical	0	0	1248	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	25	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7175_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3685_CONTIG_1	10	-	2075	5	intergenic	novelGene_201	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	156	2	NA	4	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4337_CONTIG_1	3	+	2305	17	full-splice_match	TF	ENST00000402696	2968	17	439	224	multi-exon	FALSE	canonical	0	0	2108	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	47	2140	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7324_CONTIG_1	2	+	1148	8	full-splice_match	KHK	ENST00000260598	2397	8	444	805	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	298	894	35	928	15	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8316_CONTIG_1	14	+	965	7	incomplete-splice_match	EIF5	ENST00000216554	5945	12	196	4784	3prime_fragment	FALSE	canonical	0	0	919	2	NA	1	0	FALSE	NA	NA	0	B	coding	161	483	481	963	50	0.576	0.424	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1752_CONTIG_1	16	+	316	3	full-splice_match	MT1X	ENST00000394485	450	3	46	88	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2240_CONTIG_1	15	-	2309	9	full-splice_match	GATM	ENST00000396659	2597	9	249	39	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6211_CONTIG_1	1	+	273	2	full-splice_match	APCS	ENST00000255040	926	2	1	652	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2559_CONTIG_1	19	-	750	2	incomplete-splice_match	ZBTB45	ENST00000600990	2159	3	1214	195	5prime_fragment	FALSE	canonical	0	0	200	2	NA	0	0	FALSE	NA	NA	0	A	coding	90	270	185	454	20	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5258_CONTIG_1	19	-	1144	3	novel_not_in_catalog	LRG1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	55	2	NA	0	0	TRUE	NA	NA	0	C	coding	267	801	24	824	10	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6724_CONTIG_1	4	-	371	2	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	not any annotated donor/acceptor	TRUE	non_canonical	0	0	167	2	NA	0	0	TRUE	NA	NA	0	C	coding	117	351	21	371	25	0.942	0.058	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2505_CONTIG_1	4	-	1451	10	novel_in_catalog	FGG	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	318	954	309	1262	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3378_CONTIG_1	14	-	1006	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	456	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	47	1006	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6734_CONTIG_1	19	+	1399	8	full-splice_match	CCDC94	ENST00000262962	1434	8	30	5	multi-exon	FALSE	canonical	0	0	897	2	NA	0	0	FALSE	NA	NA	0	A	coding	323	969	39	1007	10	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7964_CONTIG_1	18	-	752	5	full-splice_match	CYB5A	ENST00000340533	834	5	72	10	multi-exon	FALSE	canonical	0	0	198	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	70	471	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8196_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	50	202	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_923_CONTIG_1	17	-	1146	8	full-splice_match	APOH	ENST00000205948	1176	8	18	12	multi-exon	FALSE	canonical	0	0	84	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6468_CONTIG_1	11	+	1129	5	incomplete-splice_match	CD44	ENST00000425428	1768	8	537	102	internal_fragment	FALSE	canonical	0	0	332	2	NA	0	0	FALSE	NA	NA	0	A	coding	34	102	433	534	25	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_239_CONTIG_1	9	+	748	6	full-splice_match	ORM1	ENST00000259396	802	6	42	12	multi-exon	FALSE	canonical	0	0	576	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4038_CONTIG_1	16	-	1065	9	full-splice_match	HAGH	ENST00000397356	1744	9	392	287	multi-exon	FALSE	canonical	0	0	91	2	NA	0	0	FALSE	NA	NA	0	A	coding	308	924	16	939	35	0.318	0.682	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3654_CONTIG_1	17	+	530	4	full-splice_match	CISD3	ENST00000439660	2074	4	106	1438	multi-exon	FALSE	canonical	0	0	222	2	NA	1	0	FALSE	NA	NA	0	C	coding	127	381	19	399	35	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3970_CONTIG_1	15	+	943	4	full-splice_match	B2M	ENST00000558401	1715	4	36	736	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7399_CONTIG_1	2	-	1476	2	novel_not_in_catalog	CWC22	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	237	2	NA	2	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1831_CONTIG_1	4	+	1604	8	full-splice_match	FGB	ENST00000302068	1975	8	59	312	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	60	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8427_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6220_CONTIG_1	5	-	1321	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	735	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5050_CONTIG_1	4	+	1075	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	851	3prime_fragment	FALSE	canonical	0	0	882	2	NA	0	0	FALSE	NA	NA	0	C	coding	345	1035	40	1074	20	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6481_CONTIG_1	4	+	401	4	full-splice_match	ALB	ENST00000515133	665	4	0	264	multi-exon	FALSE	canonical	0	0	311	2	NA	0	0	FALSE	NA	NA	0	C	coding	120	360	42	401	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8315_CONTIG_1	4	-	1443	9	full-splice_match	ADH1C	ENST00000515683	1740	9	281	16	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	699	1196	25	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3576_CONTIG_1	6	-	1325	6	novel_not_in_catalog	GLO1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	175	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_711_CONTIG_1	1	-	1513	7	novel_in_catalog	C8B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	coding	307	921	120	1040	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_678_CONTIG_1	8	-	989	6	full-splice_match	HRSP12	ENST00000254878	1057	6	67	1	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4148_CONTIG_1	3	+	1506	11	incomplete-splice_match	TF	ENST00000264998	2143	16	615	22	internal_fragment	FALSE	canonical	0	0	1322	2	NA	0	0	FALSE	NA	NA	0	C	coding	424	1272	83	1354	30	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3453_CONTIG_1	11	+	1880	14	full-splice_match	F2	ENST00000311907	2023	14	51	92	multi-exon	FALSE	canonical	0	0	1730	2	NA	0	0	FALSE	NA	NA	0	C	coding	622	1866	6	1871	15	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5941_CONTIG_1	2	+	1244	6	incomplete-splice_match	UGP2	ENST00000445915	1955	10	640	71	internal_fragment	FALSE	canonical	0	0	873	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4465_CONTIG_1	10	-	615	7	incomplete-splice_match	NUDT5	ENST00000378940	1126	10	-22	533	internal_fragment	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	150	450	164	613	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5880_CONTIG_1	6	+	829	4	novel_not_in_catalog	SLC22A1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	636	2	NA	0	0	FALSE	NA	NA	0	C	coding	208	624	46	669	25	0.436	0.564	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6916_CONTIG_1	6	-	973	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	-48	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6888_CONTIG_1	22	-	1699	5	novel_in_catalog	AP1B1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	A	coding	232	696	146	841	50	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_927_CONTIG_1	4	-	1544	10	full-splice_match	FGG	ENST00000404648	1760	10	193	23	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3959_CONTIG_1	17	+	659	4	full-splice_match	EIF1	ENST00000469257	2330	4	-8	1679	multi-exon	FALSE	canonical	0	0	451	2	NA	1	0	FALSE	NA	NA	0	C	coding	113	339	155	493	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1758_CONTIG_1	18	-	1469	3	full-splice_match	IER3IP1	ENST00000256433	1481	3	12	0	multi-exon	FALSE	canonical	0	0	176	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7431_CONTIG_1	7	-	862	8	full-splice_match	PSMA2	ENST00000223321	1483	8	49	572	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8598_CONTIG_1	22	+	1210	4	novel_not_in_catalog	SERPIND1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	959	2	NA	0	0	TRUE	NA	NA	0	C	coding	319	957	39	995	25	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1274_CONTIG_1	10	+	1571	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	96	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5659_CONTIG_1	14	-	1006	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	457	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	319	957	48	1004	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4822_CONTIG_1	11	+	516	4	full-splice_match	APOC3	ENST00000227667	550	4	17	17	multi-exon	FALSE	canonical	0	0	224	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	46	342	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5173_CONTIG_1	10	+	1193	9	full-splice_match	AKR1C1	ENST00000380872	6705	9	162	5350	multi-exon	FALSE	canonical	0	0	959	2	NA	1	0	FALSE	NA	NA	0	C	coding	323	969	31	999	35	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3550_CONTIG_1	10	+	1370	9	incomplete-splice_match	ITIH2	ENST00000379587	2848	20	1618	-140	internal_fragment	FALSE	canonical	0	0	1077	2	NA	0	0	FALSE	NA	NA	0	B	coding	385	1155	68	1222	40	0.632	0.368	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8718_CONTIG_1	14	-	960	3	novel_in_catalog	SERPINA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	306	918	42	959	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3717_CONTIG_1	6	+	1879	10	novel_not_in_catalog	HSP90AB1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1503	2	NA	2	0	TRUE	NA	NA	0	B	coding	505	1515	96	1610	30	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4682_CONTIG_1	4	+	1826	8	full-splice_match	FGB	ENST00000302068	1975	8	56	93	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1677_CONTIG_1	4	+	1350	11	full-splice_match	ALB	ENST00000511370	1519	11	83	86	multi-exon	FALSE	canonical	0	0	1303	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	414	1277	5	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5997_CONTIG_1	4	+	2034	15	full-splice_match	ALB	ENST00000295897	2263	15	48	181	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1554_CONTIG_1	9	+	749	6	full-splice_match	ORM1	ENST00000259396	802	6	45	8	multi-exon	FALSE	canonical	0	0	573	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	34	636	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_736_CONTIG_1	4	+	1581	8	full-splice_match	FGB	ENST00000302068	1975	8	56	338	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5211_CONTIG_1	19	-	2014	18	incomplete-splice_match	C3	ENST00000245907	5263	41	3105	144	5prime_fragment	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	B	coding	649	1947	31	1977	20	0.664	0.336	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7088_CONTIG_1	14	-	1008	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	455	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7552_CONTIG_1	12	+	1286	9	full-splice_match	GAPDH	ENST00000229239	1875	9	590	-1	multi-exon	FALSE	canonical	0	0	1014	2	NA	0	0	FALSE	NA	NA	0	C	coding	335	1005	77	1081	10	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_376_CONTIG_1	16	+	1397	7	full-splice_match	HP	ENST00000355906	1443	7	31	15	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4423_CONTIG_1	2	-	1366	8	full-splice_match	MMADHC	ENST00000303319	1436	8	60	10	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3351_CONTIG_1	4	-	1553	10	full-splice_match	FGG	ENST00000404648	1760	10	190	17	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	51	1361	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4417_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	17	-1	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	5	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3101_CONTIG_1	12	+	1074	4	novel_not_in_catalog	LTBR	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	445	2	NA	0	0	TRUE	NA	NA	0	C	coding	99	297	156	452	30	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1608_CONTIG_1	16	+	1235	5	full-splice_match	HP	ENST00000398131	1252	5	17	0	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_924_CONTIG_1	19	+	976	6	incomplete-splice_match	HPN	ENST00000392226	1783	14	746	61	internal_fragment	FALSE	canonical	0	0	714	2	NA	0	0	FALSE	NA	NA	0	B	coding	82	246	505	750	10	0.602	0.398	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5208_CONTIG_1	4	+	483	4	full-splice_match	ALB	ENST00000484992	693	4	162	48	multi-exon	FALSE	canonical	0	0	447	2	NA	0	0	FALSE	NA	NA	0	C	coding	120	360	122	481	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8715_CONTIG_1	4	+	2020	15	full-splice_match	ALB	ENST00000295897	2263	15	50	193	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7504_CONTIG_1	16	-	791	3	novel_not_in_catalog	TXNL4B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	76	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4222_CONTIG_1	1	-	1000	9	incomplete-splice_match	CDK11A	ENST00000358779	2419	20	-3	1422	internal_fragment	FALSE	canonical	0	0	70	2	NA	0	0	FALSE	NA	NA	0	A	coding	162	486	513	998	35	0.354	0.646	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7410_CONTIG_1	16	+	1233	5	full-splice_match	HP	ENST00000398131	1252	5	17	2	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_823_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_659_CONTIG_1	19	+	333	4	full-splice_match	APOC1	ENST00000252491	461	4	42	86	multi-exon	FALSE	canonical	0	0	242	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	49	297	30	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6417_CONTIG_1	4	+	2059	15	full-splice_match	ALB	ENST00000295897	2263	15	48	156	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_88_CONTIG_1	19	+	551	3	antisense	novelGene_TNFSF14_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	438	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4146_CONTIG_1	1	-	1445	7	full-splice_match	TXNDC12	ENST00000371626	2396	7	945	6	multi-exon	FALSE	canonical	0	0	227	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	131	646	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5875_CONTIG_1	9	-	1509	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	893	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	35	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8026_CONTIG_1	12	+	431	4	novel_not_in_catalog	PEBP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	376	2	NA	0	0	TRUE	NA	NA	0	C	coding	103	309	102	410	30	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1110_CONTIG_1	19	-	1857	5	full-splice_match	PGLYRP2	ENST00000340880	2230	5	351	22	multi-exon	FALSE	canonical	0	0	191	2	NA	0	0	FALSE	NA	NA	0	C	coding	575	1725	131	1855	55	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1498_CONTIG_1	10	-	818	7	novel_not_in_catalog	RBP4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	65	2	NA	0	0	TRUE	NA	NA	0	C	coding	169	507	84	590	10	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8705_CONTIG_1	12	-	852	2	full-splice_match	UBC	ENST00000339647	2688	2	497	1339	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	261	783	68	850	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_185_CONTIG_1	10	-	914	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	163	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6264_CONTIG_1	7	-	356	2	full-splice_match	CYP3A5	ENST00000473347	2594	2	477	1761	multi-exon	FALSE	canonical	0	0	290	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_749_CONTIG_1	12	-	895	6	full-splice_match	CSRP2	ENST00000311083	943	6	41	7	multi-exon	TRUE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	A	coding	193	579	84	662	15	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5894_CONTIG_1	4	-	1489	10	full-splice_match	FGG	ENST00000404648	1760	10	193	78	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	45	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1974_CONTIG_1	16	+	691	5	full-splice_match	COX4I1	ENST00000253452	708	5	13	4	multi-exon	FALSE	canonical	0	0	430	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	172	564	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6413_CONTIG_1	17	-	976	3	genic	LINC00854	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	22	2	NA	8	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.944	0.056	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2360_CONTIG_1	14	+	1574	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	1	multi-exon	FALSE	canonical	0	0	1133	2	NA	1	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	10	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8660_CONTIG_1	4	-	1497	10	full-splice_match	FGG	ENST00000404648	1760	10	193	70	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6950_CONTIG_1	19	+	772	7	full-splice_match	GPX4	ENST00000354171	908	7	126	10	multi-exon	FALSE	canonical	0	0	542	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2424_CONTIG_1	5	-	297	3	full-splice_match	SEPP1	ENST00000506078	799	3	0	502	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3365_CONTIG_1	17	-	1157	8	full-splice_match	APOH	ENST00000205948	1176	8	18	1	multi-exon	FALSE	canonical	0	0	84	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6774_CONTIG_1	10	+	1822	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	38	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3670_CONTIG_1	10	-	840	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	237	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_290_CONTIG_1	3	+	1603	2	novel_in_catalog	NR1I2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	130	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1471_CONTIG_1	17	-	1036	7	full-splice_match	PHB	ENST00000300408	1832	7	0	796	multi-exon	FALSE	canonical	0	0	46	2	NA	1	0	FALSE	NA	NA	0	C	coding	272	816	74	889	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4367_CONTIG_1	20	+	1009	4	full-splice_match	C20orf24	ENST00000344795	1114	4	75	30	multi-exon	FALSE	canonical	0	0	491	2	NA	0	0	FALSE	NA	NA	0	A	coding	129	387	144	530	45	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7889_CONTIG_1	9	-	581	5	incomplete-splice_match	ANAPC2	ENST00000323927	2632	13	1539	512	internal_fragment	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	A	coding	152	456	126	581	15	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_158_CONTIG_1	9	-	1505	5	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	648	298	5prime_fragment	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	174	569	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5197_CONTIG_1	18	-	1630	12	incomplete-splice_match	TCF4	ENST00000561831	1823	13	211	-18	5prime_fragment	FALSE	canonical	0	0	106	2	NA	1	0	FALSE	NA	NA	0	A	coding	361	1083	370	1452	80	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6067_CONTIG_1	3	+	1350	11	incomplete-splice_match	TF	ENST00000264998	2143	16	730	63	internal_fragment	FALSE	canonical	0	0	1207	2	NA	0	0	FALSE	NA	NA	0	C	coding	371	1113	127	1239	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2080_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	50	163	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1861_CONTIG_1	11	+	1950	14	full-splice_match	F2	ENST00000311907	2023	14	53	20	multi-exon	FALSE	canonical	0	0	1728	2	NA	0	0	FALSE	NA	NA	0	C	coding	622	1866	4	1869	40	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_255_CONTIG_1	1	-	1247	5	full-splice_match	MRPL55	ENST00000411464	1253	5	6	0	multi-exon	FALSE	canonical	0	0	145	2	NA	1	0	FALSE	NA	NA	0	A	coding	128	384	789	1172	10	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1122_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	450	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	42	1007	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5846_CONTIG_1	4	+	1133	2	novel_in_catalog	UGDH-AS1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	593	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.21	0.79	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3451_CONTIG_1	4	+	1857	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1696	2	NA	1	0	TRUE	NA	NA	0	C	coding	257	771	900	1670	35	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8516_CONTIG_1	2	+	954	3	incomplete-splice_match	UGT1A6	ENST00000373424	1128	6	453	-279	internal_fragment	FALSE	canonical	0	0	268	2	NA	0	0	FALSE	NA	NA	0	A	coding	169	507	57	563	25	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3238_CONTIG_1	19	+	1165	4	full-splice_match	APOE	ENST00000252486	1208	4	42	1	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7799_CONTIG_1	13	-	1962	2	full-splice_match	GJB2	ENST00000382848	2250	2	-40	328	multi-exon	FALSE	canonical	0	0	156	2	NA	0	0	FALSE	NA	NA	0	C	coding	226	678	179	856	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5624_CONTIG_1	20	+	2471	2	novel_in_catalog	LBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	159	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	36	401	75	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2995_CONTIG_1	X	+	1532	2	full-splice_match	GJB1	ENST00000374022	1904	2	27	345	multi-exon	FALSE	canonical	0	0	52	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	69	917	45	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8387_CONTIG_1	17	-	1625	8	full-splice_match	VTN	ENST00000226218	2149	8	515	9	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8371_CONTIG_1	4	+	2017	15	full-splice_match	ALB	ENST00000295897	2263	15	50	196	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5683_CONTIG_1	11	+	1430	8	full-splice_match	CD151	ENST00000397421	1486	8	56	0	multi-exon	FALSE	canonical	0	0	728	2	NA	0	0	FALSE	NA	NA	0	A	coding	253	759	27	785	15	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8527_CONTIG_1	4	+	2025	15	full-splice_match	ALB	ENST00000295897	2263	15	48	190	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	50	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4821_CONTIG_1	17	+	819	7	full-splice_match	RPAIN	ENST00000381209	1535	7	552	164	multi-exon	FALSE	canonical	0	0	648	2	NA	0	0	FALSE	NA	NA	0	A	coding	187	561	115	675	10	0.314	0.686	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6510_CONTIG_1	3	+	1377	11	incomplete-splice_match	ITIH1	ENST00000537050	2486	18	1078	31	internal_fragment	FALSE	canonical	0	0	1128	2	NA	0	0	FALSE	NA	NA	0	C	coding	365	1095	161	1255	30	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5715_CONTIG_1	2	+	1621	16	full-splice_match	HADHB	ENST00000317799	2044	16	25	398	multi-exon	FALSE	canonical	0	0	1468	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	80	1501	25	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7190_CONTIG_1	9	-	1258	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	4	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_553_CONTIG_1	4	+	1914	15	full-splice_match	ALB	ENST00000295897	2263	15	48	301	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3935_CONTIG_1	14	+	313	3	novel_in_catalog	RNASE4	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	203	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1640_CONTIG_1	16	+	1234	5	full-splice_match	HP	ENST00000398131	1252	5	17	1	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6542_CONTIG_1	4	-	1562	10	full-splice_match	FGG	ENST00000404648	1760	10	193	5	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7768_CONTIG_1	4	+	1914	15	full-splice_match	ALB	ENST00000295897	2263	15	50	299	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	55	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8421_CONTIG_1	10	-	927	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	150	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7213_CONTIG_1	2	-	1644	12	novel_not_in_catalog	PDIA6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	108	2	NA	2	0	TRUE	NA	NA	0	C	coding	409	1227	90	1316	20	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3399_CONTIG_1	11	+	1622	7	novel_in_catalog	GLYATL1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	835	2	NA	0	0	FALSE	NA	NA	0	B	coding	302	906	345	1250	45	0.628	0.372	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7010_CONTIG_1	11	+	1374	6	incomplete-splice_match	SERPING1	ENST00000378324	1751	7	286	91	internal_fragment	FALSE	canonical	0	0	945	2	NA	0	0	FALSE	NA	NA	0	C	coding	341	1023	174	1196	10	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5057_CONTIG_1	17	+	357	2	full-splice_match	UBB	ENST00000302182	1225	2	296	572	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6096_CONTIG_1	1	-	2350	14	novel_in_catalog	C8B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	159	2	NA	0	0	FALSE	NA	NA	0	C	coding	529	1587	605	2191	45	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_154_CONTIG_1	11	+	609	3	incomplete-splice_match	LDHA	ENST00000430553	1310	7	539	162	internal_fragment	FALSE	canonical	0	0	220	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_796_CONTIG_1	5	-	2046	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	10	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.278	0.722	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8593_CONTIG_1	17	-	834	8	full-splice_match	DCXR	ENST00000306869	887	8	31	22	multi-exon	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	coding	244	732	20	751	20	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5852_CONTIG_1	4	-	2100	6	full-splice_match	UGT2B4	ENST00000305107	2103	6	0	3	multi-exon	FALSE	canonical	0	0	768	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8659_CONTIG_1	3	-	1172	11	novel_not_in_catalog	MST1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	236	2	NA	0	0	TRUE	NA	NA	0	A	coding	331	993	179	1171	15	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1130_CONTIG_1	19	+	869	4	full-splice_match	FTL	ENST00000331825	878	4	8	1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2961_CONTIG_1	4	-	1078	4	full-splice_match	CXCL2	ENST00000508487	1218	4	98	42	multi-exon	FALSE	canonical	0	0	175	2	NA	1	0	FALSE	NA	NA	0	C	coding	107	321	76	396	55	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8061_CONTIG_1	4	+	2036	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	0	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	60	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7697_CONTIG_1	4	-	541	5	full-splice_match	FGG	ENST00000464532	703	5	0	162	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	164	492	48	539	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3502_CONTIG_1	18	+	940	4	full-splice_match	MYL12A	ENST00000217652	1229	4	286	3	multi-exon	FALSE	canonical	0	0	452	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2183_CONTIG_1	14	-	1058	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	405	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	337	1011	48	1058	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5561_CONTIG_1	1	+	595	6	full-splice_match	RPL11	ENST00000374550	634	6	27	12	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	178	534	19	552	25	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_595_CONTIG_1	6	-	980	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	-55	multi-exon	FALSE	canonical	0	0	32	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_11_CONTIG_1	12	+	629	6	full-splice_match	MYL6	ENST00000547649	655	6	8	18	multi-exon	FALSE	canonical	0	0	459	2	NA	0	0	FALSE	NA	NA	0	C	coding	151	453	33	485	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5570_CONTIG_1	3	-	1523	5	full-splice_match	CNBP	ENST00000502976	1626	5	9	94	multi-exon	FALSE	canonical	0	0	121	2	NA	0	0	FALSE	NA	NA	0	C	coding	170	510	136	645	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4529_CONTIG_1	11	+	1063	5	full-splice_match	TAGLN	ENST00000392951	928	5	54	-189	multi-exon	FALSE	canonical	0	0	531	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	71	673	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1843_CONTIG_1	4	+	1582	8	full-splice_match	FGB	ENST00000302068	1975	8	59	334	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4281_CONTIG_1	4	+	1870	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	18	multi-exon	FALSE	canonical	0	0	1357	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1304_CONTIG_1	2	+	339	4	full-splice_match	RPL37A	ENST00000491306	3112	4	656	2117	multi-exon	FALSE	canonical	0	0	245	2	NA	0	0	FALSE	NA	NA	0	A	coding	92	276	31	306	40	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5845_CONTIG_1	17	-	1163	8	full-splice_match	APOH	ENST00000205948	1176	8	7	6	multi-exon	FALSE	canonical	0	0	95	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1530_CONTIG_1	17	+	1155	11	incomplete-splice_match	PSMC5	ENST00000310144	1579	12	294	130	3prime_fragment	FALSE	canonical	0	0	1094	2	NA	0	0	FALSE	NA	NA	0	A	coding	380	1140	15	1154	30	0.228	0.772	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8223_CONTIG_1	8	-	1623	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1108	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7613_CONTIG_1	1	-	771	2	genic	TP73-AS1	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	577	2	NA	1	1	TRUE	NA	NA	0	A	coding	92	276	79	354	65	0.952	0.048	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6140_CONTIG_1	12	-	1738	10	full-splice_match	ATP5B	ENST00000262030	1789	10	26	25	multi-exon	FALSE	canonical	0	0	152	2	NA	0	0	FALSE	NA	NA	0	C	coding	417	1251	362	1612	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5869_CONTIG_1	4	-	1565	10	full-splice_match	FGG	ENST00000404648	1760	10	193	2	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2989_CONTIG_1	X	+	732	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1439	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	15	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8604_CONTIG_1	19	+	865	4	full-splice_match	FTL	ENST00000331825	878	4	8	5	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3501_CONTIG_1	3	-	2039	14	full-splice_match	TKT	ENST00000462138	3010	14	12	959	multi-exon	FALSE	canonical	0	0	184	2	NA	0	0	FALSE	NA	NA	0	C	coding	623	1869	78	1946	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3575_CONTIG_1	22	-	1908	8	incomplete-splice_match	ALG12	ENST00000330817	5350	10	496	2946	5prime_fragment	FALSE	canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	A	coding	364	1092	151	1242	30	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3464_CONTIG_1	19	-	1733	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	31	multi-exon	FALSE	canonical	0	0	201	2	NA	3	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	40	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2061_CONTIG_1	2	-	343	2	incomplete-splice_match	APOB	ENST00000233242	14121	29	2382	11396	internal_fragment	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	B	coding	111	333	9	341	30	0.566	0.434	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5757_CONTIG_1	9	+	759	6	full-splice_match	ORM1	ENST00000259396	802	6	42	1	multi-exon	FALSE	canonical	0	0	576	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6123_CONTIG_1	17	-	1634	8	full-splice_match	VTN	ENST00000226218	2149	8	515	0	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_673_CONTIG_1	14	+	1587	5	full-splice_match	SERPINA4	ENST00000557004	2012	5	351	74	multi-exon	FALSE	canonical	0	0	1153	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	71	1351	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1533_CONTIG_1	7	-	1185	4	full-splice_match	AZGP1	ENST00000292401	1307	4	116	6	multi-exon	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	C	coding	295	885	31	915	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8591_CONTIG_1	11	-	1523	10	full-splice_match	HPX	ENST00000265983	1652	10	77	52	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5455_CONTIG_1	19	-	1077	10	novel_not_in_catalog	ECH1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	72	2	NA	0	0	TRUE	NA	NA	0	C	coding	284	852	21	872	55	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4884_CONTIG_1	4	+	1547	8	full-splice_match	FGB	ENST00000302068	1975	8	56	372	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	8	1480	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6719_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	48	173	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_231_CONTIG_1	8	+	2056	19	full-splice_match	EPHX2	ENST00000521400	3140	19	418	666	multi-exon	FALSE	canonical	0	0	1601	2	NA	1	0	FALSE	NA	NA	0	A	coding	555	1665	13	1677	50	0.476	0.524	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5113_CONTIG_1	4	+	1843	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	48	372	3prime_fragment	FALSE	canonical	0	0	1826	2	NA	0	0	FALSE	NA	NA	0	C	coding	600	1800	42	1841	25	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2860_CONTIG_1	17	-	875	8	full-splice_match	WBP2	ENST00000254806	1944	8	85	984	multi-exon	FALSE	canonical	0	0	97	2	NA	0	0	FALSE	NA	NA	0	A	coding	261	783	39	821	5	0.278	0.722	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5193_CONTIG_1	1	+	2261	12	novel_not_in_catalog	UAP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1698	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.442	0.558	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3091_CONTIG_1	10	-	386	4	incomplete-splice_match	RBP4	ENST00000371464	1068	6	-9	691	internal_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	84	386	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6443_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	441	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	325	975	48	1022	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7666_CONTIG_1	1	-	1564	9	full-splice_match	HMGCL	ENST00000374490	1600	9	16	20	multi-exon	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	29	1003	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1467_CONTIG_1	12	+	1075	3	full-splice_match	LYRM5	ENST00000556885	1086	3	7	4	multi-exon	FALSE	canonical	0	0	154	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1641_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6607_CONTIG_1	10	-	1443	11	full-splice_match	NSUN6	ENST00000377304	2201	11	441	317	multi-exon	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.23	0.77	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5540_CONTIG_1	12	-	1767	8	full-splice_match	KRT8	ENST00000293308	1777	8	15	-5	multi-exon	FALSE	canonical	0	0	400	2	NA	0	0	FALSE	NA	NA	0	C	coding	483	1449	77	1525	5	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2859_CONTIG_1	7	-	560	4	full-splice_match	MRPS24	ENST00000317534	707	4	38	109	multi-exon	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	A	coding	167	501	25	525	35	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7654_CONTIG_1	22	+	1040	3	novel_not_in_catalog	MPST	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	430	2	NA	2	0	FALSE	NA	NA	0	B	coding	102	306	84	389	0	0.502	0.498	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4420_CONTIG_1	10	+	683	5	full-splice_match	MSRB2	ENST00000376510	1803	5	76	1044	multi-exon	FALSE	canonical	0	0	471	2	NA	0	0	FALSE	NA	NA	0	A	coding	182	546	28	573	15	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7587_CONTIG_1	8	-	1413	4	novel_in_catalog	ST3GAL1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	183	2	NA	0	0	FALSE	NA	NA	0	B	coding	172	516	5	520	25	0.51	0.49	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7397_CONTIG_1	4	+	1966	15	full-splice_match	ALB	ENST00000295897	2263	15	50	247	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5021_CONTIG_1	7	-	1742	7	novel_not_in_catalog	ACTB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	75	2	NA	1	0	TRUE	NA	NA	0	C	coding	375	1125	82	1206	45	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6612_CONTIG_1	3	+	338	2	incomplete-splice_match	AHSG	ENST00000478441	1269	4	-23	954	3prime_fragment	FALSE	canonical	0	0	293	2	NA	0	0	FALSE	NA	NA	0	C	coding	86	258	81	338	20	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2204_CONTIG_1	15	+	946	4	full-splice_match	B2M	ENST00000558401	1715	4	36	733	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3313_CONTIG_1	8	-	1628	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1103	multi-exon	FALSE	canonical	0	0	46	2	NA	1	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	30	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5579_CONTIG_1	1	+	919	2	full-splice_match	APCS	ENST00000255040	926	2	1	6	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6647_CONTIG_1	11	-	571	4	full-splice_match	SAA4	ENST00000278222	727	4	146	10	multi-exon	FALSE	canonical	0	0	31	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	36	425	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1525_CONTIG_1	4	+	1981	15	full-splice_match	ALB	ENST00000295897	2263	15	45	237	multi-exon	FALSE	canonical	0	0	1897	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	45	1871	50	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2734_CONTIG_1	1	+	1666	4	incomplete-splice_match	ARF1	ENST00000272102	1885	5	106	113	internal_fragment	FALSE	canonical	0	0	421	2	NA	0	0	FALSE	NA	NA	0	A	coding	181	543	38	580	30	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5706_CONTIG_1	17	-	1030	7	full-splice_match	PHB	ENST00000300408	1832	7	0	802	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	272	816	74	889	35	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1075_CONTIG_1	2	-	923	3	novel_not_in_catalog	THAP4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	144	2	NA	0	0	TRUE	NA	NA	0	A	coding	193	579	68	646	30	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2140_CONTIG_1	4	+	1580	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	523	160	internal_fragment	FALSE	canonical	0	0	1419	2	NA	0	0	FALSE	NA	NA	0	C	coding	463	1389	5	1393	35	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2441_CONTIG_1	16	+	315	3	full-splice_match	MT1X	ENST00000394485	450	3	46	89	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2887_CONTIG_1	9	+	754	6	full-splice_match	ORM1	ENST00000259396	802	6	48	0	multi-exon	FALSE	canonical	0	0	570	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	31	633	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7599_CONTIG_1	11	-	877	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	22	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1712_CONTIG_1	17	+	695	5	incomplete-splice_match	EIF4A1	ENST00000293831	1756	11	676	385	internal_fragment	FALSE	canonical	0	0	416	2	NA	0	0	FALSE	NA	NA	0	B	coding	179	537	22	558	45	0.546	0.454	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4547_CONTIG_1	7	+	1505	4	full-splice_match	IGFBP1	ENST00000275525	1653	4	131	17	multi-exon	FALSE	canonical	0	0	813	2	NA	0	0	FALSE	NA	NA	0	C	coding	259	777	166	942	30	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1012_CONTIG_1	7	+	1329	3	novel_not_in_catalog	DNAJB6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	708	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4628_CONTIG_1	4	-	1585	6	incomplete-splice_match	ADH4	ENST00000423445	1961	9	365	11	5prime_fragment	FALSE	canonical	0	0	42	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3415_CONTIG_1	4	+	1996	15	full-splice_match	ALB	ENST00000295897	2263	15	51	216	multi-exon	FALSE	canonical	0	0	1891	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	15	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_778_CONTIG_1	1	-	476	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	2	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_981_CONTIG_1	7	-	1617	2	incomplete-splice_match	TSPAN12	ENST00000222747	2796	8	1137	42	5prime_fragment	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5157_CONTIG_1	X	+	540	4	incomplete-splice_match	EBP	ENST00000446158	714	6	210	-36	internal_fragment	FALSE	canonical	0	0	492	2	NA	1	0	FALSE	NA	NA	0	C	coding	172	516	24	539	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4145_CONTIG_1	6	+	1431	13	incomplete-splice_match	CFB	ENST00000425368	2862	18	1394	37	internal_fragment	FALSE	canonical	0	0	1258	2	NA	0	0	FALSE	NA	NA	0	C	coding	400	1200	212	1411	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4810_CONTIG_1	9	-	982	7	novel_not_in_catalog	FAM102A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	542	2	NA	0	0	TRUE	NA	NA	0	A	coding	177	531	397	927	20	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8399_CONTIG_1	4	+	2009	15	full-splice_match	ALB	ENST00000295897	2263	15	50	204	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4502_CONTIG_1	14	+	791	9	full-splice_match	GSTZ1	ENST00000553586	979	9	-6	194	multi-exon	FALSE	canonical	0	0	569	2	NA	0	0	FALSE	NA	NA	0	A	coding	217	651	43	693	25	0.27	0.73	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_75_CONTIG_1	4	-	1829	3	incomplete-splice_match	ADH6	ENST00000394899	2802	9	973	0	5prime_fragment	FALSE	canonical	0	0	85	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4157_CONTIG_1	1	-	1682	11	full-splice_match	ALDH9A1	ENST00000354775	2696	11	286	728	multi-exon	FALSE	canonical	0	0	200	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	92	1573	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7490_CONTIG_1	1	-	1575	9	full-splice_match	HMGCL	ENST00000374490	1600	9	21	4	multi-exon	FALSE	canonical	0	0	83	2	NA	0	0	FALSE	NA	NA	0	C	coding	325	975	24	998	25	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2415_CONTIG_1	16	+	393	3	full-splice_match	MT2A	ENST00000245185	786	3	385	8	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3334_CONTIG_1	4	-	2103	5	full-splice_match	FGA	ENST00000403106	2248	5	22	123	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3610_CONTIG_1	11	-	825	4	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	18	2	NA	0	0	TRUE	NA	NA	0	C	coding	244	732	39	770	15	0.936	0.064	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8255_CONTIG_1	10	+	1641	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	26	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1057_CONTIG_1	4	-	875	5	incomplete-splice_match	FGG	ENST00000405164	1539	10	631	33	5prime_fragment	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	coding	148	444	295	738	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4456_CONTIG_1	4	-	1471	10	full-splice_match	FGG	ENST00000404648	1760	10	193	96	multi-exon	FALSE	canonical	0	0	125	2	NA	2	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7941_CONTIG_1	14	-	512	2	full-splice_match	RPL36AL	ENST00000298289	746	2	65	169	multi-exon	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	coding	106	318	96	413	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8120_CONTIG_1	11	-	1404	11	novel_not_in_catalog	HPX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	110	2	NA	0	0	TRUE	NA	NA	0	C	coding	402	1206	28	1233	15	0.948	0.052	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_381_CONTIG_1	8	-	613	5	incomplete-splice_match	TOP1MT	ENST00000329245	1958	14	-29	1374	internal_fragment	FALSE	canonical	0	0	186	2	NA	0	0	FALSE	NA	NA	0	A	coding	183	549	65	613	55	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7627_CONTIG_1	20	+	1578	13	novel_not_in_catalog	SLC17A9	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	B	coding	198	594	132	725	0	0.69	0.31	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6014_CONTIG_1	10	-	910	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	167	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4768_CONTIG_1	4	+	2011	15	full-splice_match	ALB	ENST00000295897	2263	15	50	202	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2657_CONTIG_1	1	+	872	2	full-splice_match	APCS	ENST00000255040	926	2	1	53	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8103_CONTIG_1	13	-	811	6	full-splice_match	TPT1	ENST00000530705	1028	6	187	30	multi-exon	FALSE	canonical	0	0	142	2	NA	1	0	FALSE	NA	NA	0	C	coding	172	516	115	630	45	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3629_CONTIG_1	9	+	839	6	full-splice_match	ORM1	ENST00000259396	802	6	-37	0	multi-exon	FALSE	canonical	0	0	655	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	116	718	20	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7646_CONTIG_1	X	+	597	2	novel_not_in_catalog	IL3RA	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	260	2	NA	2	1	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1396_CONTIG_1	5	+	1292	9	novel_not_in_catalog	SMN1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	788	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5244_CONTIG_1	6	-	1894	3	full-splice_match	PERP	ENST00000421351	4290	3	55	2341	multi-exon	FALSE	canonical	0	0	330	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8245_CONTIG_1	9	-	1244	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	18	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4563_CONTIG_1	4	+	1272	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1075	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3382_CONTIG_1	10	-	779	2	incomplete-splice_match	ABI1	ENST00000376140	1446	11	1208	-541	5prime_fragment	FALSE	canonical	0	0	62	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7544_CONTIG_1	10	-	1283	8	full-splice_match	ECHS1	ENST00000368547	1617	8	330	4	multi-exon	FALSE	canonical	0	0	114	2	NA	0	0	FALSE	NA	NA	0	C	coding	290	870	27	896	20	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6321_CONTIG_1	7	+	2003	8	incomplete-splice_match	AKAP9	ENST00000356239	12471	50	-5	10473	3prime_fragment	FALSE	canonical	0	0	1168	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.324	0.676	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2407_CONTIG_1	4	-	1099	8	incomplete-splice_match	ADH1A	ENST00000209668	1499	9	68	332	internal_fragment	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	351	1053	47	1099	50	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_41_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3423_CONTIG_1	5	-	1202	5	full-splice_match	SEPP1	ENST00000514985	2243	5	189	852	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	613	912	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1254_CONTIG_1	6	+	715	2	novel_in_catalog	MRS2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	299	2	NA	0	0	FALSE	NA	NA	0	A	coding	141	423	110	532	25	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6310_CONTIG_1	19	+	403	4	full-splice_match	APOC1	ENST00000252491	461	4	44	14	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7624_CONTIG_1	1	+	2266	8	incomplete-splice_match	HAO2	ENST00000361035	1668	9	114	-712	internal_fragment	FALSE	canonical	0	0	1208	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.626	0.374	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3190_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	446	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	47	1015	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6291_CONTIG_1	16	-	652	9	novel_not_in_catalog	RP11-345J4.8	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	81	2	NA	1	0	TRUE	NA	NA	0	A	coding	124	372	125	496	25	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6186_CONTIG_1	17	-	1922	6	full-splice_match	ACTG1	ENST00000331925	1994	6	72	0	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	76	1200	10	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2322_CONTIG_1	17	-	953	6	full-splice_match	SAT2	ENST00000380466	974	6	4	17	multi-exon	FALSE	canonical	0	0	313	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	11	757	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2242_CONTIG_1	21	+	633	5	full-splice_match	SOD1	ENST00000270142	966	5	71	262	multi-exon	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	78	539	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7235_CONTIG_1	4	-	1644	10	full-splice_match	FGG	ENST00000404648	1760	10	190	-74	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	51	1361	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4573_CONTIG_1	6	+	502	6	full-splice_match	RPS12	ENST00000230050	631	6	128	1	multi-exon	FALSE	canonical	0	0	418	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	83	478	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1506_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	48	172	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	55	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4973_CONTIG_1	9	+	760	6	full-splice_match	ORM1	ENST00000259396	802	6	42	0	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7409_CONTIG_1	11	-	841	5	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	109	2	NA	0	0	TRUE	NA	NA	0	C	coding	219	657	130	786	15	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5627_CONTIG_1	17	-	1519	8	full-splice_match	VTN	ENST00000226218	2149	8	580	50	multi-exon	FALSE	canonical	0	0	103	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	40	1473	10	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5592_CONTIG_1	4	-	1010	5	incomplete-splice_match	DHX15	ENST00000336812	2994	14	1915	69	5prime_fragment	FALSE	canonical	0	0	28	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.254	0.746	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_477_CONTIG_1	19	-	1737	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	27	multi-exon	FALSE	canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	30	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6276_CONTIG_1	15	-	1275	4	incomplete-splice_match	GATM	ENST00000396659	2597	9	1240	82	5prime_fragment	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2940_CONTIG_1	5	-	1839	13	novel_in_catalog	CLPTM1L	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	410	2	NA	0	0	FALSE	NA	NA	0	A	coding	313	939	408	1346	5	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2823_CONTIG_1	17	-	831	8	full-splice_match	DCXR	ENST00000306869	887	8	31	25	multi-exon	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	coding	244	732	20	751	25	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3024_CONTIG_1	4	+	1853	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	48	362	3prime_fragment	FALSE	canonical	0	0	1826	2	NA	0	0	FALSE	NA	NA	0	C	coding	604	1812	42	1853	25	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_339_CONTIG_1	4	+	2026	15	full-splice_match	ALB	ENST00000295897	2263	15	50	187	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_922_CONTIG_1	17	-	1530	8	full-splice_match	VTN	ENST00000226218	2149	8	515	104	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	475	1425	105	1529	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6931_CONTIG_1	17	-	591	3	full-splice_match	ACTG1	ENST00000574671	1678	3	397	690	multi-exon	FALSE	canonical	0	0	264	2	NA	0	0	FALSE	NA	NA	0	C	coding	186	558	30	587	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8016_CONTIG_1	6	+	1395	4	incomplete-splice_match	BPHL	ENST00000380379	1928	7	439	94	internal_fragment	FALSE	canonical	0	0	398	2	NA	1	0	FALSE	NA	NA	0	A	coding	133	399	85	483	45	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3193_CONTIG_1	18	-	1853	12	full-splice_match	ATP5A1	ENST00000398752	1916	12	63	0	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	553	1659	60	1718	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5398_CONTIG_1	14	+	836	4	incomplete-splice_match	SERPINA3	ENST00000393080	1581	5	682	63	internal_fragment	FALSE	canonical	0	0	454	2	NA	0	0	FALSE	NA	NA	0	C	coding	205	615	41	655	20	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1621_CONTIG_1	1	+	2424	21	incomplete-splice_match	CHD1L	ENST00000369258	2967	23	47	496	3prime_fragment	FALSE	canonical	0	0	2364	2	NA	1	0	FALSE	NA	NA	0	A	coding	745	2235	190	2424	25	0.4	0.6	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5316_CONTIG_1	4	-	1634	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	33	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	55	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_748_CONTIG_1	4	+	729	7	incomplete-splice_match	ALB	ENST00000415165	1483	11	633	121	internal_fragment	FALSE	canonical	0	0	685	2	NA	0	0	FALSE	NA	NA	0	C	coding	140	420	240	659	5	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1789_CONTIG_1	1	-	1089	7	novel_in_catalog	SRSF4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6946_CONTIG_1	15	+	944	4	full-splice_match	B2M	ENST00000558401	1715	4	36	735	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2207_CONTIG_1	6	+	943	5	full-splice_match	TMEM14A	ENST00000211314	992	5	43	6	multi-exon	FALSE	canonical	0	0	370	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8503_CONTIG_1	11	-	886	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	12	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5651_CONTIG_1	19	-	1356	5	full-splice_match	RAB3A	ENST00000222256	1528	5	70	102	multi-exon	FALSE	canonical	0	0	109	2	NA	4	0	FALSE	NA	NA	0	A	coding	220	660	110	769	25	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1100_CONTIG_1	6	-	1529	8	full-splice_match	HLA-B	ENST00000412585	1547	8	12	6	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	362	1086	18	1103	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1352_CONTIG_1	5	-	1870	5	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	21	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6832_CONTIG_1	2	-	1155	5	full-splice_match	SUMO1	ENST00000392246	1536	5	53	328	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5338_CONTIG_1	4	+	1257	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	201	25	internal_fragment	FALSE	canonical	0	0	1117	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	228	1091	65	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7823_CONTIG_1	7	-	1570	9	full-splice_match	PON2	ENST00000536183	1779	9	207	2	multi-exon	FALSE	canonical	0	0	114	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6948_CONTIG_1	4	+	1840	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	2	45	multi-exon	FALSE	canonical	0	0	1354	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_436_CONTIG_1	7	-	2002	6	incomplete-splice_match	FAM3C	ENST00000359943	2508	10	456	50	5prime_fragment	FALSE	canonical	0	0	30	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6192_CONTIG_1	4	+	1739	8	incomplete-splice_match	TBC1D1	ENST00000510573	3370	18	1505	126	internal_fragment	FALSE	canonical	0	0	1256	2	NA	1	0	FALSE	NA	NA	0	A	coding	432	1296	159	1454	0	0.244	0.756	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3867_CONTIG_1	1	-	1452	4	incomplete-splice_match	CRTC2	ENST00000303569	2290	10	824	14	5prime_fragment	TRUE	canonical	0	0	348	2	NA	0	0	FALSE	NA	NA	0	A	coding	235	705	319	1023	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4652_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3248_CONTIG_1	9	-	1259	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	3	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2639_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2014_CONTIG_1	20	-	599	6	novel_not_in_catalog	HAO1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	159	2	NA	0	0	TRUE	NA	NA	0	B	coding	192	576	23	598	20	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1410_CONTIG_1	4	+	1941	15	full-splice_match	ALB	ENST00000295897	2263	15	50	272	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_801_CONTIG_1	4	+	1132	8	novel_in_catalog	ALB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1011	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	122	985	10	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5533_CONTIG_1	14	+	2260	6	full-splice_match	SERPINA5	ENST00000329597	2312	6	51	1	multi-exon	FALSE	canonical	0	0	1197	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	160	1377	25	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2898_CONTIG_1	11	+	421	4	full-splice_match	SAA1	ENST00000356524	615	4	90	104	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8266_CONTIG_1	4	+	233	3	incomplete-splice_match	FGB	ENST00000509493	1164	6	300	631	internal_fragment	FALSE	canonical	0	0	149	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1728_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4629_CONTIG_1	19	-	916	4	incomplete-splice_match	A1BG	ENST00000263100	1722	8	794	12	5prime_fragment	FALSE	canonical	0	0	178	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7771_CONTIG_1	6	+	2427	18	full-splice_match	CFB	ENST00000425368	2862	18	384	51	multi-exon	TRUE	canonical	0	0	2268	2	NA	2	0	FALSE	NA	NA	0	C	coding	764	2292	130	2421	10	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3185_CONTIG_1	3	-	1993	14	novel_not_in_catalog	MYLK	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	415	2	NA	0	0	TRUE	NA	NA	0	B	coding	522	1566	79	1644	35	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4213_CONTIG_1	4	-	1559	10	full-splice_match	FGG	ENST00000404648	1760	10	196	5	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_35_CONTIG_1	1	-	468	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	10	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8423_CONTIG_1	12	-	1962	11	incomplete-splice_match	PAH	ENST00000307000	2469	14	485	22	5prime_fragment	FALSE	canonical	0	0	123	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.53	0.47	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8254_CONTIG_1	11	+	528	4	full-splice_match	APOC3	ENST00000227667	550	4	17	5	multi-exon	FALSE	canonical	0	0	224	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	46	342	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6185_CONTIG_1	7	-	1453	3	incomplete-splice_match	CYP3A5	ENST00000481825	2857	11	1374	30	5prime_fragment	FALSE	canonical	0	0	1176	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3284_CONTIG_1	11	-	1400	12	novel_in_catalog	GANAB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	199	2	NA	0	0	FALSE	NA	NA	0	A	coding	316	948	453	1400	15	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1483_CONTIG_1	6	-	983	4	incomplete-splice_match	EEF1A1	ENST00000331523	1923	8	917	23	5prime_fragment	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	154	714	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3367_CONTIG_1	22	-	1230	10	full-splice_match	RPL3	ENST00000216146	1442	10	148	64	multi-exon	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	401	1203	27	1229	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_928_CONTIG_1	1	-	1371	8	full-splice_match	SERBP1	ENST00000370995	3482	8	0	2111	multi-exon	FALSE	canonical	0	0	399	2	NA	1	0	FALSE	NA	NA	0	A	coding	121	363	948	1310	35	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7313_CONTIG_1	19	+	1160	10	full-splice_match	QTRT1	ENST00000250237	1317	10	3	154	multi-exon	FALSE	canonical	0	0	1066	2	NA	0	0	FALSE	NA	NA	0	C	coding	384	1152	8	1159	5	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5434_CONTIG_1	4	+	1969	15	full-splice_match	ALB	ENST00000295897	2263	15	50	244	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6208_CONTIG_1	4	+	1841	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1723	2	NA	0	0	TRUE	NA	NA	0	C	coding	500	1500	40	1539	0	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4182_CONTIG_1	4	+	862	7	full-splice_match	ANXA10	ENST00000507278	894	7	16	16	multi-exon	FALSE	canonical	0	0	553	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5523_CONTIG_1	4	+	2034	15	full-splice_match	ALB	ENST00000295897	2263	15	48	181	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1561_CONTIG_1	1	-	1023	8	incomplete-splice_match	NR1I3	ENST00000428574	1117	9	-93	187	internal_fragment	FALSE	canonical	0	0	154	2	NA	0	0	FALSE	NA	NA	0	B	coding	278	834	188	1021	40	0.69	0.31	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_541_CONTIG_1	4	+	1928	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1820	2	NA	0	0	TRUE	NA	NA	0	C	coding	288	864	931	1794	15	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1371_CONTIG_1	11	-	846	4	full-splice_match	APOA1	ENST00000236850	1227	4	311	70	multi-exon	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	C	coding	263	789	56	844	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7800_CONTIG_1	4	+	2013	15	full-splice_match	ALB	ENST00000295897	2263	15	48	202	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5881_CONTIG_1	1	-	1542	7	full-splice_match	SERPINC1	ENST00000367698	1594	7	20	32	multi-exon	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	100	1491	65	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7330_CONTIG_1	5	-	1926	6	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	57	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.956	0.044	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4747_CONTIG_1	3	+	1613	11	full-splice_match	KNG1	ENST00000287611	1720	11	84	23	multi-exon	FALSE	canonical	0	0	1386	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	184	1464	20	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5333_CONTIG_1	4	+	1557	8	full-splice_match	FGB	ENST00000302068	1975	8	55	363	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3262_CONTIG_1	18	+	1332	9	full-splice_match	TTC39C	ENST00000540918	4117	9	20	2765	multi-exon	FALSE	canonical	0	0	971	2	NA	0	0	FALSE	NA	NA	0	A	coding	256	768	291	1058	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8292_CONTIG_1	4	-	1364	10	full-splice_match	FGG	ENST00000404648	1760	10	193	203	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2735_CONTIG_1	4	+	1579	8	full-splice_match	FGB	ENST00000302068	1975	8	57	339	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7916_CONTIG_1	19	-	1578	9	full-splice_match	FKBP8	ENST00000608443	1849	9	87	184	multi-exon	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	C	coding	413	1239	114	1352	10	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3381_CONTIG_1	9	-	2086	17	full-splice_match	HNRNPK	ENST00000376281	2928	17	1	841	multi-exon	TRUE	canonical	0	0	101	2	NA	2	0	FALSE	NA	NA	0	C	coding	464	1392	209	1600	30	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1572_CONTIG_1	11	+	1989	14	full-splice_match	F2	ENST00000311907	2023	14	33	1	multi-exon	FALSE	canonical	0	0	1748	2	NA	0	0	FALSE	NA	NA	0	C	coding	622	1866	24	1889	20	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5730_CONTIG_1	15	+	1268	9	incomplete-splice_match	PDIA3	ENST00000538521	2099	14	767	64	internal_fragment	FALSE	canonical	0	0	899	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3687_CONTIG_1	4	-	1495	10	full-splice_match	FGG	ENST00000404648	1760	10	193	72	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_445_CONTIG_1	9	-	1898	8	full-splice_match	PLIN2	ENST00000276914	1972	8	84	-10	multi-exon	FALSE	canonical	0	0	74	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	97	1407	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2762_CONTIG_1	14	-	985	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	478	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	312	936	48	983	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4744_CONTIG_1	1	-	1998	3	antisense	novelGene_AGO1_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	1976	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.31	0.69	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_970_CONTIG_1	2	-	1568	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	618	multi-exon	FALSE	canonical	0	0	164	2	NA	1	0	FALSE	NA	NA	0	C	coding	179	537	45	581	10	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6119_CONTIG_1	4	-	1514	10	full-splice_match	FGG	ENST00000404648	1760	10	193	53	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7918_CONTIG_1	4	+	1759	6	novel_not_in_catalog	PAICS	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1192	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.988	0.012	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7523_CONTIG_1	4	+	1642	8	full-splice_match	FGB	ENST00000302068	1975	8	55	278	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3718_CONTIG_1	15	+	498	3	full-splice_match	SERF2	ENST00000249786	1537	3	488	551	multi-exon	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_133_CONTIG_1	14	+	726	2	full-splice_match	ANG	ENST00000397990	742	2	8	8	multi-exon	FALSE	canonical	0	0	94	2	NA	1	0	FALSE	NA	NA	0	C	coding	147	441	113	553	35	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4018_CONTIG_1	1	-	1497	7	full-splice_match	MEAF6	ENST00000296214	1525	7	0	28	multi-exon	TRUE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3809_CONTIG_1	5	-	1514	2	novel_not_in_catalog	PGGT1B	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	canonical	0	0	69	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6547_CONTIG_1	16	+	1072	11	full-splice_match	GNPTG	ENST00000204679	1221	11	25	124	multi-exon	FALSE	canonical	0	0	841	2	NA	0	0	FALSE	NA	NA	0	A	coding	305	915	19	933	50	0.256	0.744	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2532_CONTIG_1	19	+	1143	4	full-splice_match	APOE	ENST00000252486	1208	4	42	23	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2829_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5195_CONTIG_1	8	-	826	7	full-splice_match	RPL7	ENST00000352983	1101	7	266	9	multi-exon	FALSE	canonical	0	0	34	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6501_CONTIG_1	1	+	1188	6	full-splice_match	HSD11B1	ENST00000367027	1319	6	2	129	multi-exon	FALSE	canonical	0	0	756	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	141	971	45	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2936_CONTIG_1	11	-	307	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	592	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	89	267	39	305	15	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2318_CONTIG_1	10	-	859	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	218	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3782_CONTIG_1	9	-	1560	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	842	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	50	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7789_CONTIG_1	16	+	1109	3	full-splice_match	HP	ENST00000566821	3024	3	1911	4	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7935_CONTIG_1	2	+	1408	9	novel_not_in_catalog	PROC	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	784	2	NA	0	0	TRUE	NA	NA	0	B	coding	272	816	556	1371	40	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_562_CONTIG_1	4	-	2209	9	full-splice_match	ADH5	ENST00000296412	2612	9	38	365	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.188	0.812	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5083_CONTIG_1	19	+	615	2	incomplete-splice_match	APOC1P1	ENST00000574565	731	3	264	-148	internal_fragment	FALSE	canonical	0	0	138	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	70	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3186_CONTIG_1	10	-	1780	17	full-splice_match	BLNK	ENST00000224337	1784	17	-40	44	multi-exon	FALSE	canonical	0	0	229	2	NA	1	0	FALSE	NA	NA	0	C	coding	456	1368	183	1550	30	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8489_CONTIG_1	4	+	790	4	full-splice_match	OSTC	ENST00000361564	1077	4	53	234	multi-exon	FALSE	canonical	0	0	450	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2549_CONTIG_1	18	+	611	4	full-splice_match	TTR	ENST00000237014	957	4	151	195	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7102_CONTIG_1	17	+	1319	4	genic_intron	novelGene_205	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1103	2	NA	5	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	70	0.376	0.624	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1295_CONTIG_1	9	-	1601	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	801	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3707_CONTIG_1	19	-	1744	16	incomplete-splice_match	C3	ENST00000245907	5263	41	3374	145	5prime_fragment	FALSE	canonical	0	0	109	2	NA	0	0	FALSE	NA	NA	0	B	coding	535	1605	104	1708	20	0.714	0.286	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6044_CONTIG_1	16	-	2082	2	full-splice_match	IGFALS	ENST00000215539	2116	2	34	0	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	coding	605	1815	78	1892	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2899_CONTIG_1	12	+	1754	11	novel_not_in_catalog	C1S	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1414	2	NA	1	1	TRUE	NA	NA	0	B	coding	412	1236	239	1474	35	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7438_CONTIG_1	4	+	1611	12	full-splice_match	TDO2	ENST00000536354	1701	12	-3	93	multi-exon	FALSE	canonical	0	0	1134	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6817_CONTIG_1	16	-	653	5	full-splice_match	NDUFAB1	ENST00000007516	717	5	52	12	multi-exon	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	87	482	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1060_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1076_CONTIG_1	19	+	870	4	full-splice_match	FTL	ENST00000331825	878	4	8	0	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8411_CONTIG_1	6	+	1144	8	novel_in_catalog	ACAT2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	971	2	NA	0	0	FALSE	NA	NA	0	A	coding	308	924	216	1139	35	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8162_CONTIG_1	10	-	1919	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	0	4	multi-exon	FALSE	canonical	0	0	263	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6781_CONTIG_1	4	-	1943	2	full-splice_match	C4orf3	ENST00000504110	667	2	364	-1640	multi-exon	FALSE	canonical	0	0	222	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_166_CONTIG_1	12	-	1320	4	incomplete-splice_match	SCAF11	ENST00000549162	3934	9	2431	183	internal_fragment	FALSE	canonical	0	0	670	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.528	0.472	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_828_CONTIG_1	19	+	864	4	full-splice_match	FTL	ENST00000331825	878	4	8	6	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6918_CONTIG_1	13	-	748	6	incomplete-splice_match	GRTP1	ENST00000375431	1384	8	18	618	internal_fragment	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	A	coding	230	690	58	747	5	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4713_CONTIG_1	7	-	742	6	novel_in_catalog	POLD2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	A	coding	217	651	91	741	10	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5723_CONTIG_1	2	+	811	8	incomplete-splice_match	UBXN4	ENST00000272638	4006	13	193	3002	3prime_fragment	FALSE	canonical	0	0	775	2	NA	0	0	FALSE	NA	NA	0	B	coding	196	588	224	811	45	0.712	0.288	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4664_CONTIG_1	3	+	1566	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	6	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	20	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5317_CONTIG_1	14	+	1538	5	full-splice_match	SERPINA3	ENST00000393080	1581	5	7	36	multi-exon	FALSE	canonical	0	0	1129	2	NA	0	0	FALSE	NA	NA	0	C	coding	420	1260	71	1330	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6642_CONTIG_1	5	-	1093	9	novel_not_in_catalog	LMAN2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	19	2	NA	0	0	TRUE	NA	NA	0	C	coding	315	945	19	963	15	0.95	0.05	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7934_CONTIG_1	6	+	762	6	full-splice_match	APOM	ENST00000375916	1184	6	423	-1	multi-exon	FALSE	canonical	0	0	614	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	74	637	5	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7822_CONTIG_1	4	-	1319	6	full-splice_match	UGT2B4	ENST00000305107	2103	6	728	56	multi-exon	FALSE	canonical	0	0	40	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8551_CONTIG_1	9	-	1705	8	full-splice_match	PLIN2	ENST00000276914	1972	8	89	178	multi-exon	FALSE	canonical	0	0	69	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	92	1402	50	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_342_CONTIG_1	1	+	909	2	full-splice_match	APCS	ENST00000255040	926	2	1	16	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6990_CONTIG_1	4	+	2031	15	full-splice_match	ALB	ENST00000295897	2263	15	51	181	multi-exon	FALSE	canonical	0	0	1891	2	NA	5	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	65	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5544_CONTIG_1	9	-	1229	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	33	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	55	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8605_CONTIG_1	3	+	900	3	full-splice_match	ITIH1	ENST00000494705	680	3	-300	80	multi-exon	FALSE	canonical	0	0	700	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8526_CONTIG_1	X	+	1088	9	incomplete-splice_match	MAOA	ENST00000338702	4015	15	84	2843	3prime_fragment	FALSE	canonical	0	0	994	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	40	1086	20	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_517_CONTIG_1	17	+	970	2	intergenic	novelGene_90	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	195	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6305_CONTIG_1	14	-	1015	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	442	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	42	1013	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1113_CONTIG_1	X	+	746	7	full-splice_match	RPL10	ENST00000436473	657	7	10	-99	multi-exon	FALSE	canonical	0	0	537	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	46	687	15	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1320_CONTIG_1	15	+	512	4	full-splice_match	RPLP1	ENST00000260379	919	4	35	372	multi-exon	FALSE	canonical	0	0	395	2	NA	0	0	FALSE	NA	NA	0	A	coding	114	342	131	472	5	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5314_CONTIG_1	X	+	1527	2	full-splice_match	GJB1	ENST00000374022	1904	2	19	358	multi-exon	FALSE	canonical	0	0	60	2	NA	1	0	FALSE	NA	NA	0	C	coding	283	849	77	925	30	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4781_CONTIG_1	19	-	1667	8	full-splice_match	A1BG	ENST00000263100	1722	8	36	19	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	coding	495	1485	27	1511	25	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5102_CONTIG_1	19	+	843	4	full-splice_match	FTL	ENST00000331825	878	4	8	27	multi-exon	FALSE	canonical	0	0	574	2	NA	1	0	FALSE	NA	NA	0	C	coding	175	525	200	724	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8528_CONTIG_1	18	+	873	4	full-splice_match	MYL12A	ENST00000217652	1229	4	263	93	multi-exon	FALSE	canonical	0	0	475	2	NA	1	0	FALSE	NA	NA	0	C	coding	171	513	133	645	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4368_CONTIG_1	3	+	1572	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	0	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5950_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	48	159	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6750_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8460_CONTIG_1	16	+	983	3	incomplete-splice_match	HP	ENST00000570083	1270	5	236	51	internal_fragment	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	183	866	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8019_CONTIG_1	11	-	1562	10	full-splice_match	HPX	ENST00000265983	1652	10	77	13	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2661_CONTIG_1	4	+	296	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	1184	3	internal_fragment	FALSE	canonical	0	0	134	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4269_CONTIG_1	17	-	1172	8	full-splice_match	APOH	ENST00000205948	1176	8	3	1	multi-exon	FALSE	canonical	0	0	99	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3134_CONTIG_1	20	-	1489	7	full-splice_match	ARFRP1	ENST00000359715	2491	7	607	395	multi-exon	TRUE	canonical	0	0	53	2	NA	1	0	FALSE	NA	NA	0	A	coding	154	462	102	563	10	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4604_CONTIG_1	9	-	485	4	full-splice_match	PTGR1	ENST00000374313	1061	4	169	407	multi-exon	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6328_CONTIG_1	7	-	1000	4	novel_not_in_catalog	AZGP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	87	2	NA	2	0	TRUE	NA	NA	0	C	coding	272	816	21	836	35	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5782_CONTIG_1	16	+	1119	5	novel_not_in_catalog	HPR	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	375	2	NA	0	0	TRUE	NA	NA	0	C	coding	209	627	358	984	45	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7564_CONTIG_1	11	-	576	3	incomplete-splice_match	FTH1	ENST00000534180	983	4	383	24	5prime_fragment	FALSE	canonical	0	0	148	2	NA	0	0	FALSE	NA	NA	0	C	coding	113	339	98	436	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4316_CONTIG_1	1	-	458	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	20	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_98_CONTIG_1	16	+	283	4	incomplete-splice_match	HP	ENST00000398131	1252	5	53	916	internal_fragment	FALSE	canonical	0	0	256	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2095_CONTIG_1	2	-	2000	8	novel_not_in_catalog	COBLL1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1061	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6466_CONTIG_1	2	+	411	3	full-splice_match	TMSB10	ENST00000233143	492	3	30	51	multi-exon	FALSE	canonical	0	0	179	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6015_CONTIG_1	4	-	544	4	incomplete-splice_match	FGG	ENST00000405164	1539	10	828	167	5prime_fragment	FALSE	canonical	0	0	81	2	NA	1	0	FALSE	NA	NA	0	C	coding	148	444	98	541	45	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_908_CONTIG_1	2	+	1337	8	novel_not_in_catalog	SPP2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	639	2	NA	2	0	TRUE	NA	NA	0	C	coding	130	390	77	466	40	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1555_CONTIG_1	17	-	1347	11	full-splice_match	SMARCE1	ENST00000348513	5840	11	656	3837	multi-exon	FALSE	canonical	0	0	80	2	NA	0	0	FALSE	NA	NA	0	A	coding	407	1221	126	1346	55	0.24	0.76	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6212_CONTIG_1	4	+	1997	15	full-splice_match	ALB	ENST00000295897	2263	15	50	216	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4848_CONTIG_1	4	-	1409	4	intergenic	novelGene_295	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_356_CONTIG_1	1	+	340	4	full-splice_match	RPS27	ENST00000368567	350	4	3	7	multi-exon	FALSE	canonical	0	0	261	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6499_CONTIG_1	20	+	2215	9	novel_in_catalog	LBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	956	2	NA	1	0	FALSE	NA	NA	0	C	coding	356	1068	36	1103	55	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2894_CONTIG_1	11	-	846	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	53	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	0	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6767_CONTIG_1	18	+	613	4	full-splice_match	TTR	ENST00000237014	957	4	151	193	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2333_CONTIG_1	3	+	725	5	incomplete-splice_match	TF	ENST00000264998	2143	16	1412	6	internal_fragment	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	181	543	15	557	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6586_CONTIG_1	5	-	287	2	incomplete-splice_match	C9	ENST00000263408	2713	11	970	1456	internal_fragment	FALSE	canonical	0	0	237	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.468	0.532	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5161_CONTIG_1	19	-	763	6	novel_not_in_catalog	C19orf10	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	182	2	NA	0	0	TRUE	NA	NA	0	C	coding	144	432	9	440	25	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7948_CONTIG_1	5	-	1972	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	84	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.302	0.698	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5831_CONTIG_1	4	-	1554	10	full-splice_match	FGG	ENST00000404648	1760	10	196	10	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2958_CONTIG_1	X	+	742	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1429	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7347_CONTIG_1	19	+	863	4	full-splice_match	FTL	ENST00000331825	878	4	8	7	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7072_CONTIG_1	12	+	1400	4	full-splice_match	PEBP1	ENST00000261313	1697	4	266	31	multi-exon	FALSE	canonical	0	0	432	2	NA	1	0	FALSE	NA	NA	0	C	coding	187	561	87	647	55	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6010_CONTIG_1	19	-	646	4	incomplete-splice_match	FKBP8	ENST00000222308	1710	9	-49	1113	internal_fragment	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	C	coding	177	531	114	644	20	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1874_CONTIG_1	12	+	1722	5	full-splice_match	OAS1	ENST00000452357	1990	5	145	123	multi-exon	FALSE	canonical	0	0	929	2	NA	0	0	FALSE	NA	NA	0	A	coding	364	1092	46	1137	30	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8252_CONTIG_1	10	+	524	7	novel_not_in_catalog	RPS24	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	454	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	40	432	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5202_CONTIG_1	10	-	1400	7	full-splice_match	PDLIM1	ENST00000329399	1452	7	21	31	multi-exon	FALSE	canonical	0	0	184	2	NA	0	0	FALSE	NA	NA	0	C	coding	329	987	89	1075	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5156_CONTIG_1	4	+	1835	8	full-splice_match	FGB	ENST00000302068	1975	8	61	79	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8078_CONTIG_1	12	+	1169	2	genic_intron	novelGene_672	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.134	0.866	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6369_CONTIG_1	18	-	682	5	full-splice_match	CYB5A	ENST00000340533	834	5	117	35	multi-exon	FALSE	canonical	0	0	153	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	25	426	45	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7755_CONTIG_1	16	-	955	2	antisense	novelGene_MT2A_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	45	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.436	0.564	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6323_CONTIG_1	6	+	1223	6	full-splice_match	IYD	ENST00000229447	7513	6	120	6170	multi-exon	FALSE	canonical	0	0	819	2	NA	0	0	FALSE	NA	NA	0	C	coding	293	879	21	899	35	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6863_CONTIG_1	11	+	919	4	full-splice_match	ARL14EP	ENST00000282032	2430	4	96	1415	multi-exon	FALSE	canonical	0	0	673	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.22	0.78	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2710_CONTIG_1	9	+	755	6	full-splice_match	ORM1	ENST00000259396	802	6	45	2	multi-exon	FALSE	canonical	0	0	573	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	34	636	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3290_CONTIG_1	17	-	1118	5	novel_not_in_catalog	ACTG1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	66	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6786_CONTIG_1	16	+	1075	3	full-splice_match	HP	ENST00000566821	3024	3	1939	10	multi-exon	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	235	918	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2199_CONTIG_1	12	+	1813	7	incomplete-splice_match	C1S	ENST00000402681	2522	11	738	-29	internal_fragment	FALSE	canonical	0	0	678	2	NA	0	0	FALSE	NA	NA	0	B	coding	397	1191	282	1472	25	0.634	0.366	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4185_CONTIG_1	15	+	1137	11	genic_intron	novelGene_452	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	731	2	NA	17	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2609_CONTIG_1	1	-	349	3	full-splice_match	APOA2	ENST00000463273	469	3	86	34	multi-exon	FALSE	canonical	0	0	150	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3729_CONTIG_1	2	+	2537	17	full-splice_match	EPB41L5	ENST00000331393	1777	17	-45	-715	multi-exon	FALSE	canonical	0	0	1482	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.386	0.614	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2952_CONTIG_1	10	+	1140	8	novel_not_in_catalog	CYP2E1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	984	2	NA	1	0	TRUE	NA	NA	0	C	coding	253	759	34	792	50	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5684_CONTIG_1	10	+	1856	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	4	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3375_CONTIG_1	10	+	1635	9	full-splice_match	CYP2C9	ENST00000260682	1847	9	-13	225	multi-exon	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	C	coding	490	1470	26	1495	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5768_CONTIG_1	19	+	509	6	full-splice_match	RPS19	ENST00000598742	2359	6	337	1513	multi-exon	FALSE	canonical	0	0	446	2	NA	0	0	FALSE	NA	NA	0	C	coding	145	435	36	470	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5542_CONTIG_1	4	-	1513	10	full-splice_match	FGG	ENST00000404648	1760	10	193	54	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7770_CONTIG_1	4	+	1824	13	incomplete-splice_match	ALB	ENST00000295897	2263	15	278	161	internal_fragment	FALSE	canonical	0	0	1664	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	142	1638	35	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5019_CONTIG_1	4	-	2014	2	full-splice_match	HELQ	ENST00000515482	574	2	10	-1450	multi-exon	FALSE	canonical	0	0	338	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6962_CONTIG_1	15	-	1257	4	incomplete-splice_match	GATM	ENST00000396659	2597	9	1174	166	5prime_fragment	FALSE	canonical	0	0	144	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_623_CONTIG_1	4	+	2008	15	full-splice_match	ALB	ENST00000295897	2263	15	50	205	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6988_CONTIG_1	8	-	950	2	genic_intron	novelGene_733	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	602	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	20	0.468	0.532	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7778_CONTIG_1	4	+	2018	15	full-splice_match	ALB	ENST00000295897	2263	15	50	195	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2857_CONTIG_1	14	-	380	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	627	443	internal_fragment	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	C	coding	81	243	137	379	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2982_CONTIG_1	5	-	1874	4	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	337	32	5prime_fragment	FALSE	canonical	0	0	123	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4929_CONTIG_1	13	+	1004	8	novel_not_in_catalog	ZMYM2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	893	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8690_CONTIG_1	16	+	1119	3	full-splice_match	HP	ENST00000566821	3024	3	1900	5	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3389_CONTIG_1	6	+	1800	5	novel_in_catalog	CFB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1287	2	NA	0	0	FALSE	NA	NA	0	C	coding	239	717	726	1442	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1106_CONTIG_1	19	+	1614	10	full-splice_match	HMG20B	ENST00000333651	1596	10	-23	5	multi-exon	FALSE	canonical	0	0	1039	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	99	1049	15	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3963_CONTIG_1	4	+	2056	15	full-splice_match	ALB	ENST00000295897	2263	15	50	157	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_972_CONTIG_1	4	+	1182	3	full-splice_match	GBA3	ENST00000503442	1232	3	12	38	multi-exon	FALSE	canonical	0	0	365	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5138_CONTIG_1	1	+	1646	10	novel_in_catalog	FGGY	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1461	2	NA	2	0	FALSE	NA	NA	0	C	coding	220	660	505	1164	35	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3376_CONTIG_1	11	-	813	5	incomplete-splice_match	HPX	ENST00000265983	1652	10	788	51	5prime_fragment	FALSE	canonical	0	0	16	2	NA	0	0	FALSE	NA	NA	0	C	coding	208	624	76	699	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2819_CONTIG_1	4	+	1542	8	full-splice_match	FGB	ENST00000302068	1975	8	61	372	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3585_CONTIG_1	4	+	1330	10	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	598	3prime_fragment	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	429	1287	42	1328	30	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1914_CONTIG_1	6	+	725	6	full-splice_match	APOM	ENST00000375916	1184	6	456	3	multi-exon	FALSE	canonical	0	0	581	2	NA	0	0	FALSE	NA	NA	0	C	coding	188	564	41	604	10	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8578_CONTIG_1	5	-	1221	6	full-splice_match	CMBL	ENST00000296658	2335	6	185	929	multi-exon	FALSE	canonical	0	0	217	2	NA	1	0	FALSE	NA	NA	0	C	coding	245	735	237	971	25	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1501_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	50	163	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8445_CONTIG_1	4	+	1632	8	full-splice_match	FGB	ENST00000302068	1975	8	56	287	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4130_CONTIG_1	4	-	949	8	incomplete-splice_match	YTHDC1	ENST00000355665	3244	16	1641	654	5prime_fragment	FALSE	canonical	0	0	75	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.246	0.754	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1854_CONTIG_1	4	+	2013	15	full-splice_match	ALB	ENST00000295897	2263	15	50	200	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5103_CONTIG_1	9	-	1253	10	full-splice_match	AMBP	ENST00000265132	1434	10	176	5	multi-exon	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	88	1143	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2703_CONTIG_1	2	-	1191	5	incomplete-splice_match	FN1	ENST00000456923	3720	21	2789	-260	5prime_fragment	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	45	0.532	0.468	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6389_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1676_CONTIG_1	11	+	838	4	full-splice_match	LDHA	ENST00000538451	1345	4	378	129	multi-exon	FALSE	canonical	0	0	343	2	NA	0	0	FALSE	NA	NA	0	C	coding	159	477	29	505	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5644_CONTIG_1	9	-	1251	10	full-splice_match	AMBP	ENST00000265132	1434	10	171	12	multi-exon	FALSE	canonical	0	0	209	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	93	1148	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1585_CONTIG_1	6	-	791	5	incomplete-splice_match	NELFE	ENST00000375425	1405	11	600	14	5prime_fragment	TRUE	canonical	0	0	332	2	NA	0	0	FALSE	NA	NA	0	A	coding	110	330	401	730	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6419_CONTIG_1	12	+	536	2	novel_in_catalog	ALDH2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1337_CONTIG_1	4	+	1988	15	full-splice_match	ALB	ENST00000295897	2263	15	50	225	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8706_CONTIG_1	4	+	2058	15	full-splice_match	ALB	ENST00000295897	2263	15	49	156	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1124_CONTIG_1	18	+	590	4	full-splice_match	TTR	ENST00000237014	957	4	151	216	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2188_CONTIG_1	1	+	1953	9	novel_in_catalog	CTPS1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	964	2	NA	0	0	FALSE	NA	NA	0	A	coding	352	1056	93	1148	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_77_CONTIG_1	2	+	661	6	incomplete-splice_match	UBXN4	ENST00000272638	4006	13	252	3093	3prime_fragment	FALSE	canonical	0	0	567	2	NA	0	0	FALSE	NA	NA	0	B	coding	165	495	165	659	10	0.57	0.43	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_258_CONTIG_1	19	-	352	3	full-splice_match	UQCR11	ENST00000591899	1315	3	22	941	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5896_CONTIG_1	6	-	1508	8	full-splice_match	HLA-C	ENST00000376228	1536	8	-4	32	multi-exon	FALSE	canonical	0	0	92	2	NA	2	0	FALSE	NA	NA	0	C	coding	366	1098	20	1117	50	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_307_CONTIG_1	6	+	2009	16	novel_in_catalog	CFB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1843	2	NA	0	0	FALSE	NA	NA	0	C	coding	542	1626	371	1996	15	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3071_CONTIG_1	3	+	1132	5	novel_not_in_catalog	HRG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	535	2	NA	0	0	TRUE	NA	NA	0	C	coding	194	582	19	600	50	0.952	0.048	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7641_CONTIG_1	4	+	1577	8	full-splice_match	FGB	ENST00000302068	1975	8	59	339	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6051_CONTIG_1	7	+	1330	7	incomplete-splice_match	POR	ENST00000439269	1858	10	458	70	internal_fragment	FALSE	canonical	0	0	904	2	NA	0	0	FALSE	NA	NA	0	C	coding	332	996	51	1046	10	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_479_CONTIG_1	3	+	965	7	full-splice_match	RPSA	ENST00000301821	1171	7	31	175	multi-exon	FALSE	canonical	0	0	871	2	NA	0	0	FALSE	NA	NA	0	A	coding	295	885	79	963	15	0.224	0.776	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3599_CONTIG_1	11	-	873	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	26	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8729_CONTIG_1	4	+	2057	15	full-splice_match	ALB	ENST00000295897	2263	15	50	156	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3689_CONTIG_1	11	-	1057	5	full-splice_match	LAMTOR1	ENST00000278671	1179	5	120	2	multi-exon	FALSE	canonical	0	0	85	2	NA	0	0	FALSE	NA	NA	0	C	coding	161	483	44	526	5	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3627_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	41	167	multi-exon	FALSE	canonical	0	0	1901	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	49	1875	45	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5889_CONTIG_1	4	+	1521	12	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	405	3prime_fragment	FALSE	canonical	0	0	1467	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	40	1521	35	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3498_CONTIG_1	4	+	2008	15	full-splice_match	ALB	ENST00000295897	2263	15	49	206	multi-exon	FALSE	canonical	0	0	1893	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	0	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3297_CONTIG_1	9	+	745	6	full-splice_match	ORM1	ENST00000259396	802	6	42	15	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2804_CONTIG_1	1	-	333	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	145	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_112_CONTIG_1	4	+	334	3	incomplete-splice_match	ALB	ENST00000415165	1483	11	286	863	internal_fragment	FALSE	canonical	0	0	237	2	NA	0	0	FALSE	NA	NA	0	C	coding	64	192	143	334	20	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2391_CONTIG_1	22	-	2037	12	full-splice_match	RTCB	ENST00000216038	2027	12	-10	0	multi-exon	FALSE	canonical	0	0	202	2	NA	2	0	FALSE	NA	NA	0	A	coding	505	1515	110	1624	0	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1809_CONTIG_1	X	-	1137	5	incomplete-splice_match	MAOB	ENST00000378069	2566	15	1270	159	5prime_fragment	FALSE	canonical	0	0	15	2	NA	0	0	FALSE	NA	NA	0	A	coding	85	255	184	438	20	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6975_CONTIG_1	2	-	1202	4	incomplete-splice_match	HSPD1	ENST00000345042	2299	12	1086	11	5prime_fragment	FALSE	canonical	0	0	246	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.448	0.552	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3551_CONTIG_1	11	-	871	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	28	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5252_CONTIG_1	11	+	937	3	full-splice_match	NNMT	ENST00000299964	1610	3	627	46	multi-exon	FALSE	canonical	0	0	467	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	106	897	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5789_CONTIG_1	19	+	695	4	incomplete-splice_match	LDLR	ENST00000545707	2429	16	1791	-57	internal_fragment	FALSE	canonical	0	0	308	2	NA	1	0	FALSE	NA	NA	0	A	coding	94	282	60	341	45	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5517_CONTIG_1	4	+	1996	15	full-splice_match	ALB	ENST00000295897	2263	15	50	217	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6420_CONTIG_1	3	+	1550	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	22	multi-exon	FALSE	canonical	0	0	839	2	NA	1	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	40	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2853_CONTIG_1	4	-	945	7	full-splice_match	HSD17B13	ENST00000328546	2397	7	24	1428	multi-exon	FALSE	canonical	0	0	251	2	NA	0	0	FALSE	NA	NA	0	C	coding	300	900	42	941	40	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6021_CONTIG_1	13	-	1520	3	full-splice_match	TSC22D1	ENST00000261489	1749	3	29	200	multi-exon	FALSE	canonical	0	0	313	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	219	620	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8607_CONTIG_1	4	+	2017	15	full-splice_match	ALB	ENST00000295897	2263	15	50	196	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8039_CONTIG_1	4	+	2005	15	full-splice_match	ALB	ENST00000295897	2263	15	50	208	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1885_CONTIG_1	5	-	1066	8	full-splice_match	GNB2L1	ENST00000512805	1403	8	303	34	multi-exon	FALSE	canonical	0	0	215	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	107	1057	40	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3387_CONTIG_1	2	-	1434	7	incomplete-splice_match	FN1	ENST00000456923	3720	21	2568	-282	5prime_fragment	FALSE	canonical	0	0	24	2	NA	0	0	FALSE	NA	NA	0	B	coding	163	489	253	741	30	0.662	0.338	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6533_CONTIG_1	4	+	1517	11	full-splice_match	ALB	ENST00000511370	1519	11	34	-32	multi-exon	FALSE	canonical	0	0	1352	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	463	1326	25	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5739_CONTIG_1	1	-	1240	7	full-splice_match	TMCO1	ENST00000392129	1946	7	40	666	multi-exon	FALSE	canonical	0	0	181	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_546_CONTIG_1	7	+	905	2	full-splice_match	GNG11	ENST00000248564	3055	2	50	2100	multi-exon	FALSE	canonical	0	0	485	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2171_CONTIG_1	4	+	2050	15	full-splice_match	ALB	ENST00000295897	2263	15	50	163	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4386_CONTIG_1	4	+	1971	15	full-splice_match	ALB	ENST00000295897	2263	15	50	242	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7748_CONTIG_1	11	+	871	6	full-splice_match	PRDX5	ENST00000265462	893	6	9	13	multi-exon	FALSE	canonical	0	0	658	2	NA	0	0	FALSE	NA	NA	0	A	coding	162	486	276	761	5	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4175_CONTIG_1	19	+	709	4	full-splice_match	APOE	ENST00000434152	864	4	-21	176	multi-exon	FALSE	canonical	0	0	392	2	NA	0	0	FALSE	NA	NA	0	C	coding	210	630	79	708	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7111_CONTIG_1	4	+	520	4	incomplete-splice_match	ALB	ENST00000505649	1509	11	325	664	internal_fragment	FALSE	canonical	0	0	419	2	NA	0	0	FALSE	NA	NA	0	C	coding	65	195	325	519	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4133_CONTIG_1	4	-	525	5	full-splice_match	FGG	ENST00000464532	703	5	0	178	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	159	477	48	524	35	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8217_CONTIG_1	4	+	1470	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1159	2	NA	2	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2392_CONTIG_1	5	+	1396	5	full-splice_match	TMED9	ENST00000332598	1473	5	41	36	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	A	coding	235	705	17	721	65	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2600_CONTIG_1	12	-	1027	7	novel_not_in_catalog	MLF2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	143	2	NA	0	0	TRUE	NA	NA	0	C	coding	127	381	172	552	20	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3924_CONTIG_1	2	+	1756	9	novel_in_catalog	PROC	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	874	2	NA	0	0	FALSE	NA	NA	0	B	coding	461	1383	79	1461	25	0.656	0.344	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2745_CONTIG_1	10	-	864	3	incomplete-splice_match	KLF6	ENST00000497571	4656	4	578	3214	5prime_fragment	FALSE	canonical	0	0	359	2	NA	0	0	FALSE	NA	NA	0	C	coding	5	15	518	532	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7040_CONTIG_1	9	-	919	9	incomplete-splice_match	AMBP	ENST00000265132	1434	10	510	5	5prime_fragment	FALSE	canonical	0	0	13	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	105	809	20	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6263_CONTIG_1	X	-	821	5	incomplete-splice_match	HSD17B10	ENST00000168216	960	6	121	18	5prime_fragment	FALSE	canonical	0	0	99	2	NA	0	0	FALSE	NA	NA	0	A	coding	139	417	274	690	15	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7741_CONTIG_1	3	+	1393	8	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1208	2	NA	1	0	TRUE	NA	NA	0	C	coding	367	1101	81	1181	15	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6243_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	50	171	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7556_CONTIG_1	2	+	1155	3	full-splice_match	ID2	ENST00000396290	1362	3	73	134	multi-exon	FALSE	canonical	0	0	522	2	NA	1	0	FALSE	NA	NA	0	C	coding	134	402	111	512	15	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8298_CONTIG_1	13	+	577	6	full-splice_match	POMP	ENST00000380842	1330	6	22	731	multi-exon	FALSE	canonical	0	0	417	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6842_CONTIG_1	12	+	1239	9	full-splice_match	GAPDH	ENST00000229239	1875	9	590	46	multi-exon	FALSE	canonical	0	0	1014	2	NA	1	0	FALSE	NA	NA	0	C	coding	335	1005	77	1081	20	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2707_CONTIG_1	11	-	1572	10	full-splice_match	HPX	ENST00000265983	1652	10	77	3	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3230_CONTIG_1	4	-	1542	12	novel_in_catalog	GC	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	116	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3158_CONTIG_1	18	-	1841	12	full-splice_match	ATP5A1	ENST00000398752	1916	12	68	7	multi-exon	FALSE	canonical	0	0	114	2	NA	0	0	FALSE	NA	NA	0	C	coding	553	1659	55	1713	25	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4445_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1015_CONTIG_1	11	-	796	3	full-splice_match	APOA1	ENST00000375323	1088	3	211	81	multi-exon	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	coding	260	780	17	796	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_865_CONTIG_1	12	-	603	2	full-splice_match	UBC	ENST00000339647	2688	2	497	1588	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	178	534	68	601	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3515_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8502_CONTIG_1	4	-	1790	9	full-splice_match	ADH1B	ENST00000394887	4059	9	-2	2271	multi-exon	FALSE	canonical	0	0	88	2	NA	1	0	FALSE	NA	NA	0	C	coding	375	1125	71	1195	25	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1623_CONTIG_1	10	-	954	4	incomplete-splice_match	GOT1	ENST00000370508	1947	9	721	272	5prime_fragment	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	B	coding	126	378	169	546	30	0.508	0.492	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1415_CONTIG_1	12	+	974	5	incomplete-splice_match	KRT18	ENST00000388835	1562	7	157	431	3prime_fragment	FALSE	canonical	0	0	875	2	NA	0	0	FALSE	NA	NA	0	C	coding	307	921	54	974	25	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6233_CONTIG_1	15	-	839	2	genic_intron	novelGene_468	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	336	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8144_CONTIG_1	6	-	1668	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	557	78	multi-exon	FALSE	canonical	0	0	32	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	63	1448	40	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7482_CONTIG_1	18	-	843	7	full-splice_match	RPL17	ENST00000418495	927	7	57	27	multi-exon	FALSE	canonical	0	0	22	2	NA	0	0	FALSE	NA	NA	0	C	coding	184	552	285	836	55	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3113_CONTIG_1	4	-	2176	5	full-splice_match	FGA	ENST00000403106	2248	5	22	50	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	40	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7291_CONTIG_1	14	-	996	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	461	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	318	954	42	995	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3764_CONTIG_1	22	-	1994	10	full-splice_match	NIPSNAP1	ENST00000216121	2237	10	220	23	multi-exon	FALSE	canonical	0	0	133	2	NA	0	0	FALSE	NA	NA	0	A	coding	284	852	36	887	50	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4248_CONTIG_1	16	+	843	8	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	646	2	NA	0	0	TRUE	NA	NA	0	C	coding	148	444	28	471	10	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8546_CONTIG_1	11	+	1021	8	incomplete-splice_match	SF3B2	ENST00000322535	2903	22	1858	24	internal_fragment	FALSE	canonical	0	0	807	2	NA	1	1	FALSE	NA	NA	0	A	coding	277	831	46	876	50	0.3	0.7	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3674_CONTIG_1	9	+	1525	15	full-splice_match	ASS1	ENST00000352480	1564	15	33	6	multi-exon	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	40	1275	10	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4232_CONTIG_1	6	-	2023	2	novel_not_in_catalog	ZBTB2	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	canonical	0	0	1348	2	NA	1	0	TRUE	NA	NA	0	B	coding	323	969	242	1210	45	0.956	0.044	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3850_CONTIG_1	3	+	2299	17	full-splice_match	TF	ENST00000402696	2968	17	437	232	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6112_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7925_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4161_CONTIG_1	10	+	986	2	incomplete-splice_match	GHITM	ENST00000372134	2128	9	994	148	internal_fragment	FALSE	canonical	0	0	152	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1863_CONTIG_1	3	+	1395	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	177	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	25	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5511_CONTIG_1	10	+	1404	8	incomplete-splice_match	CYP2E1	ENST00000252945	1667	9	264	-1	internal_fragment	FALSE	canonical	0	0	1066	2	NA	0	0	FALSE	NA	NA	0	C	coding	414	1242	7	1248	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6942_CONTIG_1	9	-	1264	10	full-splice_match	AMBP	ENST00000265132	1434	10	170	0	multi-exon	FALSE	canonical	0	0	210	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	94	1149	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5851_CONTIG_1	10	+	1691	10	incomplete-splice_match	ITIH2	ENST00000379587	2848	20	1305	-148	internal_fragment	FALSE	canonical	0	0	1390	2	NA	0	0	FALSE	NA	NA	0	B	coding	494	1482	54	1535	60	0.686	0.314	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5154_CONTIG_1	5	-	1042	2	genic_intron	novelGene_228	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	82	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	5	0.492	0.508	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5165_CONTIG_1	4	+	2034	15	full-splice_match	ALB	ENST00000295897	2263	15	48	181	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8284_CONTIG_1	5	+	1131	3	incomplete-splice_match	ERAP2	ENST00000379904	3219	18	2566	-478	internal_fragment	FALSE	canonical	0	0	182	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3653_CONTIG_1	4	+	1206	5	incomplete-splice_match	FGB	ENST00000509493	1164	6	269	-311	internal_fragment	FALSE	canonical	0	0	592	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3126_CONTIG_1	15	-	970	2	genic_intron	novelGene_496	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	281	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4097_CONTIG_1	4	+	218	2	full-splice_match	ALB	ENST00000504043	422	2	-85	289	multi-exon	FALSE	canonical	0	0	146	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5872_CONTIG_1	12	+	1708	12	novel_not_in_catalog	DDX55	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1516	2	NA	0	0	FALSE	NA	NA	0	A	coding	264	792	553	1344	55	0.61	0.39	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4388_CONTIG_1	1	-	469	4	full-splice_match	APOA2	ENST00000367990	474	4	0	5	multi-exon	FALSE	canonical	0	0	34	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	59	358	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3830_CONTIG_1	16	+	1201	3	novel_in_catalog	DHODH	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	233	2	NA	0	0	FALSE	NA	NA	0	B	coding	161	483	44	526	90	0.51	0.49	NEG	TRUE	Artifact
SAMPLE_1_MOLECULE_6816_CONTIG_1	16	+	392	3	full-splice_match	MT1E	ENST00000306061	704	3	308	4	multi-exon	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6455_CONTIG_1	3	+	442	4	incomplete-splice_match	PDIA5	ENST00000489923	1651	16	1102	107	internal_fragment	FALSE	canonical	0	0	324	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	103	402	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2156_CONTIG_1	1	+	723	3	full-splice_match	SH3BGRL3	ENST00000270792	1655	3	901	31	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	93	279	80	358	40	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1860_CONTIG_1	14	-	1014	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	449	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	322	966	48	1013	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1138_CONTIG_1	3	-	1562	5	novel_not_in_catalog	KPNA4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	224	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7321_CONTIG_1	18	+	603	4	full-splice_match	TTR	ENST00000237014	957	4	151	203	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3125_CONTIG_1	6	-	1704	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	43	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3994_CONTIG_1	11	+	2080	5	full-splice_match	SC5D	ENST00000264027	2456	5	310	66	multi-exon	FALSE	canonical	0	0	508	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5529_CONTIG_1	3	-	1386	9	novel_not_in_catalog	ALG3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	219	2	NA	1	0	TRUE	NA	NA	0	A	coding	423	1269	24	1292	25	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2757_CONTIG_1	X	-	1877	12	full-splice_match	RBBP7	ENST00000380087	2333	12	141	315	multi-exon	FALSE	canonical	0	0	236	2	NA	0	0	FALSE	NA	NA	0	C	coding	425	1275	221	1495	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8634_CONTIG_1	19	-	1673	10	full-splice_match	SLC27A5	ENST00000263093	2361	10	672	16	multi-exon	FALSE	canonical	0	0	126	2	NA	0	0	FALSE	NA	NA	0	C	coding	501	1503	6	1508	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4060_CONTIG_1	3	+	1572	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	0	multi-exon	FALSE	canonical	0	0	839	2	NA	1	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4568_CONTIG_1	6	-	1012	3	novel_in_catalog	HLA-C	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	618	2	NA	3	0	FALSE	NA	NA	0	C	coding	102	306	55	360	30	0.232	0.768	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2245_CONTIG_1	7	+	1123	7	full-splice_match	TMEM176A	ENST00000484928	1530	7	395	12	multi-exon	FALSE	canonical	0	0	852	2	NA	1	0	FALSE	NA	NA	0	C	coding	252	756	136	891	15	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8295_CONTIG_1	14	-	615	2	novel_in_catalog	SERPINA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	558	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6908_CONTIG_1	4	+	2047	15	full-splice_match	ALB	ENST00000295897	2263	15	48	168	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_387_CONTIG_1	18	-	1564	10	full-splice_match	ACAA2	ENST00000285093	2018	10	427	27	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	50	1240	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5207_CONTIG_1	5	-	1698	2	genic_intron	novelGene_574	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	362	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4125_CONTIG_1	11	-	1549	10	full-splice_match	HPX	ENST00000265983	1652	10	72	31	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	30	1415	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6385_CONTIG_1	17	-	1068	12	novel_not_in_catalog	COPZ2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	130	2	NA	4	0	TRUE	NA	NA	0	A	coding	142	426	230	655	10	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2537_CONTIG_1	2	-	1030	4	full-splice_match	ADI1	ENST00000327435	2391	4	207	1154	multi-exon	FALSE	canonical	0	0	162	2	NA	0	0	FALSE	NA	NA	0	C	coding	179	537	43	579	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_826_CONTIG_1	13	+	884	2	novel_not_in_catalog	COG3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	752	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.55	0.45	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7403_CONTIG_1	4	+	1922	15	full-splice_match	ALB	ENST00000295897	2263	15	50	291	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5179_CONTIG_1	14	-	1379	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	25	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1796_CONTIG_1	4	+	735	6	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	1191	3prime_fragment	FALSE	canonical	0	0	654	2	NA	0	0	FALSE	NA	NA	0	C	coding	232	696	40	735	35	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8250_CONTIG_1	8	-	346	3	incomplete-splice_match	ERICH1	ENST00000262109	1813	6	36	1431	internal_fragment	FALSE	canonical	0	0	64	2	NA	1	1	FALSE	NA	NA	0	A	coding	101	303	43	345	25	0.228	0.772	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4314_CONTIG_1	X	-	688	3	incomplete-splice_match	NKAP	ENST00000371410	1580	9	8	884	internal_fragment	FALSE	canonical	0	0	545	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5038_CONTIG_1	4	-	1551	10	full-splice_match	FGG	ENST00000404648	1760	10	196	13	multi-exon	FALSE	canonical	0	0	122	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2929_CONTIG_1	4	+	2010	15	full-splice_match	ALB	ENST00000295897	2263	15	49	204	multi-exon	FALSE	canonical	0	0	1893	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	0	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5765_CONTIG_1	19	+	393	4	full-splice_match	APOC1	ENST00000252491	461	4	44	24	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	60	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4410_CONTIG_1	3	-	1507	5	full-splice_match	CNBP	ENST00000502976	1626	5	19	100	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	170	510	126	635	35	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6293_CONTIG_1	4	+	2002	15	full-splice_match	ALB	ENST00000295897	2263	15	50	211	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2868_CONTIG_1	6	-	808	6	full-splice_match	HMGN3	ENST00000275036	831	6	15	8	multi-exon	FALSE	canonical	0	0	129	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1421_CONTIG_1	1	-	2165	10	novel_in_catalog	CYP4A11	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	49	2	NA	3	0	FALSE	NA	NA	0	B	coding	375	1125	100	1224	25	0.62	0.38	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2181_CONTIG_1	16	+	1233	5	full-splice_match	HP	ENST00000398131	1252	5	17	2	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7912_CONTIG_1	19	-	1669	8	full-splice_match	A1BG	ENST00000263100	1722	8	36	17	multi-exon	FALSE	canonical	0	0	60	2	NA	0	0	FALSE	NA	NA	0	C	coding	495	1485	27	1511	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2042_CONTIG_1	4	-	2121	6	novel_not_in_catalog	FGA	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	111	2	NA	2	0	TRUE	NA	NA	0	C	coding	618	1854	58	1911	25	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_165_CONTIG_1	5	-	1423	11	incomplete-splice_match	F12	ENST00000253496	2049	14	10	616	internal_fragment	FALSE	canonical	0	0	96	2	NA	0	0	FALSE	NA	NA	0	C	coding	461	1383	40	1422	0	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6878_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3173_CONTIG_1	19	-	1758	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	6	multi-exon	FALSE	canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	15	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3664_CONTIG_1	14	-	1020	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	442	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	47	1018	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8431_CONTIG_1	22	-	1146	5	incomplete-splice_match	TPST2	ENST00000398110	1968	7	703	119	5prime_fragment	FALSE	canonical	0	0	444	2	NA	0	0	FALSE	NA	NA	0	A	coding	241	723	11	733	25	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4084_CONTIG_1	3	-	1174	3	novel_not_in_catalog	MYLK	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	114	2	NA	2	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2195_CONTIG_1	10	+	1496	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	171	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	487	1461	34	1494	15	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_51_CONTIG_1	15	+	488	3	full-splice_match	SERF2	ENST00000249786	1537	3	493	556	multi-exon	FALSE	canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7370_CONTIG_1	1	-	1815	6	full-splice_match	CSRP1	ENST00000340006	1952	6	119	18	multi-exon	FALSE	canonical	0	0	71	2	NA	1	0	FALSE	NA	NA	0	A	coding	193	579	73	651	40	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1988_CONTIG_1	14	+	667	2	incomplete-splice_match	SERPINA3	ENST00000555820	981	3	285	29	internal_fragment	FALSE	canonical	0	0	422	2	NA	0	0	FALSE	NA	NA	0	C	coding	160	480	188	667	25	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6274_CONTIG_1	7	-	287	2	full-splice_match	AZGP1	ENST00000495765	540	2	11	242	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5522_CONTIG_1	16	+	1193	5	full-splice_match	HP	ENST00000398131	1252	5	17	42	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_295_CONTIG_1	12	-	1905	4	incomplete-splice_match	STAT6	ENST00000555641	1804	9	1381	-1482	5prime_fragment	FALSE	canonical	0	0	27	2	NA	1	0	FALSE	NA	NA	0	B	coding	119	357	158	514	100	0.468	0.532	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8727_CONTIG_1	21	+	888	5	full-splice_match	SOD1	ENST00000270142	966	5	71	7	multi-exon	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	78	539	40	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7020_CONTIG_1	4	+	1956	15	full-splice_match	ALB	ENST00000295897	2263	15	127	180	multi-exon	FALSE	canonical	0	0	1815	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	293	1789	65	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4218_CONTIG_1	9	+	733	6	full-splice_match	ORM1	ENST00000259396	802	6	42	27	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_621_CONTIG_1	4	+	1082	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	263	138	internal_fragment	FALSE	canonical	0	0	1055	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	166	1029	40	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_596_CONTIG_1	18	+	616	4	full-splice_match	TTR	ENST00000237014	957	4	150	191	multi-exon	FALSE	canonical	0	0	363	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	28	468	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3732_CONTIG_1	19	+	678	5	novel_in_catalog	RPS9	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	468	2	NA	0	0	FALSE	NA	NA	0	C	coding	194	582	62	643	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1763_CONTIG_1	12	+	2456	11	incomplete-splice_match	C1S	ENST00000360817	2635	12	220	-41	internal_fragment	FALSE	canonical	0	0	1326	2	NA	0	0	FALSE	NA	NA	0	B	coding	688	2064	57	2120	20	0.738	0.262	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1119_CONTIG_1	18	+	786	8	full-splice_match	NDUFV2	ENST00000318388	930	8	97	47	multi-exon	FALSE	canonical	0	0	673	2	NA	0	0	FALSE	NA	NA	0	C	coding	249	747	18	764	55	0.242	0.758	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3272_CONTIG_1	4	+	2047	15	full-splice_match	ALB	ENST00000295897	2263	15	48	168	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8334_CONTIG_1	12	+	1285	9	full-splice_match	GAPDH	ENST00000229239	1875	9	590	0	multi-exon	FALSE	canonical	0	0	1014	2	NA	0	0	FALSE	NA	NA	0	C	coding	335	1005	77	1081	10	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2281_CONTIG_1	3	+	1931	3	full-splice_match	ARL6IP5	ENST00000273258	2101	3	77	93	multi-exon	FALSE	canonical	0	0	421	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8679_CONTIG_1	4	+	1902	15	full-splice_match	ALB	ENST00000295897	2263	15	50	311	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7091_CONTIG_1	4	-	1558	10	full-splice_match	FGG	ENST00000404648	1760	10	193	9	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5965_CONTIG_1	4	+	1995	15	full-splice_match	ALB	ENST00000295897	2263	15	48	220	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7686_CONTIG_1	1	-	2008	2	full-splice_match	CRP	ENST00000255030	2015	2	0	7	multi-exon	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	coding	224	672	105	776	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5145_CONTIG_1	16	+	1072	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	890	2	NA	0	0	TRUE	NA	NA	0	C	coding	294	882	28	909	10	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5250_CONTIG_1	1	+	2126	7	novel_not_in_catalog	VCAM1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1314	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8383_CONTIG_1	3	-	1573	13	full-splice_match	UQCRC1	ENST00000203407	1985	13	408	4	multi-exon	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	480	1440	10	1449	20	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_52_CONTIG_1	12	-	1499	7	full-splice_match	COQ5	ENST00000288532	1535	7	27	9	multi-exon	TRUE	canonical	0	0	216	2	NA	0	0	FALSE	NA	NA	0	A	coding	307	921	75	995	15	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1089_CONTIG_1	16	+	984	6	novel_not_in_catalog	HP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	388	2	NA	0	0	TRUE	NA	NA	0	C	coding	144	432	413	844	40	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_40_CONTIG_1	5	+	860	3	full-splice_match	LEAP2	ENST00000296877	2207	3	1353	-6	multi-exon	FALSE	canonical	0	0	217	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5538_CONTIG_1	4	-	1560	10	full-splice_match	FGG	ENST00000404648	1760	10	193	7	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1579_CONTIG_1	4	+	1997	15	full-splice_match	ALB	ENST00000295897	2263	15	50	216	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4566_CONTIG_1	12	-	1300	11	incomplete-splice_match	A2M	ENST00000318602	4844	36	3539	5	5prime_fragment	FALSE	canonical	0	0	45	2	NA	0	0	FALSE	NA	NA	0	B	coding	267	801	391	1191	10	0.674	0.326	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5483_CONTIG_1	9	-	764	6	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	200	600	92	691	45	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4923_CONTIG_1	2	+	939	2	genic	PTCD3	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	654	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7958_CONTIG_1	22	+	1207	10	novel_not_in_catalog	PPP6R2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1172	2	NA	0	0	FALSE	NA	NA	0	A	coding	247	741	192	932	15	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7018_CONTIG_1	17	-	1359	3	full-splice_match	ACTG1	ENST00000574671	1678	3	318	1	multi-exon	FALSE	canonical	0	0	343	2	NA	1	0	FALSE	NA	NA	0	C	coding	186	558	109	666	50	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4759_CONTIG_1	1	+	2022	12	full-splice_match	RBBP4	ENST00000373493	7943	12	84	5837	multi-exon	FALSE	canonical	0	0	1287	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.468	0.532	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7919_CONTIG_1	4	-	1545	10	full-splice_match	FGG	ENST00000404648	1760	10	193	22	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8505_CONTIG_1	10	-	889	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	188	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1114_CONTIG_1	6	+	1163	4	incomplete-splice_match	SLC22A7	ENST00000372589	2549	10	1342	44	internal_fragment	FALSE	canonical	0	0	339	2	NA	0	0	FALSE	NA	NA	0	A	coding	122	366	26	391	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6149_CONTIG_1	4	-	1557	2	full-splice_match	MRFAP1L1	ENST00000320848	1593	2	26	10	multi-exon	FALSE	canonical	0	0	624	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.17	0.83	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3581_CONTIG_1	17	-	1710	6	full-splice_match	YWHAE	ENST00000264335	2211	6	169	332	multi-exon	FALSE	canonical	0	0	163	2	NA	1	0	FALSE	NA	NA	0	C	coding	255	765	100	864	45	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2616_CONTIG_1	8	-	1663	9	full-splice_match	CLU	ENST00000560366	2841	9	112	1066	multi-exon	FALSE	canonical	0	0	44	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	77	1420	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_235_CONTIG_1	10	-	1261	9	full-splice_match	PHYH	ENST00000263038	1577	9	37	279	multi-exon	FALSE	canonical	0	0	97	2	NA	2	0	FALSE	NA	NA	0	C	coding	338	1014	23	1036	25	0.178	0.822	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_90_CONTIG_1	10	-	831	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	246	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_947_CONTIG_1	4	+	1615	8	full-splice_match	FGB	ENST00000302068	1975	8	59	301	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	55	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3618_CONTIG_1	10	-	819	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	258	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2543_CONTIG_1	1	-	1477	2	novel_in_catalog	HIVEP3	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	222	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.162	0.838	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3403_CONTIG_1	1	-	1257	6	incomplete-splice_match	LRRC41	ENST00000343304	3190	10	1921	12	5prime_fragment	FALSE	canonical	0	0	121	2	NA	0	0	FALSE	NA	NA	0	A	coding	219	657	145	801	30	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7984_CONTIG_1	4	+	1994	15	full-splice_match	ALB	ENST00000295897	2263	15	48	221	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1474_CONTIG_1	15	+	930	4	full-splice_match	B2M	ENST00000558401	1715	4	36	749	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3309_CONTIG_1	4	+	1913	8	full-splice_match	FGB	ENST00000302068	1975	8	57	5	multi-exon	FALSE	canonical	0	0	1250	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4543_CONTIG_1	4	-	1648	13	full-splice_match	GC	ENST00000273951	1972	13	286	38	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	59	1480	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8208_CONTIG_1	4	+	1096	8	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1063	2	NA	1	0	TRUE	NA	NA	0	C	coding	358	1074	5	1078	25	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_610_CONTIG_1	10	+	1603	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	64	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6679_CONTIG_1	4	+	1543	2	antisense	novelGene_CFI_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1452	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.416	0.584	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4872_CONTIG_1	4	+	823	5	incomplete-splice_match	FGB	ENST00000502545	1320	7	-23	520	3prime_fragment	FALSE	canonical	0	0	722	2	NA	1	0	FALSE	NA	NA	0	C	coding	273	819	5	823	45	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4753_CONTIG_1	4	+	1432	11	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	494	3prime_fragment	FALSE	canonical	0	0	1328	2	NA	1	0	FALSE	NA	NA	0	C	coding	464	1392	40	1431	45	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4091_CONTIG_1	7	-	1163	4	incomplete-splice_match	C7orf50	ENST00000397100	1264	5	40	61	5prime_fragment	FALSE	canonical	0	0	130	2	NA	0	0	FALSE	NA	NA	0	A	coding	194	582	2	583	10	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1947_CONTIG_1	2	+	1918	15	full-splice_match	SNX17	ENST00000233575	2044	15	98	28	multi-exon	TRUE	canonical	0	0	1423	2	NA	0	0	FALSE	NA	NA	0	A	coding	470	1410	125	1534	30	0.292	0.708	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5094_CONTIG_1	4	-	1511	9	full-splice_match	FGG	ENST00000336098	1659	9	-11	159	multi-exon	FALSE	canonical	0	0	128	2	NA	2	0	FALSE	NA	NA	0	C	coding	453	1359	51	1409	30	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7444_CONTIG_1	4	-	1384	9	full-splice_match	ADH1A	ENST00000209668	1499	9	45	70	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	70	1194	50	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7709_CONTIG_1	4	+	1977	15	full-splice_match	ALB	ENST00000295897	2263	15	50	236	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6350_CONTIG_1	4	+	2043	15	full-splice_match	ALB	ENST00000295897	2263	15	50	170	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3143_CONTIG_1	19	+	1163	4	full-splice_match	APOE	ENST00000252486	1208	4	44	1	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7566_CONTIG_1	19	+	490	5	full-splice_match	RPL28	ENST00000344063	4796	5	587	3719	multi-exon	FALSE	canonical	0	0	366	2	NA	0	0	FALSE	NA	NA	0	C	coding	137	411	43	453	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3646_CONTIG_1	19	+	694	5	full-splice_match	RPS9	ENST00000302907	829	5	116	19	multi-exon	FALSE	canonical	0	0	463	2	NA	0	0	FALSE	NA	NA	0	C	coding	194	582	57	638	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4623_CONTIG_1	1	-	1059	6	full-splice_match	RHOC	ENST00000339083	1418	6	276	83	multi-exon	FALSE	canonical	0	0	50	2	NA	0	0	FALSE	NA	NA	0	A	coding	193	579	127	705	10	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6689_CONTIG_1	22	-	935	8	incomplete-splice_match	RPL3	ENST00000401609	1289	9	347	7	5prime_fragment	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	251	753	129	881	15	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1241_CONTIG_1	16	+	395	3	full-splice_match	MT2A	ENST00000245185	786	3	385	6	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8022_CONTIG_1	2	-	1239	10	full-splice_match	HAAO	ENST00000294973	1265	10	9	17	multi-exon	FALSE	canonical	0	0	127	2	NA	1	0	FALSE	NA	NA	0	C	coding	286	858	48	905	25	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5068_CONTIG_1	16	-	925	6	incomplete-splice_match	GSPT1	ENST00000434724	7105	15	15	6165	internal_fragment	FALSE	canonical	0	0	537	2	NA	0	0	FALSE	NA	NA	0	A	coding	246	738	186	923	55	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8241_CONTIG_1	X	+	813	7	full-splice_match	PRDX4	ENST00000379341	1005	7	113	79	multi-exon	FALSE	canonical	0	0	777	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	13	813	50	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3772_CONTIG_1	2	+	1772	15	novel_not_in_catalog	GCKR	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1413	2	NA	0	0	TRUE	NA	NA	0	A	coding	509	1527	55	1581	20	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2353_CONTIG_1	4	-	1679	13	full-splice_match	GC	ENST00000273951	1972	13	283	10	multi-exon	FALSE	canonical	0	0	119	2	NA	1	0	FALSE	NA	NA	0	C	coding	474	1422	62	1483	50	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8563_CONTIG_1	4	+	1913	8	full-splice_match	FGB	ENST00000302068	1975	8	57	5	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3400_CONTIG_1	7	+	894	2	novel_in_catalog	CYP3A43	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	174	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	5	0.422	0.578	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2980_CONTIG_1	17	-	1535	8	full-splice_match	VTN	ENST00000226218	2149	8	515	99	multi-exon	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	477	1431	105	1535	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1085_CONTIG_1	9	-	1218	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	44	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	40	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6275_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	48	167	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5545_CONTIG_1	4	+	2032	15	full-splice_match	ALB	ENST00000295897	2263	15	50	181	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	65	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_791_CONTIG_1	11	+	2024	3	incomplete-splice_match	PANX1	ENST00000227638	2769	5	706	39	internal_fragment	FALSE	canonical	0	0	880	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.232	0.768	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5866_CONTIG_1	16	+	1408	7	full-splice_match	HP	ENST00000355906	1443	7	31	4	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4485_CONTIG_1	14	+	1219	7	genic	PNN	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	1183	2	NA	10	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_896_CONTIG_1	12	-	1537	4	novel_in_catalog	RND1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	373	2	NA	0	0	FALSE	NA	NA	0	C	coding	199	597	265	861	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2109_CONTIG_1	4	+	1939	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	168	156	internal_fragment	FALSE	canonical	0	0	1774	2	NA	2	0	FALSE	NA	NA	0	C	coding	499	1497	252	1748	25	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7162_CONTIG_1	17	-	355	5	incomplete-splice_match	DCXR	ENST00000582900	676	8	306	15	5prime_fragment	FALSE	canonical	0	0	41	2	NA	1	0	FALSE	NA	NA	0	C	coding	63	189	165	353	20	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7896_CONTIG_1	16	-	1249	4	full-splice_match	MSRB1	ENST00000361871	1423	4	131	43	multi-exon	FALSE	canonical	0	0	94	2	NA	0	0	FALSE	NA	NA	0	A	coding	94	282	40	321	55	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8568_CONTIG_1	2	+	1292	3	full-splice_match	SPR	ENST00000498749	947	3	51	-396	multi-exon	FALSE	canonical	0	0	489	2	NA	1	0	FALSE	NA	NA	0	A	coding	103	309	1	309	5	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4635_CONTIG_1	15	-	2215	9	novel_not_in_catalog	GATM	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	161	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5309_CONTIG_1	10	+	2411	18	incomplete-splice_match	ITIH2	ENST00000358415	3193	21	51	731	3prime_fragment	FALSE	canonical	0	0	2324	2	NA	1	0	FALSE	NA	NA	0	B	coding	765	2295	116	2410	55	0.654	0.346	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6536_CONTIG_1	10	-	2281	3	full-splice_match	HNRNPF	ENST00000443950	2755	3	55	419	multi-exon	FALSE	canonical	0	0	321	2	NA	0	0	FALSE	NA	NA	0	A	coding	415	1245	433	1677	30	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8529_CONTIG_1	7	-	1304	3	full-splice_match	ZNF394	ENST00000337673	2179	3	16	859	multi-exon	FALSE	canonical	0	0	644	2	NA	0	0	FALSE	NA	NA	0	A	coding	372	1116	189	1304	35	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6925_CONTIG_1	19	-	1117	10	genic_intron	novelGene_233	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	493	2	NA	10	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	65	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2608_CONTIG_1	19	-	923	6	full-splice_match	PRDX2	ENST00000301522	987	6	59	5	multi-exon	FALSE	canonical	0	0	61	2	NA	0	0	FALSE	NA	NA	0	A	coding	198	594	71	664	5	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7961_CONTIG_1	14	-	387	2	incomplete-splice_match	SERPINA1	ENST00000489769	1562	4	1164	11	5prime_fragment	FALSE	canonical	0	0	130	2	NA	0	0	FALSE	NA	NA	0	C	coding	44	132	188	319	5	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7119_CONTIG_1	4	+	1922	15	full-splice_match	ALB	ENST00000295897	2263	15	50	291	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_147_CONTIG_1	4	+	1642	8	full-splice_match	FGB	ENST00000302068	1975	8	64	269	multi-exon	FALSE	canonical	0	0	1243	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3826_CONTIG_1	5	-	499	3	full-splice_match	SEPP1	ENST00000514403	653	3	379	-225	multi-exon	FALSE	canonical	0	0	24	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1488_CONTIG_1	5	-	996	6	incomplete-splice_match	F12	ENST00000253496	2049	14	1003	50	5prime_fragment	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	246	738	154	891	15	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_692_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8698_CONTIG_1	12	-	1624	2	full-splice_match	DUSP6	ENST00000547291	1074	2	384	-934	multi-exon	FALSE	canonical	0	0	200	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5446_CONTIG_1	16	+	320	3	incomplete-splice_match	HP	ENST00000570083	1270	5	239	711	internal_fragment	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	47	141	180	320	40	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1056_CONTIG_1	1	-	2162	13	full-splice_match	C8B	ENST00000535057	2065	13	42	-139	multi-exon	FALSE	canonical	0	0	159	2	NA	0	0	FALSE	NA	NA	0	C	coding	529	1587	383	1969	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8146_CONTIG_1	4	+	1610	8	full-splice_match	FGB	ENST00000302068	1975	8	59	306	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6191_CONTIG_1	4	+	1580	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	524	159	internal_fragment	FALSE	canonical	0	0	1418	2	NA	1	0	FALSE	NA	NA	0	C	coding	463	1389	4	1392	35	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6814_CONTIG_1	6	+	1707	15	incomplete-splice_match	CFB	ENST00000425368	2862	18	1149	6	internal_fragment	FALSE	canonical	0	0	1503	2	NA	0	0	FALSE	NA	NA	0	C	coding	542	1626	31	1656	30	0.196	0.804	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5045_CONTIG_1	4	-	608	2	incomplete-splice_match	NUDT6	ENST00000510735	739	3	121	10	5prime_fragment	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2810_CONTIG_1	1	+	932	8	full-splice_match	RPL5	ENST00000370321	1043	8	12	99	multi-exon	FALSE	canonical	0	0	872	2	NA	0	0	FALSE	NA	NA	0	C	coding	284	852	79	930	25	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5005_CONTIG_1	1	+	653	3	novel_not_in_catalog	APCS	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	354	2	NA	0	0	TRUE	NA	NA	0	C	coding	140	420	97	516	45	0.96	0.04	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7049_CONTIG_1	5	+	2203	5	incomplete-splice_match	SFXN1	ENST00000321442	4231	11	894	1134	internal_fragment	FALSE	canonical	0	0	232	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	0	0.486	0.514	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7343_CONTIG_1	11	-	917	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	283	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7174_CONTIG_1	16	+	1109	3	full-splice_match	HP	ENST00000566821	3024	3	1911	4	multi-exon	FALSE	canonical	0	0	170	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	263	946	10	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3522_CONTIG_1	11	+	943	3	full-splice_match	NNMT	ENST00000299964	1610	3	622	45	multi-exon	FALSE	canonical	0	0	472	2	NA	1	0	FALSE	NA	NA	0	C	coding	264	792	111	902	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7298_CONTIG_1	4	+	1980	15	full-splice_match	ALB	ENST00000295897	2263	15	48	235	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4711_CONTIG_1	19	+	295	4	full-splice_match	APOC1	ENST00000252491	461	4	44	122	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7252_CONTIG_1	14	-	312	2	incomplete-splice_match	SERPINA1	ENST00000553327	581	3	256	13	internal_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	88	264	48	311	20	0.114	0.886	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2274_CONTIG_1	19	+	638	4	novel_not_in_catalog	FTL	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	517	2	NA	0	0	TRUE	NA	NA	0	C	coding	120	360	200	559	30	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7895_CONTIG_1	19	+	1740	2	full-splice_match	ZFP36	ENST00000248673	1745	2	0	5	multi-exon	FALSE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	C	coding	332	996	41	1036	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1588_CONTIG_1	3	+	1575	7	full-splice_match	AHSG	ENST00000411641	1711	7	133	3	multi-exon	FALSE	canonical	0	0	845	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	87	1187	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5714_CONTIG_1	3	-	1500	3	incomplete-splice_match	PROS1	ENST00000407433	3335	15	1722	113	5prime_fragment	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.508	0.492	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_124_CONTIG_1	17	-	1354	9	full-splice_match	ASGR2	ENST00000254850	1396	9	35	7	multi-exon	FALSE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	C	coding	287	861	245	1105	10	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_838_CONTIG_1	16	-	1914	16	novel_not_in_catalog	CES1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	93	2	NA	2	0	TRUE	NA	NA	0	C	coding	567	1701	42	1742	20	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2411_CONTIG_1	19	-	1423	2	full-splice_match	LRG1	ENST00000306390	3036	2	438	1175	multi-exon	FALSE	canonical	0	0	55	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	24	1064	70	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6853_CONTIG_1	11	+	1263	5	incomplete-splice_match	GLYATL1	ENST00000527708	1528	7	248	17	internal_fragment	FALSE	canonical	0	0	483	2	NA	0	0	FALSE	NA	NA	0	B	coding	261	783	116	898	45	0.558	0.442	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1949_CONTIG_1	12	+	1328	2	full-splice_match	METTL7B	ENST00000394252	1506	2	155	23	multi-exon	FALSE	canonical	0	0	552	2	NA	0	0	FALSE	NA	NA	0	C	coding	244	732	55	786	55	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1221_CONTIG_1	14	-	1381	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	23	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	10	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4302_CONTIG_1	2	-	1444	4	full-splice_match	TUBA4A	ENST00000248437	2162	4	123	595	multi-exon	FALSE	canonical	0	0	54	2	NA	1	0	FALSE	NA	NA	0	A	coding	448	1344	52	1395	35	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_175_CONTIG_1	19	+	1528	10	full-splice_match	HMG20B	ENST00000333651	1596	10	45	23	multi-exon	FALSE	canonical	0	0	971	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	31	981	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_497_CONTIG_1	19	+	866	4	full-splice_match	FTL	ENST00000331825	878	4	8	4	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_211_CONTIG_1	3	+	1559	7	full-splice_match	AHSG	ENST00000411641	1711	7	137	15	multi-exon	FALSE	canonical	0	0	841	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	83	1183	25	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7773_CONTIG_1	1	+	915	2	full-splice_match	APCS	ENST00000255040	926	2	1	10	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	C	coding	223	669	97	765	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5744_CONTIG_1	15	-	961	7	full-splice_match	ANP32A	ENST00000465139	2440	7	-9	1488	multi-exon	FALSE	canonical	0	0	207	2	NA	0	0	FALSE	NA	NA	0	A	coding	247	741	160	900	10	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4562_CONTIG_1	4	+	1280	4	novel_in_catalog	ABCE1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	899	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8541_CONTIG_1	6	+	1575	13	novel_not_in_catalog	PLG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1546	2	NA	0	0	TRUE	NA	NA	0	C	coding	302	906	599	1504	40	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4288_CONTIG_1	19	+	1164	4	full-splice_match	APOE	ENST00000252486	1208	4	42	2	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7445_CONTIG_1	14	-	637	4	incomplete-splice_match	SERPINA1	ENST00000449399	1559	6	856	66	5prime_fragment	FALSE	canonical	0	0	92	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	176	637	55	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1392_CONTIG_1	12	+	1400	7	full-splice_match	KRT18	ENST00000388835	1562	7	153	9	multi-exon	FALSE	canonical	0	0	1229	2	NA	0	0	FALSE	NA	NA	0	C	coding	430	1290	58	1347	25	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2680_CONTIG_1	10	-	914	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	163	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_329_CONTIG_1	16	+	1233	5	full-splice_match	HP	ENST00000398131	1252	5	17	2	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1568_CONTIG_1	18	-	684	5	full-splice_match	CYB5A	ENST00000340533	834	5	72	78	multi-exon	FALSE	canonical	0	0	198	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	70	471	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1423_CONTIG_1	2	-	484	4	full-splice_match	FABP1	ENST00000295834	546	4	54	8	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	46	426	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6278_CONTIG_1	1	-	773	2	incomplete-splice_match	PI4KB	ENST00000529142	2603	10	1635	195	5prime_fragment	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3488_CONTIG_1	10	+	1736	3	full-splice_match	DDIT4	ENST00000307365	1748	3	4	8	multi-exon	FALSE	canonical	0	0	402	2	NA	0	0	FALSE	NA	NA	0	A	coding	232	696	198	893	30	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8646_CONTIG_1	4	+	1939	15	full-splice_match	ALB	ENST00000295897	2263	15	50	274	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6442_CONTIG_1	4	+	2006	15	full-splice_match	ALB	ENST00000295897	2263	15	50	207	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_114_CONTIG_1	16	+	1058	3	full-splice_match	HP	ENST00000566821	3024	3	1902	64	multi-exon	FALSE	canonical	0	0	179	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	272	955	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3021_CONTIG_1	X	-	1482	8	full-splice_match	TMLHE	ENST00000334398	2832	8	2	1348	multi-exon	FALSE	canonical	0	0	143	2	NA	0	0	FALSE	NA	NA	0	A	coding	421	1263	145	1407	25	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5971_CONTIG_1	4	+	2047	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1882	2	NA	0	0	TRUE	NA	NA	0	C	coding	605	1815	42	1856	25	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7529_CONTIG_1	6	+	860	5	novel_not_in_catalog	RPL10A	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	689	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1970_CONTIG_1	4	+	1617	8	full-splice_match	FGB	ENST00000302068	1975	8	57	301	multi-exon	FALSE	canonical	0	0	1250	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	55	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7975_CONTIG_1	4	+	1988	15	full-splice_match	ALB	ENST00000295897	2263	15	48	227	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6839_CONTIG_1	6	+	965	5	full-splice_match	TPD52L1	ENST00000368388	2147	5	91	1091	multi-exon	FALSE	canonical	0	0	482	2	NA	0	0	FALSE	NA	NA	0	A	coding	131	393	97	489	30	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_842_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	14	2	multi-exon	FALSE	canonical	0	0	295	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3838_CONTIG_1	15	-	817	3	full-splice_match	MTHFS	ENST00000258874	907	3	22	68	multi-exon	TRUE	canonical	0	0	156	2	NA	1	0	FALSE	NA	NA	0	A	coding	203	609	40	648	40	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6875_CONTIG_1	4	+	2007	15	full-splice_match	ALB	ENST00000295897	2263	15	48	208	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	5	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6625_CONTIG_1	4	-	1149	8	incomplete-splice_match	FGG	ENST00000336098	1659	9	-5	515	internal_fragment	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	368	1104	45	1148	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5490_CONTIG_1	11	+	843	3	genic_intron	novelGene_488	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	224	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5129_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	48	170	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5653_CONTIG_1	19	-	489	2	antisense	novelGene_PNPLA6_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2206_CONTIG_1	5	-	1900	11	full-splice_match	ETF1	ENST00000360541	3742	11	64	1778	multi-exon	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3200_CONTIG_1	4	-	1559	10	full-splice_match	FGG	ENST00000404648	1760	10	193	8	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4691_CONTIG_1	4	+	1445	12	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1382	2	NA	1	0	TRUE	NA	NA	0	C	coding	439	1317	40	1356	30	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3094_CONTIG_1	8	-	979	6	full-splice_match	HRSP12	ENST00000254878	1057	6	66	12	multi-exon	FALSE	canonical	0	0	144	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3633_CONTIG_1	6	+	1555	2	genic_intron	novelGene_750	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	403	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1980_CONTIG_1	10	-	1266	4	incomplete-splice_match	GFRA1	ENST00000369236	2592	9	1203	123	5prime_fragment	FALSE	canonical	0	0	50	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3660_CONTIG_1	14	-	1018	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	445	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2856_CONTIG_1	7	+	590	6	incomplete-splice_match	ASL	ENST00000395332	1622	16	1049	-17	internal_fragment	FALSE	canonical	0	0	409	2	NA	0	0	FALSE	NA	NA	0	B	coding	181	543	9	551	15	0.566	0.434	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8441_CONTIG_1	14	-	1553	5	full-splice_match	SLC10A1	ENST00000216540	2049	5	21	475	multi-exon	FALSE	canonical	0	0	469	2	NA	1	0	FALSE	NA	NA	0	C	coding	349	1047	114	1160	60	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1735_CONTIG_1	17	+	529	5	full-splice_match	RPL23A	ENST00000422514	1562	5	607	426	multi-exon	FALSE	canonical	0	0	462	2	NA	1	0	FALSE	NA	NA	0	A	coding	156	468	7	474	25	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1398_CONTIG_1	8	+	800	2	antisense	novelGene_CTSB_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	467	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	75	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5833_CONTIG_1	8	+	1119	4	full-splice_match	LY6E	ENST00000292494	1181	4	42	20	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	121	513	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8082_CONTIG_1	1	-	2718	11	full-splice_match	BSDC1	ENST00000455895	2846	11	14	114	multi-exon	FALSE	canonical	0	0	31	2	NA	0	0	FALSE	NA	NA	0	C	coding	430	1290	21	1310	30	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_785_CONTIG_1	1	+	1026	6	full-splice_match	C4BPB	ENST00000243611	1117	6	75	16	multi-exon	FALSE	canonical	0	0	837	2	NA	0	0	FALSE	NA	NA	0	C	coding	243	729	247	975	15	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8645_CONTIG_1	3	+	264	2	incomplete-splice_match	TF	ENST00000461695	990	7	712	14	internal_fragment	FALSE	canonical	0	0	81	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8629_CONTIG_1	22	-	958	9	full-splice_match	SLC25A1	ENST00000215882	1641	9	106	577	multi-exon	FALSE	canonical	0	0	145	2	NA	0	0	FALSE	NA	NA	0	A	coding	302	906	52	957	35	0.202	0.798	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2610_CONTIG_1	15	+	1730	13	novel_in_catalog	IVD	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1200	2	NA	0	0	FALSE	NA	NA	0	B	coding	345	1035	158	1192	5	0.722	0.278	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_221_CONTIG_1	21	-	1799	15	novel_not_in_catalog	CCT8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1390_CONTIG_1	3	-	646	4	full-splice_match	RPL29	ENST00000294189	723	4	47	30	multi-exon	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	coding	159	477	48	524	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6691_CONTIG_1	4	-	2155	6	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	493	-981	5prime_fragment	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.304	0.696	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6414_CONTIG_1	2	+	1682	4	full-splice_match	IL1RN	ENST00000409930	848	4	37	-871	multi-exon	FALSE	canonical	0	0	345	2	NA	0	0	FALSE	NA	NA	0	A	coding	143	429	130	558	55	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7246_CONTIG_1	5	-	1374	2	full-splice_match	CD14	ENST00000302014	1886	2	507	5	multi-exon	FALSE	canonical	0	0	126	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	124	1248	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8580_CONTIG_1	11	+	1805	8	full-splice_match	SERPING1	ENST00000278407	2002	8	167	30	multi-exon	FALSE	canonical	0	0	1309	2	NA	1	0	FALSE	NA	NA	0	C	coding	500	1500	61	1560	55	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5532_CONTIG_1	4	+	2000	15	full-splice_match	ALB	ENST00000295897	2263	15	49	214	multi-exon	FALSE	canonical	0	0	1893	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	41	1867	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4015_CONTIG_1	20	-	1226	6	incomplete-splice_match	HAO1	ENST00000378789	1777	8	543	8	5prime_fragment	FALSE	canonical	0	0	54	2	NA	2	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	0.568	0.432	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4710_CONTIG_1	8	-	2232	13	incomplete-splice_match	RAD21	ENST00000297338	3749	14	296	1221	5prime_fragment	FALSE	canonical	0	0	136	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.248	0.752	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1736_CONTIG_1	8	+	1630	8	novel_not_in_catalog	GRINA	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	1203	2	NA	0	0	TRUE	NA	NA	0	A	coding	472	1416	124	1539	5	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6025_CONTIG_1	9	+	1575	4	novel_not_in_catalog	SLC31A1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	372	2	NA	3	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7751_CONTIG_1	2	+	1799	3	antisense	novelGene_FTOP1_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	515	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7269_CONTIG_1	1	-	1079	7	full-splice_match	ANP32E	ENST00000314136	3453	7	157	2217	multi-exon	FALSE	canonical	0	0	267	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2118_CONTIG_1	4	+	1815	8	full-splice_match	FGB	ENST00000302068	1975	8	59	101	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2541_CONTIG_1	18	-	1716	7	incomplete-splice_match	NARS	ENST00000256854	3099	14	1191	192	5prime_fragment	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.254	0.746	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8428_CONTIG_1	4	+	1979	15	full-splice_match	ALB	ENST00000295897	2263	15	50	234	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7448_CONTIG_1	7	-	1134	2	full-splice_match	MPLKIP	ENST00000306984	7668	2	-186	6720	multi-exon	FALSE	canonical	0	0	617	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2702_CONTIG_1	4	+	1706	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	182	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6095_CONTIG_1	9	-	1525	3	full-splice_match	BAAT	ENST00000395051	2252	3	12	715	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	60	1313	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6056_CONTIG_1	6	-	847	7	full-splice_match	GSTA2	ENST00000493422	1303	7	94	362	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	63	728	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7940_CONTIG_1	14	+	1496	6	full-splice_match	SLC25A47	ENST00000361529	1738	6	-2	244	multi-exon	FALSE	canonical	0	0	726	2	NA	0	0	FALSE	NA	NA	0	A	coding	308	924	81	1004	20	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7592_CONTIG_1	17	-	992	7	incomplete-splice_match	APOH	ENST00000205948	1176	8	18	166	internal_fragment	FALSE	canonical	0	0	84	2	NA	1	0	FALSE	NA	NA	0	C	coding	324	972	21	992	20	0.17	0.83	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3804_CONTIG_1	15	+	934	4	full-splice_match	B2M	ENST00000558401	1715	4	36	745	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6143_CONTIG_1	12	+	1851	7	incomplete-splice_match	C1S	ENST00000402681	2522	11	738	-67	internal_fragment	FALSE	canonical	0	0	678	2	NA	1	0	FALSE	NA	NA	0	B	coding	397	1191	282	1472	25	0.54	0.46	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3774_CONTIG_1	5	-	562	5	full-splice_match	TAF9	ENST00000380822	1648	5	22	1064	multi-exon	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1539_CONTIG_1	5	-	1977	14	full-splice_match	F12	ENST00000253496	2049	14	30	42	multi-exon	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	615	1845	20	1864	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8545_CONTIG_1	19	-	379	3	full-splice_match	UQCR11	ENST00000591899	1315	3	19	917	multi-exon	FALSE	canonical	0	0	103	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4984_CONTIG_1	4	+	2193	15	full-splice_match	ALB	ENST00000295897	2263	15	48	22	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5284_CONTIG_1	10	-	1491	11	incomplete-splice_match	KIF5B	ENST00000302418	5877	26	19	4367	internal_fragment	FALSE	canonical	0	0	565	2	NA	0	0	FALSE	NA	NA	0	A	coding	350	1050	440	1489	35	0.126	0.874	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7015_CONTIG_1	5	-	2021	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	35	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.286	0.714	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2578_CONTIG_1	6	-	804	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	121	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	63	728	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_426_CONTIG_1	4	+	1469	11	full-splice_match	ALB	ENST00000511370	1519	11	23	27	multi-exon	FALSE	canonical	0	0	1363	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	474	1337	15	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3940_CONTIG_1	11	+	1048	2	incomplete-splice_match	BIRC3	ENST00000263464	5197	9	-11	4160	3prime_fragment	FALSE	canonical	0	0	88	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3380_CONTIG_1	16	+	1114	3	full-splice_match	HP	ENST00000566821	3024	3	1909	1	multi-exon	FALSE	canonical	0	0	172	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	265	948	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3881_CONTIG_1	11	-	1054	11	novel_not_in_catalog	ARFGAP2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	96	2	NA	0	0	TRUE	NA	NA	0	C	coding	343	1029	25	1053	15	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6693_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2435_CONTIG_1	4	+	2053	15	full-splice_match	ALB	ENST00000295897	2263	15	50	160	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_572_CONTIG_1	4	+	1597	8	full-splice_match	FGB	ENST00000302068	1975	8	59	319	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3626_CONTIG_1	16	+	1234	5	full-splice_match	HP	ENST00000398131	1252	5	17	1	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7655_CONTIG_1	9	+	763	6	full-splice_match	ORM1	ENST00000259396	802	6	42	-3	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7238_CONTIG_1	9	+	871	7	full-splice_match	C8G	ENST00000224181	855	7	-10	-6	multi-exon	FALSE	canonical	0	0	665	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	71	676	10	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2382_CONTIG_1	22	+	951	4	incomplete-splice_match	FBXO7	ENST00000266087	2195	9	152	1092	3prime_fragment	FALSE	canonical	0	0	820	2	NA	0	0	FALSE	NA	NA	0	A	coding	258	774	176	949	30	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1919_CONTIG_1	1	+	1514	7	novel_in_catalog	DCAF6	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	913	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2305_CONTIG_1	19	-	1256	2	full-splice_match	LRG1	ENST00000306390	3036	2	438	1342	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	24	1064	65	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4320_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	14	2	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3820_CONTIG_1	4	+	2037	15	full-splice_match	ALB	ENST00000295897	2263	15	48	178	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2012_CONTIG_1	5	+	2011	8	full-splice_match	BHMT	ENST00000274353	2497	8	30	456	multi-exon	FALSE	canonical	0	0	1114	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	78	1295	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_746_CONTIG_1	4	-	1478	10	full-splice_match	FGG	ENST00000404648	1760	10	196	86	multi-exon	FALSE	canonical	0	0	122	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	40	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7264_CONTIG_1	X	+	774	3	full-splice_match	MAOA	ENST00000490604	557	3	-73	-144	multi-exon	FALSE	canonical	0	0	338	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1903_CONTIG_1	4	+	2058	15	full-splice_match	ALB	ENST00000295897	2263	15	48	157	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6527_CONTIG_1	9	-	689	6	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	192	576	92	667	20	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8424_CONTIG_1	16	+	852	7	full-splice_match	IL32	ENST00000440815	920	7	-11	79	multi-exon	FALSE	canonical	0	0	369	2	NA	1	0	FALSE	NA	NA	0	C	coding	188	564	169	732	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5225_CONTIG_1	11	+	2264	13	full-splice_match	CAT	ENST00000241052	2302	13	16	22	multi-exon	FALSE	canonical	0	0	1591	2	NA	1	0	FALSE	NA	NA	0	C	coding	527	1581	74	1654	45	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_977_CONTIG_1	15	-	1663	7	incomplete-splice_match	GATM	ENST00000396659	2597	9	785	149	5prime_fragment	FALSE	canonical	0	0	39	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.258	0.742	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5340_CONTIG_1	4	+	2047	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	4	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	45	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2306_CONTIG_1	4	+	1584	8	full-splice_match	FGB	ENST00000302068	1975	8	57	334	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	7	1479	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2179_CONTIG_1	10	-	841	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	236	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4274_CONTIG_1	9	+	2200	10	full-splice_match	SNAPC3	ENST00000490969	2524	10	3	321	multi-exon	TRUE	canonical	0	0	1691	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	15	0.458	0.542	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7257_CONTIG_1	2	-	1029	5	full-splice_match	SUMO1	ENST00000392246	1536	5	42	465	multi-exon	FALSE	canonical	0	0	127	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_355_CONTIG_1	4	-	1762	11	incomplete-splice_match	CFI	ENST00000512148	1914	12	71	81	5prime_fragment	FALSE	canonical	0	0	271	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2696_CONTIG_1	7	-	745	5	incomplete-splice_match	TMEM176B	ENST00000326442	1129	7	367	17	5prime_fragment	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	123	515	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3608_CONTIG_1	3	-	2009	3	full-splice_match	CISH	ENST00000348721	2043	3	7	27	multi-exon	FALSE	canonical	0	0	194	2	NA	0	0	FALSE	NA	NA	0	C	coding	258	774	175	948	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_892_CONTIG_1	17	-	763	8	full-splice_match	DCXR	ENST00000306869	887	8	31	93	multi-exon	FALSE	canonical	0	0	71	2	NA	0	0	FALSE	NA	NA	0	C	coding	244	732	20	751	30	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1232_CONTIG_1	4	+	2039	15	full-splice_match	ALB	ENST00000295897	2263	15	50	174	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5028_CONTIG_1	16	+	1236	5	full-splice_match	HP	ENST00000398131	1252	5	14	2	multi-exon	FALSE	canonical	0	0	295	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7841_CONTIG_1	19	-	775	5	full-splice_match	BLVRB	ENST00000263368	873	5	94	4	multi-exon	FALSE	canonical	0	0	137	2	NA	0	0	FALSE	NA	NA	0	C	coding	206	618	59	676	25	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5718_CONTIG_1	7	-	2070	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	81	2	multi-exon	FALSE	canonical	0	0	174	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1926_CONTIG_1	19	-	1649	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	115	multi-exon	FALSE	canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	30	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7798_CONTIG_1	4	-	1346	5	incomplete-splice_match	ADH4	ENST00000423445	1961	9	482	133	5prime_fragment	FALSE	canonical	0	0	157	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3344_CONTIG_1	4	-	1577	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	542	-452	5prime_fragment	FALSE	canonical	0	0	217	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4366_CONTIG_1	14	-	2028	5	full-splice_match	SLC10A1	ENST00000216540	2049	5	21	0	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	114	1160	50	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2498_CONTIG_1	2	+	1445	3	novel_in_catalog	NEU4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	245	2	NA	0	0	FALSE	NA	NA	0	C	coding	119	357	884	1240	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1662_CONTIG_1	7	-	870	4	full-splice_match	CHCHD2	ENST00000395422	901	4	4	27	multi-exon	FALSE	canonical	0	0	209	2	NA	0	0	FALSE	NA	NA	0	C	coding	151	453	160	612	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4304_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	50	171	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2149_CONTIG_1	4	-	1048	6	incomplete-splice_match	NAF1	ENST00000422287	1604	8	32	524	internal_fragment	FALSE	canonical	0	0	496	2	NA	0	0	FALSE	NA	NA	0	A	coding	305	915	132	1046	40	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5766_CONTIG_1	19	+	1136	4	full-splice_match	APOE	ENST00000252486	1208	4	42	30	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5109_CONTIG_1	11	+	1949	14	full-splice_match	F2	ENST00000311907	2023	14	51	23	multi-exon	FALSE	canonical	0	0	1730	2	NA	0	0	FALSE	NA	NA	0	C	coding	622	1866	6	1871	40	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4835_CONTIG_1	8	+	574	4	full-splice_match	NDUFB9	ENST00000276689	711	4	28	109	multi-exon	FALSE	canonical	0	0	464	2	NA	0	0	FALSE	NA	NA	0	C	coding	172	516	57	572	15	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8041_CONTIG_1	10	+	1879	14	full-splice_match	OPTN	ENST00000378757	3304	14	-56	1481	multi-exon	FALSE	canonical	0	0	1813	2	NA	0	0	FALSE	NA	NA	0	C	coding	559	1677	202	1878	25	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4638_CONTIG_1	4	-	2049	5	full-splice_match	FGA	ENST00000403106	2248	5	22	177	multi-exon	FALSE	canonical	0	0	111	2	NA	1	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	20	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2975_CONTIG_1	4	-	1563	10	full-splice_match	FGG	ENST00000404648	1760	10	193	4	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2087_CONTIG_1	4	-	1895	9	full-splice_match	ADH4	ENST00000265512	1993	9	-32	130	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6844_CONTIG_1	11	+	1099	8	incomplete-splice_match	ACAT1	ENST00000265838	1761	12	433	229	internal_fragment	FALSE	canonical	0	0	821	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5819_CONTIG_1	14	-	1709	2	full-splice_match	ZFP36L1	ENST00000439696	3190	2	173	1308	multi-exon	FALSE	canonical	0	0	186	2	NA	0	0	FALSE	NA	NA	0	C	coding	338	1014	130	1143	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2956_CONTIG_1	19	+	622	4	novel_not_in_catalog	APOE	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	265	2	NA	1	0	TRUE	NA	NA	0	C	coding	176	528	68	595	0	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2916_CONTIG_1	9	-	2902	17	full-splice_match	VCP	ENST00000358901	4370	17	619	849	multi-exon	FALSE	canonical	0	0	294	2	NA	0	0	FALSE	NA	NA	0	A	coding	806	2418	278	2695	25	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2492_CONTIG_1	4	+	1212	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	221	50	internal_fragment	FALSE	canonical	0	0	1097	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	208	1071	0	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_193_CONTIG_1	4	+	1641	8	full-splice_match	FGB	ENST00000302068	1975	8	55	279	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_744_CONTIG_1	19	+	1115	4	full-splice_match	APOE	ENST00000252486	1208	4	44	49	multi-exon	FALSE	canonical	0	0	303	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	68	1018	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1280_CONTIG_1	11	-	518	4	novel_not_in_catalog	APOA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	17	2	NA	0	0	TRUE	NA	NA	0	C	coding	160	480	38	517	20	0.928	0.072	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1215_CONTIG_1	8	-	1803	10	full-splice_match	DPYS	ENST00000351513	2127	10	225	99	multi-exon	FALSE	canonical	0	0	172	2	NA	1	0	FALSE	NA	NA	0	C	coding	445	1335	131	1465	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1577_CONTIG_1	1	+	1268	6	full-splice_match	CFHR3	ENST00000367425	1645	6	18	359	multi-exon	FALSE	canonical	0	0	870	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2636_CONTIG_1	4	+	1300	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	180	3	internal_fragment	FALSE	canonical	0	0	1138	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	249	1112	35	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4730_CONTIG_1	4	+	2013	15	full-splice_match	ALB	ENST00000295897	2263	15	48	202	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8521_CONTIG_1	10	+	1493	10	full-splice_match	VDAC2	ENST00000332211	1557	10	53	11	multi-exon	FALSE	canonical	0	0	953	2	NA	0	0	FALSE	NA	NA	0	C	coding	283	849	194	1042	40	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6604_CONTIG_1	1	+	1469	7	novel_in_catalog	UBE4B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	798	2	NA	0	0	FALSE	NA	NA	0	A	coding	288	864	63	926	55	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7861_CONTIG_1	12	-	573	4	incomplete-splice_match	C1R	ENST00000535233	1020	7	448	-1	5prime_fragment	FALSE	canonical	0	0	105	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1668_CONTIG_1	2	-	275	2	incomplete-splice_match	RNF149	ENST00000424632	2010	8	614	1121	internal_fragment	FALSE	canonical	0	0	210	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.466	0.534	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5004_CONTIG_1	4	+	1321	10	incomplete-splice_match	ALB	ENST00000509063	1911	14	-15	605	3prime_fragment	FALSE	canonical	0	0	1230	2	NA	0	0	FALSE	NA	NA	0	C	coding	427	1281	40	1320	35	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4693_CONTIG_1	3	+	1961	4	full-splice_match	RPL15	ENST00000307839	2730	4	605	164	multi-exon	FALSE	canonical	0	0	343	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6594_CONTIG_1	5	-	500	4	full-splice_match	RPS23	ENST00000296674	3437	4	223	2714	multi-exon	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	A	coding	143	429	32	460	40	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2462_CONTIG_1	1	-	1821	2	full-splice_match	CRP	ENST00000255030	2015	2	0	194	multi-exon	FALSE	canonical	0	0	165	2	NA	1	0	FALSE	NA	NA	0	C	coding	224	672	105	776	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2166_CONTIG_1	2	+	951	4	full-splice_match	SSB	ENST00000461708	619	4	-21	-311	multi-exon	FALSE	canonical	0	0	297	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	128	520	70	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1408_CONTIG_1	19	+	802	4	novel_not_in_catalog	FTL	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	506	2	NA	1	0	TRUE	NA	NA	0	C	coding	153	459	200	658	5	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5731_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	51	160	multi-exon	FALSE	canonical	0	0	1891	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	35	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2606_CONTIG_1	5	+	1274	6	novel_in_catalog	BHMT	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	664	2	NA	0	0	FALSE	NA	NA	0	C	coding	276	828	67	894	80	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_155_CONTIG_1	14	-	1022	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	441	multi-exon	FALSE	canonical	0	0	43	2	NA	1	0	FALSE	NA	NA	0	C	coding	325	975	48	1022	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2062_CONTIG_1	3	+	1448	8	incomplete-splice_match	CRELD1	ENST00000397170	1728	11	311	-31	internal_fragment	FALSE	canonical	0	0	787	2	NA	1	0	FALSE	NA	NA	0	A	coding	139	417	583	999	35	0.192	0.808	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2867_CONTIG_1	4	+	1511	8	full-splice_match	FGB	ENST00000302068	1975	8	61	403	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	3	1475	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3199_CONTIG_1	5	+	1615	7	novel_not_in_catalog	C5orf51	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	859	2	NA	1	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7901_CONTIG_1	5	-	2035	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	21	multi-exon	FALSE	canonical	0	0	57	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3859_CONTIG_1	3	+	1377	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	195	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8454_CONTIG_1	9	-	1555	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	847	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	45	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_309_CONTIG_1	1	+	983	4	novel_in_catalog	TIPRL	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	504	2	NA	0	0	FALSE	NA	NA	0	A	coding	177	531	124	654	60	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6082_CONTIG_1	16	-	1459	9	incomplete-splice_match	EIF3CL	ENST00000398944	3053	21	1436	158	5prime_fragment	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	B	coding	455	1365	31	1395	35	0.704	0.296	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6869_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6110_CONTIG_1	2	+	799	8	full-splice_match	SPP2	ENST00000373368	860	8	62	-1	multi-exon	FALSE	canonical	0	0	692	2	NA	0	0	FALSE	NA	NA	0	C	coding	202	606	74	679	15	0.25	0.75	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2076_CONTIG_1	4	+	627	5	incomplete-splice_match	FGB	ENST00000302068	1975	8	493	855	internal_fragment	FALSE	canonical	0	0	528	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3107_CONTIG_1	14	-	771	4	novel_in_catalog	SERPINA1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	235	705	67	771	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1986_CONTIG_1	18	-	1585	10	full-splice_match	ACAA2	ENST00000285093	2018	10	427	6	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	50	1240	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3736_CONTIG_1	4	+	1666	13	incomplete-splice_match	ALB	ENST00000295897	2263	15	338	259	internal_fragment	FALSE	canonical	0	0	1604	2	NA	1	0	FALSE	NA	NA	0	C	coding	499	1497	82	1578	30	0.146	0.854	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7359_CONTIG_1	12	+	1032	4	full-splice_match	PEBP1	ENST00000261313	1697	4	266	399	multi-exon	FALSE	canonical	0	0	432	2	NA	1	0	FALSE	NA	NA	0	C	coding	187	561	87	647	25	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6232_CONTIG_1	1	+	1042	6	novel_not_in_catalog	CFHR2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	707	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.544	0.456	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_907_CONTIG_1	2	+	420	5	full-splice_match	RPL31	ENST00000264258	1865	5	578	867	multi-exon	FALSE	canonical	0	0	369	2	NA	0	0	FALSE	NA	NA	0	C	coding	125	375	24	398	45	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4895_CONTIG_1	19	+	808	4	full-splice_match	FTL	ENST00000331825	878	4	8	62	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	25	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3938_CONTIG_1	10	-	1913	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	3	7	multi-exon	FALSE	canonical	0	0	260	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4215_CONTIG_1	14	-	1019	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	444	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3114_CONTIG_1	14	-	1014	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-10	446	multi-exon	FALSE	canonical	0	0	40	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	45	1013	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3762_CONTIG_1	3	+	2271	17	full-splice_match	TF	ENST00000402696	2968	17	437	260	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2107_CONTIG_1	21	+	1357	7	full-splice_match	CXADR	ENST00000284878	6254	7	645	4252	multi-exon	FALSE	canonical	0	0	936	2	NA	0	0	FALSE	NA	NA	0	A	coding	365	1095	104	1198	35	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_512_CONTIG_1	4	+	1610	8	full-splice_match	FGB	ENST00000302068	1975	8	59	306	multi-exon	FALSE	canonical	0	0	1248	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3806_CONTIG_1	6	+	491	6	full-splice_match	RPS12	ENST00000230050	631	6	128	12	multi-exon	FALSE	canonical	0	0	418	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	83	478	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5360_CONTIG_1	4	+	1956	15	full-splice_match	ALB	ENST00000295897	2263	15	48	259	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6935_CONTIG_1	12	+	1132	5	incomplete-splice_match	ACAD10	ENST00000313698	3959	21	2667	160	internal_fragment	FALSE	canonical	0	0	527	2	NA	0	0	FALSE	NA	NA	0	A	coding	219	657	9	665	10	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6961_CONTIG_1	11	-	534	4	full-splice_match	SAA4	ENST00000278222	727	4	91	102	multi-exon	FALSE	canonical	0	0	86	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	91	480	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3001_CONTIG_1	9	-	648	6	novel_not_in_catalog	AMBP	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	208	2	NA	0	0	TRUE	NA	NA	0	C	coding	185	555	92	646	35	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4446_CONTIG_1	10	-	1514	6	full-splice_match	BNIP3	ENST00000368636	1160	6	-6	-348	multi-exon	FALSE	canonical	0	0	177	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	65	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_975_CONTIG_1	3	-	1609	12	incomplete-splice_match	TKT	ENST00000423525	2831	15	-21	1243	internal_fragment	FALSE	canonical	0	0	186	2	NA	1	1	FALSE	NA	NA	0	C	coding	510	1530	80	1609	15	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4847_CONTIG_1	4	+	2201	15	full-splice_match	ALB	ENST00000295897	2263	15	48	14	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6032_CONTIG_1	4	+	2025	15	full-splice_match	ALB	ENST00000295897	2263	15	42	196	multi-exon	FALSE	canonical	0	0	1900	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	48	1874	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1560_CONTIG_1	5	+	1793	10	novel_in_catalog	RGS14	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1111	2	NA	0	0	FALSE	NA	NA	0	C	coding	402	1206	106	1311	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_637_CONTIG_1	3	-	1331	5	full-splice_match	RHOA	ENST00000418115	2031	5	213	487	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	193	579	173	751	45	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1768_CONTIG_1	1	+	1482	2	novel_in_catalog	VPS13D	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	74	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	5	0.216	0.784	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5652_CONTIG_1	20	+	1794	15	full-splice_match	LBP	ENST00000217407	1961	15	126	41	multi-exon	FALSE	canonical	0	0	1436	2	NA	0	0	FALSE	NA	NA	0	C	coding	481	1443	36	1478	40	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3836_CONTIG_1	5	+	398	3	full-splice_match	UQCRQ	ENST00000378670	839	3	91	350	multi-exon	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6433_CONTIG_1	11	+	475	4	full-splice_match	APOC3	ENST00000227667	550	4	15	60	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_16_CONTIG_1	4	-	1564	10	full-splice_match	FGG	ENST00000404648	1760	10	193	3	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4838_CONTIG_1	4	-	1520	10	full-splice_match	FGG	ENST00000404648	1760	10	193	47	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7893_CONTIG_1	17	-	1225	10	incomplete-splice_match	NCOR1	ENST00000411510	1883	15	-9	667	internal_fragment	FALSE	canonical	0	0	185	2	NA	0	0	FALSE	NA	NA	0	A	coding	323	969	256	1224	45	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_921_CONTIG_1	4	+	2020	15	full-splice_match	ALB	ENST00000295897	2263	15	50	193	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1693_CONTIG_1	X	-	1222	6	novel_in_catalog	DHRSX	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	152	2	NA	0	0	FALSE	NA	NA	0	A	coding	307	921	44	964	45	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4322_CONTIG_1	19	-	1229	8	full-splice_match	POLR2E	ENST00000215587	1504	8	241	34	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	210	630	44	673	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3210_CONTIG_1	1	+	923	4	full-splice_match	SNAPIN	ENST00000368685	1030	4	63	44	multi-exon	FALSE	canonical	0	0	336	2	NA	0	0	FALSE	NA	NA	0	A	coding	136	408	28	435	30	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2709_CONTIG_1	14	-	1327	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	77	multi-exon	FALSE	canonical	0	0	43	2	NA	2	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	5	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2595_CONTIG_1	19	-	1457	4	novel_in_catalog	CYP2A6	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	104	2	NA	1	0	FALSE	NA	NA	0	C	coding	169	507	96	602	30	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4899_CONTIG_1	5	-	451	5	full-splice_match	RPS14	ENST00000401695	1599	5	10	1138	multi-exon	FALSE	canonical	0	0	35	2	NA	0	0	FALSE	NA	NA	0	C	coding	138	414	38	451	25	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7140_CONTIG_1	4	+	2008	15	full-splice_match	ALB	ENST00000295897	2263	15	50	205	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_819_CONTIG_1	10	+	1669	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	-2	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_362_CONTIG_1	4	+	1919	15	full-splice_match	ALB	ENST00000295897	2263	15	50	294	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4610_CONTIG_1	4	+	2031	15	full-splice_match	ALB	ENST00000295897	2263	15	48	184	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_565_CONTIG_1	3	-	499	5	incomplete-splice_match	CCNL1	ENST00000470121	1889	13	1145	245	5prime_fragment	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3983_CONTIG_1	1	-	453	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	25	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1687_CONTIG_1	15	-	1522	5	incomplete-splice_match	GATM	ENST00000396659	2597	9	1025	50	5prime_fragment	FALSE	canonical	0	0	128	2	NA	2	1	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5457_CONTIG_1	4	-	1540	10	full-splice_match	FGG	ENST00000404648	1760	10	193	27	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3519_CONTIG_1	1	+	821	2	full-splice_match	APCS	ENST00000255040	926	2	1	104	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1213_CONTIG_1	16	+	848	5	full-splice_match	FAM195A	ENST00000307650	946	5	98	0	multi-exon	FALSE	canonical	0	0	493	2	NA	1	0	FALSE	NA	NA	0	A	coding	160	480	82	561	10	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3701_CONTIG_1	3	-	1176	11	incomplete-splice_match	ITIH4	ENST00000406595	2872	22	1687	9	5prime_fragment	FALSE	canonical	0	0	22	2	NA	0	0	FALSE	NA	NA	0	B	coding	310	930	114	1043	10	0.666	0.334	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4296_CONTIG_1	4	+	340	3	incomplete-splice_match	ALB	ENST00000514786	577	5	180	57	internal_fragment	FALSE	canonical	0	0	271	2	NA	0	0	FALSE	NA	NA	0	C	coding	73	219	120	338	30	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_370_CONTIG_1	7	-	1732	2	genic_intron	novelGene_465	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	25	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.154	0.846	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_700_CONTIG_1	7	-	420	3	full-splice_match	TOMM7	ENST00000358435	778	3	9	349	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3266_CONTIG_1	4	+	1105	9	incomplete-splice_match	ALB	ENST00000509063	1911	14	449	357	internal_fragment	FALSE	canonical	0	0	1003	2	NA	1	0	FALSE	NA	NA	0	C	coding	364	1092	14	1105	15	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3776_CONTIG_1	21	-	1798	15	full-splice_match	CCT8	ENST00000286788	2005	15	133	74	multi-exon	FALSE	canonical	0	0	134	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1264_CONTIG_1	11	+	1824	8	full-splice_match	SERPING1	ENST00000278407	2002	8	167	11	multi-exon	FALSE	canonical	0	0	1309	2	NA	0	0	FALSE	NA	NA	0	C	coding	500	1500	61	1560	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7931_CONTIG_1	9	+	748	6	full-splice_match	ORM1	ENST00000259396	802	6	42	12	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_689_CONTIG_1	14	-	976	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	486	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	310	930	47	976	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4651_CONTIG_1	4	-	322	2	novel_in_catalog	ADH4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5676_CONTIG_1	6	-	1744	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	3	multi-exon	FALSE	canonical	0	0	33	2	NA	1	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	15	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7899_CONTIG_1	9	+	759	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	20	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_24_CONTIG_1	19	-	534	4	incomplete-splice_match	A1BG	ENST00000263100	1722	8	7	1181	internal_fragment	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	159	477	56	532	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7341_CONTIG_1	22	+	1525	13	full-splice_match	ADSL	ENST00000216194	1993	13	26	442	multi-exon	FALSE	canonical	0	0	1398	2	NA	1	0	FALSE	NA	NA	0	A	coding	459	1377	106	1482	35	0.386	0.614	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6130_CONTIG_1	3	+	935	9	novel_not_in_catalog	TF	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	814	2	NA	0	0	FALSE	NA	NA	0	C	coding	275	825	53	877	15	0.242	0.758	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8174_CONTIG_1	19	+	483	4	full-splice_match	APOC2	ENST00000252490	717	4	65	169	multi-exon	FALSE	canonical	0	0	253	2	NA	0	0	FALSE	NA	NA	0	C	coding	101	303	39	341	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2888_CONTIG_1	19	-	855	6	full-splice_match	ETFB	ENST00000309244	900	6	30	15	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	255	765	63	827	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_644_CONTIG_1	17	-	441	4	incomplete-splice_match	CWC25	ENST00000582713	1127	7	141	545	internal_fragment	FALSE	canonical	0	0	118	2	NA	0	0	FALSE	NA	NA	0	A	coding	119	357	84	440	75	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4501_CONTIG_1	19	+	1282	5	novel_not_in_catalog	ANGPTL4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	703	2	NA	0	0	TRUE	NA	NA	0	C	coding	189	567	316	882	15	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6658_CONTIG_1	17	-	1325	14	novel_not_in_catalog	AARSD1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	45	2	NA	0	0	TRUE	NA	NA	0	A	coding	412	1236	7	1242	15	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8356_CONTIG_1	7	-	1118	3	incomplete-splice_match	ACTB	ENST00000425660	1845	7	704	23	5prime_fragment	FALSE	canonical	0	0	223	2	NA	2	0	FALSE	NA	NA	0	C	coding	149	447	100	546	45	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8719_CONTIG_1	7	+	1418	11	novel_not_in_catalog	CCM2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1361	2	NA	0	0	TRUE	NA	NA	0	A	coding	428	1284	93	1376	20	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4765_CONTIG_1	4	+	303	3	incomplete-splice_match	ALB	ENST00000484992	693	4	390	0	internal_fragment	FALSE	canonical	0	0	219	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8332_CONTIG_1	4	+	2025	15	full-splice_match	ALB	ENST00000295897	2263	15	48	190	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	50	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_770_CONTIG_1	12	-	1163	6	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	121	2	NA	1	0	TRUE	NA	NA	0	C	coding	331	993	78	1070	35	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7715_CONTIG_1	11	-	1164	10	novel_not_in_catalog	HPX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	110	2	NA	3	0	TRUE	NA	NA	0	C	coding	359	1077	28	1104	25	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8643_CONTIG_1	3	+	1903	7	full-splice_match	HRG	ENST00000232003	2015	7	62	50	multi-exon	FALSE	canonical	0	0	759	2	NA	0	0	FALSE	NA	NA	0	C	coding	525	1575	19	1593	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6626_CONTIG_1	14	+	1705	14	novel_in_catalog	ASPG	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1520	2	NA	0	0	FALSE	NA	NA	0	B	coding	523	1569	16	1584	20	0.854	0.146	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6849_CONTIG_1	4	-	819	5	novel_not_in_catalog	ADH1B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	235	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_191_CONTIG_1	17	-	1485	2	intergenic	novelGene_178	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	214	2	NA	4	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.168	0.832	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3166_CONTIG_1	16	-	1909	14	full-splice_match	CES1	ENST00000360526	2006	14	60	37	multi-exon	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	568	1704	44	1747	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3743_CONTIG_1	17	-	969	7	incomplete-splice_match	APOH	ENST00000205948	1176	8	7	200	internal_fragment	FALSE	canonical	0	0	95	2	NA	0	0	FALSE	NA	NA	0	C	coding	312	936	32	967	30	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4032_CONTIG_1	1	+	2154	6	novel_not_in_catalog	YTHDF2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	2005	2	NA	0	0	FALSE	NA	NA	0	A	coding	589	1767	177	1943	30	0.272	0.728	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3822_CONTIG_1	21	+	880	5	full-splice_match	SOD1	ENST00000270142	966	5	71	15	multi-exon	FALSE	canonical	0	0	434	2	NA	0	0	FALSE	NA	NA	0	C	coding	154	462	78	539	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8130_CONTIG_1	4	-	1462	10	full-splice_match	FGG	ENST00000404648	1760	10	196	102	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	45	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2678_CONTIG_1	3	+	1523	7	full-splice_match	AHSG	ENST00000411641	1711	7	139	49	multi-exon	FALSE	canonical	0	0	839	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	81	1181	40	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6416_CONTIG_1	22	+	2203	5	full-splice_match	SERPIND1	ENST00000215727	2437	5	234	0	multi-exon	FALSE	canonical	0	0	1357	2	NA	1	0	FALSE	NA	NA	0	C	coding	499	1497	50	1546	25	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5617_CONTIG_1	2	+	1173	9	novel_in_catalog	HADHB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	666	2	NA	1	0	FALSE	NA	NA	0	C	coding	283	849	37	885	35	0.116	0.884	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7525_CONTIG_1	16	-	637	7	novel_not_in_catalog	EIF3CL	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	54	2	NA	0	0	TRUE	NA	NA	0	B	coding	170	510	85	594	35	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1205_CONTIG_1	19	-	725	2	full-splice_match	GADD45GIP1	ENST00000316939	743	2	13	5	multi-exon	FALSE	canonical	0	0	361	2	NA	0	0	FALSE	NA	NA	0	A	coding	222	666	12	677	20	0.124	0.876	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3237_CONTIG_1	4	+	1689	12	incomplete-splice_match	ALB	ENST00000295897	2263	15	383	191	internal_fragment	FALSE	canonical	0	0	1559	2	NA	0	0	FALSE	NA	NA	0	C	coding	499	1497	37	1533	45	0.22	0.78	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6573_CONTIG_1	9	+	1503	15	full-splice_match	ASS1	ENST00000352480	1564	15	33	28	multi-exon	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	40	1275	40	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1233_CONTIG_1	1	+	901	2	full-splice_match	APCS	ENST00000255040	926	2	1	24	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	50	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6303_CONTIG_1	19	+	1162	4	full-splice_match	APOE	ENST00000252486	1208	4	42	4	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5898_CONTIG_1	15	+	944	4	full-splice_match	B2M	ENST00000558401	1715	4	36	735	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_685_CONTIG_1	3	+	2282	17	full-splice_match	TF	ENST00000402696	2968	17	437	249	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	65	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4129_CONTIG_1	4	-	2207	5	full-splice_match	FGA	ENST00000403106	2248	5	22	19	multi-exon	FALSE	canonical	0	0	111	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	58	1989	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6655_CONTIG_1	1	-	1270	11	full-splice_match	TCEA3	ENST00000450454	1559	11	-18	307	multi-exon	FALSE	canonical	0	0	194	2	NA	0	0	FALSE	NA	NA	0	C	coding	348	1044	126	1169	20	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_658_CONTIG_1	8	-	1629	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1102	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	35	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4088_CONTIG_1	8	+	1126	4	full-splice_match	LY6E	ENST00000429120	1173	4	46	1	multi-exon	FALSE	canonical	0	0	282	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	111	503	5	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7170_CONTIG_1	20	+	1847	7	novel_not_in_catalog	PCK1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	834	2	NA	2	1	TRUE	NA	NA	0	C	coding	384	1152	135	1286	25	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5574_CONTIG_1	10	-	824	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	253	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_143_CONTIG_1	7	-	1155	4	full-splice_match	AZGP1	ENST00000292401	1307	4	126	26	multi-exon	FALSE	canonical	0	0	87	2	NA	1	0	FALSE	NA	NA	0	C	coding	295	885	21	905	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4767_CONTIG_1	11	-	892	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	7	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2503_CONTIG_1	4	+	1573	8	full-splice_match	FGB	ENST00000302068	1975	8	55	347	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_966_CONTIG_1	4	+	2046	15	full-splice_match	ALB	ENST00000295897	2263	15	48	169	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_840_CONTIG_1	16	-	1639	2	full-splice_match	IGFALS	ENST00000215539	2116	2	63	414	multi-exon	FALSE	canonical	0	0	64	2	NA	0	0	FALSE	NA	NA	0	C	coding	530	1590	49	1638	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1163_CONTIG_1	1	-	1653	8	full-splice_match	TFB2M	ENST00000366514	1848	8	70	125	multi-exon	FALSE	canonical	0	0	429	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2396_CONTIG_1	2	-	2160	8	novel_in_catalog	HSPD1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	638	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.552	0.448	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1805_CONTIG_1	15	-	986	4	full-splice_match	MRPL46	ENST00000312475	1019	4	29	4	multi-exon	FALSE	canonical	0	0	241	2	NA	0	0	FALSE	NA	NA	0	C	coding	210	630	221	850	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8555_CONTIG_1	17	-	1081	8	full-splice_match	APOH	ENST00000205948	1176	8	24	71	multi-exon	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	345	1035	15	1049	15	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1428_CONTIG_1	9	+	1425	7	incomplete-splice_match	PMPCA	ENST00000399219	1987	12	555	7	internal_fragment	FALSE	canonical	0	0	766	2	NA	0	0	FALSE	NA	NA	0	B	coding	275	825	109	933	10	0.624	0.376	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1612_CONTIG_1	19	-	1191	10	full-splice_match	ECH1	ENST00000221418	1411	10	220	0	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	328	984	14	997	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4306_CONTIG_1	19	-	394	5	novel_not_in_catalog	UQCR11	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	56	2	NA	2	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2434_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1349_CONTIG_1	6	-	758	7	full-splice_match	GSTA1	ENST00000334575	1019	7	94	167	multi-exon	FALSE	canonical	0	0	32	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	63	728	40	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8053_CONTIG_1	11	-	761	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	439	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6430_CONTIG_1	19	+	893	5	full-splice_match	ANGPTL4	ENST00000594348	1021	5	308	-180	multi-exon	FALSE	canonical	0	0	506	2	NA	0	0	FALSE	NA	NA	0	C	coding	89	267	347	613	5	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5871_CONTIG_1	14	-	812	5	novel_not_in_catalog	SERPINA1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	37	2	NA	0	0	TRUE	NA	NA	0	C	coding	257	771	42	812	15	0.964	0.036	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_130_CONTIG_1	5	-	2051	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	5	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3106_CONTIG_1	19	-	536	4	full-splice_match	NDUFA11	ENST00000308961	539	4	0	3	multi-exon	FALSE	canonical	0	0	145	2	NA	0	0	FALSE	NA	NA	0	A	coding	141	423	49	471	10	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3014_CONTIG_1	9	+	1037	5	full-splice_match	CLTA	ENST00000345519	1073	5	20	16	multi-exon	FALSE	canonical	0	0	599	2	NA	0	0	FALSE	NA	NA	0	A	coding	218	654	115	768	25	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8207_CONTIG_1	12	-	2118	10	novel_not_in_catalog	C1R	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	59	2	NA	3	0	TRUE	NA	NA	0	C	coding	582	1746	58	1803	45	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2921_CONTIG_1	11	+	1314	7	novel_not_in_catalog	PNPLA2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	696	2	NA	1	0	TRUE	NA	NA	0	A	coding	268	804	230	1033	25	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7472_CONTIG_1	4	-	1805	11	full-splice_match	NELFA	ENST00000411638	2199	11	3	391	multi-exon	FALSE	canonical	0	0	223	2	NA	0	0	FALSE	NA	NA	0	A	coding	528	1584	14	1597	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1011_CONTIG_1	4	+	310	3	incomplete-splice_match	ALB	ENST00000484992	693	4	236	147	internal_fragment	FALSE	canonical	0	0	275	2	NA	0	0	FALSE	NA	NA	0	C	coding	87	261	48	308	55	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2917_CONTIG_1	15	+	803	2	genic_intron	novelGene_666	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	74	2	NA	0	0	FALSE	NA	NA	0	A	coding	142	426	95	520	50	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3985_CONTIG_1	12	+	1498	5	full-splice_match	HSD17B6	ENST00000322165	1512	5	-4	18	multi-exon	FALSE	canonical	0	0	850	2	NA	1	0	FALSE	NA	NA	0	C	coding	317	951	115	1065	5	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_732_CONTIG_1	4	-	1453	10	full-splice_match	FGG	ENST00000404648	1760	10	193	114	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1984_CONTIG_1	4	-	1559	10	full-splice_match	FGG	ENST00000404648	1760	10	190	11	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	51	1361	40	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8443_CONTIG_1	6	+	1488	10	incomplete-splice_match	PLG	ENST00000308192	2741	19	1224	29	internal_fragment	FALSE	canonical	0	0	1110	2	NA	0	0	FALSE	NA	NA	0	C	coding	407	1221	49	1269	35	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5111_CONTIG_1	14	-	1007	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	456	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	320	960	48	1007	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3785_CONTIG_1	16	+	1060	3	full-splice_match	HP	ENST00000566821	3024	3	1900	64	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	20	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5481_CONTIG_1	10	+	449	2	full-splice_match	CYP2E1	ENST00000469258	732	2	250	33	multi-exon	FALSE	canonical	0	0	143	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6115_CONTIG_1	15	+	942	4	full-splice_match	B2M	ENST00000558401	1715	4	36	737	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6671_CONTIG_1	19	+	1709	2	full-splice_match	ZFP36	ENST00000248673	1745	2	0	36	multi-exon	FALSE	canonical	0	0	82	2	NA	1	0	FALSE	NA	NA	0	C	coding	332	996	41	1036	20	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1482_CONTIG_1	13	-	840	6	full-splice_match	TPT1	ENST00000530705	1028	6	187	1	multi-exon	FALSE	canonical	0	0	142	2	NA	1	0	FALSE	NA	NA	0	C	coding	172	516	115	630	25	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1620_CONTIG_1	5	-	2052	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	4	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.268	0.732	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4040_CONTIG_1	3	+	2155	11	full-splice_match	ALAS1	ENST00000469224	2125	11	75	-105	multi-exon	FALSE	canonical	0	0	1889	2	NA	0	0	FALSE	NA	NA	0	C	coding	640	1920	128	2047	45	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6562_CONTIG_1	4	-	1463	10	full-splice_match	FGG	ENST00000404648	1760	10	196	101	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	45	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7016_CONTIG_1	19	+	517	3	full-splice_match	APOC4	ENST00000592954	615	3	36	62	multi-exon	FALSE	canonical	0	0	222	2	NA	0	0	FALSE	NA	NA	0	C	coding	127	381	5	385	65	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_768_CONTIG_1	2	+	1633	6	novel_not_in_catalog	UGT1A4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	600	2	NA	1	0	TRUE	NA	NA	0	C	coding	272	816	80	895	25	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3848_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1032_CONTIG_1	17	+	1982	5	novel_not_in_catalog	ALKBH5	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	885	2	NA	4	1	TRUE	NA	NA	0	B	coding	53	159	434	592	65	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_247_CONTIG_1	17	-	1597	8	full-splice_match	VTN	ENST00000226218	2149	8	516	36	multi-exon	FALSE	canonical	0	0	167	2	NA	0	0	FALSE	NA	NA	0	C	coding	478	1434	104	1537	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3239_CONTIG_1	4	+	1913	15	full-splice_match	ALB	ENST00000295897	2263	15	48	302	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	70	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_614_CONTIG_1	19	+	738	6	full-splice_match	RPS5	ENST00000196551	740	6	0	2	multi-exon	FALSE	canonical	0	0	618	2	NA	0	0	FALSE	NA	NA	0	A	coding	204	612	73	684	5	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4067_CONTIG_1	4	+	1758	8	full-splice_match	FGB	ENST00000302068	1975	8	57	160	multi-exon	FALSE	canonical	0	0	1250	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3556_CONTIG_1	15	+	929	4	full-splice_match	B2M	ENST00000558401	1715	4	36	750	multi-exon	FALSE	canonical	0	0	408	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_385_CONTIG_1	7	-	1937	8	novel_in_catalog	PDIA4	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	207	2	NA	2	0	FALSE	NA	NA	0	B	coding	367	1101	567	1667	30	0.592	0.408	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2463_CONTIG_1	19	-	1157	10	full-splice_match	ECH1	ENST00000221418	1411	10	220	34	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	328	984	14	997	45	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7753_CONTIG_1	4	+	740	8	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	577	2	NA	0	0	TRUE	NA	NA	0	C	coding	170	510	42	551	35	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5475_CONTIG_1	15	+	943	4	full-splice_match	B2M	ENST00000558401	1715	4	36	736	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_181_CONTIG_1	9	-	1960	3	full-splice_match	BAAT	ENST00000395051	2252	3	12	280	multi-exon	FALSE	canonical	0	0	525	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7189_CONTIG_1	20	+	1501	3	novel_in_catalog	LBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	274	2	NA	0	0	FALSE	NA	NA	0	C	coding	123	369	36	404	90	0.01	0.99	POS	TRUE	Artifact
SAMPLE_1_MOLECULE_1786_CONTIG_1	X	+	1020	6	incomplete-splice_match	RGN	ENST00000457380	2019	7	857	142	internal_fragment	FALSE	canonical	0	0	745	2	NA	0	0	FALSE	NA	NA	0	A	coding	227	681	113	793	35	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_160_CONTIG_1	1	+	1871	16	full-splice_match	FGGY	ENST00000303721	1976	16	103	2	multi-exon	FALSE	canonical	0	0	1645	2	NA	1	0	FALSE	NA	NA	0	C	coding	551	1653	72	1724	35	0.214	0.786	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_804_CONTIG_1	14	+	1311	9	full-splice_match	AHSA1	ENST00000216479	1402	9	36	55	multi-exon	TRUE	canonical	0	0	968	2	NA	0	0	FALSE	NA	NA	0	A	coding	338	1014	125	1138	15	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7837_CONTIG_1	4	+	1433	9	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1153	2	NA	0	0	TRUE	NA	NA	0	C	coding	272	816	567	1382	30	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2593_CONTIG_1	10	+	1400	5	incomplete-splice_match	GHITM	ENST00000372134	2128	9	595	133	internal_fragment	FALSE	canonical	0	0	551	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7220_CONTIG_1	1	+	823	2	full-splice_match	APCS	ENST00000255040	926	2	1	102	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	coding	223	669	97	765	45	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_715_CONTIG_1	4	-	1390	9	full-splice_match	ADH1A	ENST00000209668	1499	9	81	28	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	34	1158	30	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1331_CONTIG_1	10	+	1120	7	novel_in_catalog	CCAR1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	998	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	35	0.582	0.418	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5754_CONTIG_1	22	+	320	3	incomplete-splice_match	TNRC6B	ENST00000441751	415	4	2	93	3prime_fragment	FALSE	canonical	0	0	254	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6645_CONTIG_1	12	+	1811	9	novel_not_in_catalog	CLSTN3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1319	2	NA	0	0	TRUE	NA	NA	0	A	coding	268	804	269	1072	15	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6493_CONTIG_1	6	-	1357	7	novel_not_in_catalog	DXO	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	canonical	0	0	207	2	NA	0	0	FALSE	NA	NA	0	A	coding	361	1083	214	1296	15	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2779_CONTIG_1	9	+	719	6	full-splice_match	ORM1	ENST00000259396	802	6	42	41	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3213_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	50	165	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1878_CONTIG_1	10	-	413	4	incomplete-splice_match	RBP4	ENST00000371469	814	6	227	174	5prime_fragment	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	131	393	6	398	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_386_CONTIG_1	11	-	715	3	full-splice_match	MRPL17	ENST00000288937	1969	3	101	1153	multi-exon	FALSE	canonical	0	0	178	2	NA	0	0	FALSE	NA	NA	0	A	coding	124	372	158	529	40	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3247_CONTIG_1	4	+	730	6	incomplete-splice_match	ALB	ENST00000509063	1911	14	217	964	internal_fragment	FALSE	canonical	0	0	650	2	NA	0	0	FALSE	NA	NA	0	C	coding	197	591	138	728	35	0.148	0.852	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4644_CONTIG_1	16	+	1381	7	full-splice_match	HP	ENST00000355906	1443	7	31	31	multi-exon	FALSE	canonical	0	0	469	2	NA	0	0	FALSE	NA	NA	0	C	coding	406	1218	28	1245	45	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4871_CONTIG_1	2	+	954	7	incomplete-splice_match	FAHD2A	ENST00000447036	1366	9	441	-29	internal_fragment	FALSE	canonical	0	0	723	2	NA	0	0	FALSE	NA	NA	0	B	coding	249	747	37	783	10	0.658	0.342	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_967_CONTIG_1	14	+	817	5	novel_not_in_catalog	AL163636.6	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	794	2	NA	0	0	TRUE	NA	NA	0	A	coding	147	441	159	599	50	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2241_CONTIG_1	4	-	1449	9	full-splice_match	ADH1C	ENST00000515683	1740	9	281	10	multi-exon	FALSE	canonical	0	0	89	2	NA	0	0	FALSE	NA	NA	0	C	coding	166	498	699	1196	25	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8647_CONTIG_1	9	-	628	6	incomplete-splice_match	AMBP	ENST00000265132	1434	10	725	81	5prime_fragment	FALSE	canonical	0	0	94	2	NA	0	0	FALSE	NA	NA	0	C	coding	171	513	82	594	5	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6504_CONTIG_1	19	+	625	3	full-splice_match	APOE	ENST00000425718	923	3	291	7	multi-exon	FALSE	canonical	0	0	210	2	NA	0	0	FALSE	NA	NA	0	C	coding	136	408	218	625	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1806_CONTIG_1	9	-	642	4	incomplete-splice_match	RPS6	ENST00000315377	863	6	251	-30	5prime_fragment	FALSE	canonical	0	0	203	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	41	601	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5289_CONTIG_1	1	-	2111	5	full-splice_match	AGT	ENST00000366667	2291	5	171	9	multi-exon	FALSE	canonical	0	0	41	2	NA	1	0	FALSE	NA	NA	0	C	coding	485	1455	45	1499	30	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6860_CONTIG_1	7	+	1923	13	novel_in_catalog	CCT6A	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1504	2	NA	1	0	FALSE	NA	NA	0	C	coding	414	1242	214	1455	40	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4919_CONTIG_1	15	+	1348	12	novel_not_in_catalog	AKAP13	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	1316	2	NA	0	0	FALSE	NA	NA	0	A	coding	445	1335	14	1348	25	0.184	0.816	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1484_CONTIG_1	17	-	1145	8	full-splice_match	APOH	ENST00000205948	1176	8	15	16	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6928_CONTIG_1	10	-	1141	4	incomplete-splice_match	GOT1	ENST00000370508	1947	9	802	4	5prime_fragment	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	B	coding	126	378	88	465	35	0.512	0.488	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7041_CONTIG_1	5	-	470	5	full-splice_match	RPS14	ENST00000401695	1599	5	8	1121	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	143	429	40	468	0	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7611_CONTIG_1	10	-	774	5	novel_not_in_catalog	RBP4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	104	2	NA	2	0	TRUE	NA	NA	0	C	coding	142	426	126	551	15	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_126_CONTIG_1	16	-	617	3	full-splice_match	VKORC1	ENST00000394975	1012	3	375	20	multi-exon	FALSE	canonical	0	0	26	2	NA	1	0	FALSE	NA	NA	0	C	coding	58	174	169	342	40	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5270_CONTIG_1	2	+	911	7	full-splice_match	ATRAID	ENST00000606999	956	7	47	-2	multi-exon	FALSE	canonical	0	0	596	2	NA	2	0	FALSE	NA	NA	0	C	coding	171	513	186	698	10	0.198	0.802	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_807_CONTIG_1	17	-	1623	8	full-splice_match	VTN	ENST00000226218	2149	8	515	11	multi-exon	FALSE	canonical	0	0	168	2	NA	1	0	FALSE	NA	NA	0	C	coding	478	1434	105	1538	30	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3416_CONTIG_1	4	+	1847	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	41	multi-exon	FALSE	canonical	0	0	1357	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5899_CONTIG_1	4	-	1545	10	full-splice_match	FGG	ENST00000404648	1760	10	193	22	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4163_CONTIG_1	4	+	280	2	full-splice_match	ALB	ENST00000486939	345	2	136	-71	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2855_CONTIG_1	20	+	1069	4	full-splice_match	PCK1	ENST00000485958	581	4	266	-754	multi-exon	FALSE	canonical	0	0	272	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	236	724	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2052_CONTIG_1	X	+	714	7	full-splice_match	RPL10	ENST00000424325	2318	7	147	1457	multi-exon	FALSE	canonical	0	0	533	2	NA	0	0	FALSE	NA	NA	0	C	coding	214	642	42	683	45	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7515_CONTIG_1	4	+	2002	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1840	2	NA	0	0	TRUE	NA	NA	0	C	coding	591	1773	42	1814	35	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2262_CONTIG_1	16	+	1101	3	full-splice_match	HP	ENST00000566821	3024	3	1911	12	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6286_CONTIG_1	19	-	1553	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	211	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	20	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4069_CONTIG_1	14	+	590	2	full-splice_match	ANG	ENST00000397990	742	2	-8	160	multi-exon	FALSE	canonical	0	0	110	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	129	569	5	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1064_CONTIG_1	10	-	1920	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	-1	4	multi-exon	FALSE	canonical	0	0	264	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5930_CONTIG_1	2	+	860	5	incomplete-splice_match	CEP68	ENST00000377990	5847	7	1922	3065	internal_fragment	FALSE	canonical	0	0	559	2	NA	0	0	FALSE	NA	NA	0	A	coding	24	72	481	552	40	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5257_CONTIG_1	4	+	2054	15	full-splice_match	ALB	ENST00000295897	2263	15	50	159	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_878_CONTIG_1	11	-	895	4	full-splice_match	APOA1	ENST00000236850	1227	4	329	3	multi-exon	FALSE	canonical	0	0	17	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	38	838	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8193_CONTIG_1	3	+	540	3	novel_in_catalog	TF	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	376	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1907_CONTIG_1	9	+	730	6	full-splice_match	ORM1	ENST00000259396	802	6	42	30	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3038_CONTIG_1	4	+	1432	6	incomplete-splice_match	FGB	ENST00000302068	1975	8	508	35	internal_fragment	FALSE	canonical	0	0	799	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7539_CONTIG_1	10	-	876	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	201	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1611_CONTIG_1	9	-	1572	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	830	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	65	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6981_CONTIG_1	4	-	1565	10	full-splice_match	FGG	ENST00000404648	1760	10	193	2	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7791_CONTIG_1	2	+	1243	3	full-splice_match	ID2	ENST00000396290	1362	3	66	53	multi-exon	FALSE	canonical	0	0	529	2	NA	2	0	FALSE	NA	NA	0	C	coding	134	402	118	519	40	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1217_CONTIG_1	8	-	1499	9	full-splice_match	CLU	ENST00000560366	2841	9	107	1235	multi-exon	FALSE	canonical	0	0	49	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	82	1425	25	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2233_CONTIG_1	4	-	1252	9	novel_not_in_catalog	FGG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	128	2	NA	0	0	TRUE	NA	NA	0	C	coding	148	444	604	1047	30	0.972	0.028	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_969_CONTIG_1	4	+	2124	8	full-splice_match	FGB	ENST00000302068	1975	8	61	-210	multi-exon	FALSE	canonical	0	0	1246	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8115_CONTIG_1	1	-	742	5	full-splice_match	MASP2	ENST00000400898	726	5	-19	3	multi-exon	FALSE	canonical	0	0	50	2	NA	0	0	FALSE	NA	NA	0	C	coding	185	555	46	600	10	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1725_CONTIG_1	12	-	1348	8	full-splice_match	DCN	ENST00000393155	2133	8	77	708	multi-exon	FALSE	canonical	0	0	144	2	NA	0	0	FALSE	NA	NA	0	C	coding	359	1077	178	1254	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6282_CONTIG_1	1	-	467	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	11	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6250_CONTIG_1	2	-	1875	7	novel_not_in_catalog	YWHAQ	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	32	2	NA	0	0	TRUE	NA	NA	0	C	coding	245	735	115	849	40	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1149_CONTIG_1	6	+	1622	8	full-splice_match	HLA-E	ENST00000376630	2601	8	45	934	multi-exon	FALSE	canonical	0	0	1099	2	NA	0	0	FALSE	NA	NA	0	C	coding	358	1074	21	1094	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3465_CONTIG_1	8	+	1179	4	full-splice_match	UBE2V2	ENST00000523111	4373	4	27	3167	multi-exon	FALSE	canonical	0	0	319	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2701_CONTIG_1	20	+	1393	2	novel_in_catalog	ACSS2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	A	coding	125	375	27	401	25	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7075_CONTIG_1	17	+	546	3	full-splice_match	ANAPC11	ENST00000579978	575	3	26	3	multi-exon	FALSE	canonical	0	0	216	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2558_CONTIG_1	12	+	1053	4	full-splice_match	PEBP1	ENST00000261313	1697	4	224	420	multi-exon	FALSE	canonical	0	0	474	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	129	689	80	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6320_CONTIG_1	12	+	526	3	full-splice_match	SLC25A3	ENST00000548480	722	3	180	16	multi-exon	FALSE	canonical	0	0	201	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8671_CONTIG_1	16	+	1105	5	full-splice_match	HP	ENST00000398131	1252	5	17	130	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8090_CONTIG_1	4	+	2045	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1893	2	NA	1	0	TRUE	NA	NA	0	C	coding	356	1068	40	1107	45	0.952	0.048	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1242_CONTIG_1	1	+	799	6	novel_in_catalog	ESPN	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	591	2	NA	0	0	FALSE	NA	NA	0	B	coding	210	630	107	736	20	0.588	0.412	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5491_CONTIG_1	19	-	1319	6	incomplete-splice_match	EEF2	ENST00000309311	3164	15	1437	408	5prime_fragment	FALSE	canonical	0	0	257	2	NA	0	0	FALSE	NA	NA	0	B	coding	406	1218	9	1226	20	0.572	0.428	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4017_CONTIG_1	4	+	342	3	incomplete-splice_match	ALB	ENST00000505649	1509	11	-20	1187	internal_fragment	FALSE	canonical	0	0	321	2	NA	0	0	FALSE	NA	NA	0	C	coding	102	306	37	342	20	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5133_CONTIG_1	X	-	1788	4	full-splice_match	MORF4L2	ENST00000498064	451	4	111	-1448	multi-exon	FALSE	canonical	0	0	75	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5867_CONTIG_1	4	+	2213	15	full-splice_match	ALB	ENST00000295897	2263	15	50	0	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7777_CONTIG_1	15	+	943	4	full-splice_match	B2M	ENST00000558401	1715	4	36	736	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4378_CONTIG_1	16	+	1015	2	novel_in_catalog	HP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	169	852	10	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2519_CONTIG_1	4	-	1546	10	full-splice_match	FGG	ENST00000404648	1760	10	193	21	multi-exon	FALSE	canonical	0	0	125	2	NA	1	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2202_CONTIG_1	3	-	2399	4	full-splice_match	BCHE	ENST00000264381	2454	4	52	3	multi-exon	FALSE	canonical	0	0	107	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4_CONTIG_1	4	+	2033	15	full-splice_match	ALB	ENST00000295897	2263	15	48	182	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	65	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_978_CONTIG_1	10	+	646	5	incomplete-splice_match	ITIH2	ENST00000379587	2848	20	1497	705	internal_fragment	FALSE	canonical	0	0	600	2	NA	0	0	FALSE	NA	NA	0	B	coding	152	456	189	644	30	0.558	0.442	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7463_CONTIG_1	1	+	1314	6	full-splice_match	HSD11B1	ENST00000367027	1319	6	2	3	multi-exon	FALSE	canonical	0	0	756	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	141	971	30	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3062_CONTIG_1	X	+	385	4	incomplete-splice_match	RPL10	ENST00000436473	657	7	224	48	internal_fragment	FALSE	canonical	0	0	323	2	NA	0	0	FALSE	NA	NA	0	C	coding	109	327	57	383	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2276_CONTIG_1	12	-	936	8	full-splice_match	ZCRB1	ENST00000266529	1827	8	18	873	multi-exon	FALSE	canonical	0	0	164	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1005_CONTIG_1	2	-	924	5	fusion	AC096579.7_IGKV1-39	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	78	2	NA	1	0	TRUE	NA	NA	0	A	coding	165	495	235	729	5	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4078_CONTIG_1	2	+	410	3	incomplete-splice_match	AGXT	ENST00000472436	1034	5	-17	641	3prime_fragment	FALSE	canonical	0	0	395	2	NA	0	0	FALSE	NA	NA	0	C	coding	124	372	38	409	30	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4403_CONTIG_1	11	-	1339	10	full-splice_match	HPX	ENST00000265983	1652	10	77	236	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	438	1314	25	1338	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7609_CONTIG_1	19	-	1909	14	incomplete-splice_match	ILVBL	ENST00000534378	2067	15	196	-38	5prime_fragment	FALSE	canonical	0	0	73	2	NA	1	0	FALSE	NA	NA	0	B	coding	525	1575	58	1632	30	0.63	0.37	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4732_CONTIG_1	1	-	1295	4	incomplete-splice_match	AGT	ENST00000366667	2291	5	686	310	5prime_fragment	FALSE	canonical	0	0	385	2	NA	0	0	FALSE	NA	NA	0	C	coding	231	693	292	984	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2398_CONTIG_1	1	+	1265	6	full-splice_match	HSD11B1	ENST00000367027	1319	6	0	54	multi-exon	FALSE	canonical	0	0	758	2	NA	0	0	FALSE	NA	NA	0	C	coding	277	831	143	973	50	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7200_CONTIG_1	10	+	1206	5	incomplete-splice_match	HABP2	ENST00000542051	2972	13	1035	731	internal_fragment	FALSE	canonical	0	0	539	2	NA	0	0	FALSE	NA	NA	0	B	coding	220	660	42	701	10	0.566	0.434	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5925_CONTIG_1	4	-	1459	10	full-splice_match	FGG	ENST00000404648	1760	10	193	108	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	45	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3625_CONTIG_1	10	+	1630	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	37	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	50	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1795_CONTIG_1	9	-	1213	10	full-splice_match	AMBP	ENST00000265132	1434	10	172	49	multi-exon	FALSE	canonical	0	0	208	2	NA	0	0	FALSE	NA	NA	0	C	coding	352	1056	92	1147	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6826_CONTIG_1	6	+	1441	8	full-splice_match	ARG1	ENST00000368087	1532	8	84	7	multi-exon	FALSE	canonical	0	0	857	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2669_CONTIG_1	6	+	864	6	incomplete-splice_match	PLG	ENST00000308192	2741	19	1794	83	internal_fragment	FALSE	canonical	0	0	540	2	NA	0	0	FALSE	NA	NA	0	C	coding	207	621	79	699	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5259_CONTIG_1	7	-	649	2	full-splice_match	AZGP1	ENST00000477251	787	2	407	-269	multi-exon	FALSE	canonical	0	0	202	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3229_CONTIG_1	11	+	529	4	full-splice_match	APOC3	ENST00000227667	550	4	15	6	multi-exon	FALSE	canonical	0	0	226	2	NA	0	0	FALSE	NA	NA	0	C	coding	99	297	48	344	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6438_CONTIG_1	12	-	1116	2	genic_intron	novelGene_695	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	204	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2077_CONTIG_1	4	+	2042	15	full-splice_match	ALB	ENST00000295897	2263	15	50	171	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_422_CONTIG_1	4	+	1958	15	full-splice_match	ALB	ENST00000295897	2263	15	50	255	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6158_CONTIG_1	19	+	394	4	full-splice_match	APOC1	ENST00000252491	461	4	39	28	multi-exon	FALSE	canonical	0	0	245	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	52	300	50	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1538_CONTIG_1	4	+	1572	8	full-splice_match	FGB	ENST00000302068	1975	8	55	348	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2436_CONTIG_1	4	+	489	3	full-splice_match	FGB	ENST00000497097	574	3	1	84	multi-exon	FALSE	canonical	0	0	312	2	NA	0	0	FALSE	NA	NA	0	C	coding	161	483	7	489	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2738_CONTIG_1	7	-	1745	6	full-splice_match	ACTB	ENST00000331789	1917	6	108	64	multi-exon	FALSE	canonical	0	0	78	2	NA	2	0	FALSE	NA	NA	0	C	coding	375	1125	85	1209	15	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6461_CONTIG_1	10	-	895	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	182	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6415_CONTIG_1	4	+	2023	15	full-splice_match	ALB	ENST00000295897	2263	15	50	190	multi-exon	FALSE	canonical	0	0	1892	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	50	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6012_CONTIG_1	11	+	2469	16	novel_in_catalog	ATG13	novel	NA	NA	NA	NA	combination_of_known_junctions	TRUE	canonical	0	0	1687	2	NA	2	0	FALSE	NA	NA	0	A	coding	480	1440	323	1762	15	0.532	0.468	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6868_CONTIG_1	2	+	1598	9	novel_in_catalog	AOX1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	895	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.542	0.458	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6106_CONTIG_1	20	+	1766	3	genic_intron	novelGene_260	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	115	2	NA	2	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5130_CONTIG_1	4	+	2024	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1966	2	NA	1	0	TRUE	NA	NA	0	C	coding	578	1734	207	1940	15	0.976	0.024	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1559_CONTIG_1	9	-	1309	4	novel_not_in_catalog	BAAT	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	154	2	NA	0	0	FALSE	NA	NA	0	C	coding	239	717	214	930	25	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2923_CONTIG_1	19	-	1767	6	full-splice_match	ZNF561	ENST00000302851	4693	6	171	2755	multi-exon	FALSE	canonical	0	0	67	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4811_CONTIG_1	19	+	589	6	incomplete-splice_match	PPAN	ENST00000393793	1575	11	128	858	internal_fragment	FALSE	canonical	0	0	526	2	NA	0	0	FALSE	NA	NA	0	A	coding	164	492	96	587	20	0.18	0.82	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7089_CONTIG_1	2	-	408	4	full-splice_match	FABP1	ENST00000295834	546	4	54	84	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	121	363	46	408	50	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4345_CONTIG_1	4	+	1705	6	full-splice_match	UGT2B7	ENST00000305231	1887	6	-1	183	multi-exon	FALSE	canonical	0	0	1357	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7110_CONTIG_1	10	+	531	6	full-splice_match	RPS24	ENST00000360830	514	6	-20	3	multi-exon	FALSE	canonical	0	0	451	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	40	429	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5273_CONTIG_1	15	-	1741	6	incomplete-splice_match	GATM	ENST00000396659	2597	9	854	2	5prime_fragment	FALSE	canonical	0	0	161	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3418_CONTIG_1	10	+	1208	7	incomplete-splice_match	CYP2E1	ENST00000421586	1068	8	133	-273	internal_fragment	FALSE	canonical	0	0	903	2	NA	0	0	FALSE	NA	NA	0	C	coding	356	1068	18	1085	60	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2144_CONTIG_1	4	+	1971	16	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1829	2	NA	1	0	TRUE	NA	NA	0	C	coding	588	1764	40	1803	65	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_3353_CONTIG_1	4	+	1421	11	full-splice_match	ALB	ENST00000511370	1519	11	23	75	multi-exon	FALSE	canonical	0	0	1363	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	474	1337	15	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5227_CONTIG_1	4	-	1575	9	full-splice_match	FGG	ENST00000336098	1659	9	-5	89	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	45	1403	40	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_332_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	447	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_169_CONTIG_1	19	-	487	2	novel_not_in_catalog	C3	novel	NA	NA	NA	NA	not any annotated donor/acceptor	FALSE	non_canonical	0	0	313	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	15	0.992	0.008	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5942_CONTIG_1	17	-	1787	6	full-splice_match	MFAP4	ENST00000299610	1873	6	50	36	multi-exon	FALSE	canonical	0	0	41	2	NA	0	0	FALSE	NA	NA	0	A	coding	255	765	36	800	70	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3097_CONTIG_1	4	+	1435	11	full-splice_match	ALB	ENST00000511370	1519	11	112	-28	multi-exon	FALSE	canonical	0	0	1274	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	385	1248	35	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1273_CONTIG_1	GL000220.1	+	684	2	genic	RNA18S5	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	20	2	NA	1	1	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6851_CONTIG_1	14	+	1515	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	60	multi-exon	FALSE	canonical	0	0	1133	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3358_CONTIG_1	6	+	1410	8	full-splice_match	ARG1	ENST00000368087	1532	8	85	37	multi-exon	FALSE	canonical	0	0	856	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6097_CONTIG_1	4	-	1544	10	full-splice_match	FGG	ENST00000404648	1760	10	193	23	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1659_CONTIG_1	14	-	1041	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	422	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	331	993	48	1040	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7212_CONTIG_1	16	+	1202	5	full-splice_match	HP	ENST00000398131	1252	5	17	33	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8548_CONTIG_1	15	+	1496	10	full-splice_match	IDH3A	ENST00000441490	1037	10	-14	-445	multi-exon	FALSE	canonical	0	0	929	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4632_CONTIG_1	12	-	1728	2	full-splice_match	SDS	ENST00000546785	576	2	4	-1156	multi-exon	FALSE	canonical	0	0	116	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6521_CONTIG_1	9	-	580	6	incomplete-splice_match	RPL12	ENST00000361436	633	7	0	53	internal_fragment	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	164	492	89	580	25	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3218_CONTIG_1	17	-	1305	9	full-splice_match	ASGR1	ENST00000269299	1504	9	198	1	multi-exon	FALSE	canonical	0	0	177	2	NA	2	0	FALSE	NA	NA	0	C	coding	291	873	203	1075	10	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1496_CONTIG_1	12	+	1973	13	full-splice_match	ALDH2	ENST00000261733	2018	13	29	16	multi-exon	FALSE	canonical	0	0	1553	2	NA	1	0	FALSE	NA	NA	0	C	coding	517	1551	33	1583	35	0.15	0.85	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4196_CONTIG_1	9	-	1607	7	novel_not_in_catalog	FBP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	378	2	NA	0	0	FALSE	NA	NA	0	C	coding	240	720	209	928	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5633_CONTIG_1	4	+	2171	8	full-splice_match	FGB	ENST00000302068	1975	8	63	-259	multi-exon	FALSE	canonical	0	0	1244	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4154_CONTIG_1	17	-	1830	6	full-splice_match	ACTG1	ENST00000331925	1994	6	78	86	multi-exon	FALSE	canonical	0	0	63	2	NA	2	0	FALSE	NA	NA	0	C	coding	375	1125	70	1194	10	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2457_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8531_CONTIG_1	4	+	1626	8	full-splice_match	FGB	ENST00000302068	1975	8	56	293	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8134_CONTIG_1	7	-	1078	3	incomplete-splice_match	ACTB	ENST00000425660	1845	7	772	-5	5prime_fragment	FALSE	canonical	0	0	155	2	NA	1	0	FALSE	NA	NA	0	C	coding	149	447	32	478	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8191_CONTIG_1	9	-	893	3	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	782	776	5prime_fragment	FALSE	canonical	0	0	142	2	NA	0	0	FALSE	NA	NA	0	C	coding	132	396	40	435	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1161_CONTIG_1	10	+	1627	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	40	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5926_CONTIG_1	1	-	2049	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-15	394	multi-exon	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	coding	508	1524	66	1589	40	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2098_CONTIG_1	4	+	1326	9	full-splice_match	OCIAD1	ENST00000264312	1414	9	84	4	multi-exon	FALSE	canonical	0	0	806	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3789_CONTIG_1	9	-	1603	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	799	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	15	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8462_CONTIG_1	3	+	2091	18	full-splice_match	TBC1D23	ENST00000344949	3656	18	-6	1571	multi-exon	FALSE	canonical	0	0	1997	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8156_CONTIG_1	1	-	1989	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-15	454	multi-exon	FALSE	canonical	0	0	169	2	NA	0	0	FALSE	NA	NA	0	C	coding	508	1524	66	1589	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3372_CONTIG_1	14	+	1579	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	14	-4	multi-exon	FALSE	canonical	0	0	1133	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	66	1334	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1361_CONTIG_1	X	-	1804	4	full-splice_match	MORF4L2	ENST00000360458	1824	4	-3	23	multi-exon	FALSE	canonical	0	0	79	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1314_CONTIG_1	4	+	1573	8	full-splice_match	FGB	ENST00000302068	1975	8	55	347	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	40	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1424_CONTIG_1	19	+	959	7	full-splice_match	PSMD8	ENST00000602911	1330	7	25	346	multi-exon	FALSE	canonical	0	0	733	2	NA	0	0	FALSE	NA	NA	0	A	coding	287	861	8	868	5	0.236	0.764	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4079_CONTIG_1	12	-	290	3	incomplete-splice_match	RPLP0	ENST00000550856	1003	7	128	585	internal_fragment	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7248_CONTIG_1	19	+	1924	7	novel_in_catalog	ZNF446	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	877	2	NA	0	0	FALSE	NA	NA	0	A	coding	450	1350	76	1425	30	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1400_CONTIG_1	3	+	746	4	full-splice_match	RPL15	ENST00000413699	2053	4	24	1283	multi-exon	FALSE	canonical	0	0	404	2	NA	0	0	FALSE	NA	NA	0	C	coding	204	612	96	707	30	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_504_CONTIG_1	8	-	1231	3	novel_not_in_catalog	FGL1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	81	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	55	0.994	0.006	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2592_CONTIG_1	4	+	1891	8	full-splice_match	FGB	ENST00000302068	1975	8	63	21	multi-exon	FALSE	canonical	0	0	1244	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7108_CONTIG_1	11	+	1199	11	full-splice_match	EIF3M	ENST00000531120	5051	11	28	3824	multi-exon	FALSE	canonical	0	0	1039	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2096_CONTIG_1	8	-	1669	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1062	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1791_CONTIG_1	10	+	1518	4	incomplete-splice_match	CYP2C9	ENST00000260682	1847	9	956	-627	internal_fragment	FALSE	canonical	0	0	347	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	71	526	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2148_CONTIG_1	11	+	515	4	full-splice_match	SAA1	ENST00000356524	615	4	90	10	multi-exon	FALSE	canonical	0	0	267	2	NA	0	0	FALSE	NA	NA	0	C	coding	122	366	38	403	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8077_CONTIG_1	14	+	1403	2	full-splice_match	RNASE4	ENST00000555835	1907	2	487	17	multi-exon	FALSE	canonical	0	0	172	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7211_CONTIG_1	11	-	1568	10	full-splice_match	HPX	ENST00000265983	1652	10	77	7	multi-exon	FALSE	canonical	0	0	107	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	25	1410	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7265_CONTIG_1	12	+	998	8	novel_not_in_catalog	ESYT1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	945	2	NA	0	0	FALSE	NA	NA	0	A	coding	288	864	86	949	15	0.24	0.76	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_560_CONTIG_1	16	+	1122	3	full-splice_match	HP	ENST00000566821	3024	3	1900	2	multi-exon	FALSE	canonical	0	0	181	2	NA	1	0	FALSE	NA	NA	0	C	coding	228	684	274	957	10	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8742_CONTIG_1	16	-	961	8	full-splice_match	PSMB10	ENST00000358514	1218	8	237	20	multi-exon	FALSE	canonical	0	0	157	2	NA	1	0	FALSE	NA	NA	0	A	coding	273	819	102	920	60	0.136	0.864	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7849_CONTIG_1	4	+	1629	8	full-splice_match	FGB	ENST00000302068	1975	8	55	291	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8322_CONTIG_1	10	+	1614	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	53	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2502_CONTIG_1	16	+	758	4	incomplete-splice_match	ACSM2A	ENST00000417235	1835	13	1312	-235	internal_fragment	FALSE	canonical	0	0	250	2	NA	0	0	FALSE	NA	NA	0	C	coding	95	285	68	352	65	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4709_CONTIG_1	X	+	280	2	genic_intron	novelGene_317	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	24	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.182	0.818	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2029_CONTIG_1	16	+	1582	9	full-splice_match	MLST8	ENST00000564088	1861	9	277	2	multi-exon	FALSE	canonical	0	0	946	2	NA	0	0	FALSE	NA	NA	0	A	coding	326	978	85	1062	20	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2356_CONTIG_1	16	+	1115	3	full-splice_match	HP	ENST00000566821	3024	3	1911	-2	multi-exon	FALSE	canonical	0	0	170	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	263	946	5	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1416_CONTIG_1	4	+	2051	15	full-splice_match	ALB	ENST00000295897	2263	15	51	161	multi-exon	FALSE	canonical	0	0	1891	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	39	1865	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1362_CONTIG_1	11	-	1705	4	full-splice_match	CD59	ENST00000395850	1889	4	16	168	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	61	444	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5453_CONTIG_1	1	+	1739	7	novel_not_in_catalog	SDCCAG8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	671	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	80	0.086	0.914	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6614_CONTIG_1	4	-	694	6	incomplete-splice_match	FGG	ENST00000336098	1659	9	-5	970	internal_fragment	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	216	648	45	692	30	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4938_CONTIG_1	4	-	1666	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	1	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	25	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_172_CONTIG_1	11	-	755	2	incomplete-splice_match	SLC37A4	ENST00000538950	2030	11	1255	20	5prime_fragment	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2746_CONTIG_1	17	-	991	7	full-splice_match	PHB	ENST00000300408	1832	7	21	820	multi-exon	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	C	coding	272	816	53	868	60	0.034	0.966	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3671_CONTIG_1	10	-	917	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	160	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	10	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3194_CONTIG_1	6	-	1769	7	novel_not_in_catalog	LPAL2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	98	2	NA	0	0	TRUE	NA	NA	0	A	coding	138	414	21	434	55	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7781_CONTIG_1	13	+	1283	9	full-splice_match	GTF3A	ENST00000381140	1383	9	79	21	multi-exon	FALSE	canonical	0	0	1048	2	NA	0	0	FALSE	NA	NA	0	C	coding	130	390	821	1210	45	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_872_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-12	451	multi-exon	FALSE	canonical	0	0	42	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	47	1009	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1607_CONTIG_1	4	+	2049	15	full-splice_match	ALB	ENST00000295897	2263	15	50	164	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2919_CONTIG_1	4	+	1818	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1689	2	NA	0	0	TRUE	NA	NA	0	C	coding	302	906	42	947	40	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1508_CONTIG_1	7	-	2038	13	full-splice_match	CYP3A4	ENST00000336411	2153	13	81	34	multi-exon	FALSE	canonical	0	0	174	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	50	0.078	0.922	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2423_CONTIG_1	9	-	1475	2	incomplete-splice_match	ALDOB	ENST00000374855	2451	9	939	37	5prime_fragment	FALSE	canonical	0	0	185	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1624_CONTIG_1	5	-	1512	6	full-splice_match	CMBL	ENST00000296658	2335	6	179	644	multi-exon	FALSE	canonical	0	0	223	2	NA	0	0	FALSE	NA	NA	0	C	coding	245	735	243	977	45	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7667_CONTIG_1	16	+	1120	3	full-splice_match	HP	ENST00000566821	3024	3	1900	4	multi-exon	FALSE	canonical	0	0	181	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	274	957	10	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6753_CONTIG_1	10	+	1640	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	27	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	55	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_113_CONTIG_1	20	+	1285	3	novel_in_catalog	LBP	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	274	2	NA	1	0	FALSE	NA	NA	0	C	coding	123	369	36	404	25	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2226_CONTIG_1	19	+	1163	4	full-splice_match	APOE	ENST00000252486	1208	4	42	3	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4048_CONTIG_1	6	+	1430	3	full-splice_match	BAG2	ENST00000370693	6651	3	310	4911	multi-exon	FALSE	canonical	0	0	285	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5146_CONTIG_1	5	-	693	4	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	121	2	NA	1	0	TRUE	NA	NA	0	C	coding	100	300	132	431	15	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2521_CONTIG_1	4	-	381	3	incomplete-splice_match	FGG	ENST00000405164	1539	10	828	330	internal_fragment	FALSE	canonical	0	0	81	2	NA	0	0	FALSE	NA	NA	0	C	coding	94	282	98	379	30	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5184_CONTIG_1	17	+	1546	9	novel_not_in_catalog	DPH1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	869	2	NA	0	0	TRUE	NA	NA	0	A	coding	304	912	1	912	15	0.99	0.01	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6159_CONTIG_1	16	+	749	5	full-splice_match	NME4	ENST00000219479	995	5	73	173	multi-exon	FALSE	canonical	0	0	381	2	NA	0	0	FALSE	NA	NA	0	A	coding	117	351	152	502	30	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1928_CONTIG_1	5	+	1906	3	full-splice_match	C5orf27	ENST00000357880	804	3	0	-1102	multi-exon	FALSE	canonical	0	0	587	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_506_CONTIG_1	11	-	883	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	317	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	30	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3249_CONTIG_1	19	+	1164	4	full-splice_match	APOE	ENST00000252486	1208	4	42	2	multi-exon	FALSE	canonical	0	0	305	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	70	1020	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3512_CONTIG_1	1	-	1180	7	incomplete-splice_match	ALDH9A1	ENST00000538148	1674	11	608	-114	5prime_fragment	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6503_CONTIG_1	9	+	1479	9	full-splice_match	DNAJA1	ENST00000330899	2381	9	60	842	multi-exon	FALSE	canonical	0	0	1098	2	NA	0	0	FALSE	NA	NA	0	C	coding	397	1191	124	1314	15	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2591_CONTIG_1	12	+	1381	7	full-splice_match	KRT18	ENST00000388835	1562	7	157	24	multi-exon	FALSE	canonical	0	0	1225	2	NA	0	0	FALSE	NA	NA	0	C	coding	430	1290	54	1343	45	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7879_CONTIG_1	1	-	475	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	3	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6945_CONTIG_1	10	-	1029	3	incomplete-splice_match	PSAP	ENST00000394934	2825	14	1519	277	5prime_fragment	FALSE	canonical	0	0	22	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	40	0.438	0.562	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3212_CONTIG_1	10	-	1529	6	full-splice_match	BNIP3	ENST00000368636	1160	6	-11	-358	multi-exon	FALSE	canonical	0	0	182	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5883_CONTIG_1	6	+	2024	6	incomplete-splice_match	HLA-E	ENST00000376630	2601	8	565	12	internal_fragment	FALSE	canonical	0	0	579	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6070_CONTIG_1	17	+	450	2	full-splice_match	UBB	ENST00000302182	1225	2	296	479	multi-exon	FALSE	canonical	0	0	90	2	NA	1	0	FALSE	NA	NA	0	C	coding	118	354	97	450	25	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6700_CONTIG_1	11	-	1514	6	novel_not_in_catalog	HSPA8	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	73	2	NA	0	0	TRUE	NA	NA	0	C	coding	398	1194	79	1272	25	0.966	0.034	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5249_CONTIG_1	4	-	1915	2	novel_in_catalog	RP11-290F5.1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	243	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8098_CONTIG_1	4	-	1522	9	full-splice_match	ADH1A	ENST00000209668	1499	9	-61	38	multi-exon	FALSE	canonical	0	0	193	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	176	1300	45	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1449_CONTIG_1	15	-	2037	8	full-splice_match	GATM	ENST00000558362	3911	8	1867	7	multi-exon	FALSE	canonical	0	0	77	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.194	0.806	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7877_CONTIG_1	2	+	536	6	full-splice_match	RPS27A	ENST00000272317	1071	6	286	249	multi-exon	FALSE	canonical	0	0	359	2	NA	0	0	FALSE	NA	NA	0	C	coding	156	468	39	506	20	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3198_CONTIG_1	6	+	755	7	novel_not_in_catalog	CFB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	573	2	NA	0	0	TRUE	NA	NA	0	C	coding	29	87	300	386	40	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4896_CONTIG_1	18	-	1528	10	full-splice_match	ACAA2	ENST00000285093	2018	10	437	53	multi-exon	FALSE	canonical	0	0	55	2	NA	1	0	FALSE	NA	NA	0	C	coding	397	1191	40	1230	45	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5290_CONTIG_1	9	+	827	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	657	2	NA	1	0	FALSE	NA	NA	0	B	coding	201	603	118	720	25	0.544	0.456	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4074_CONTIG_1	14	-	465	2	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	395	590	internal_fragment	FALSE	canonical	0	0	285	2	NA	0	0	FALSE	NA	NA	0	C	coding	32	96	369	464	10	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2622_CONTIG_1	6	+	1830	13	incomplete-splice_match	PLG	ENST00000308192	2741	19	777	134	internal_fragment	FALSE	canonical	0	0	1557	2	NA	0	0	FALSE	NA	NA	0	C	coding	407	1221	496	1716	30	0.176	0.824	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7104_CONTIG_1	9	-	1578	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	824	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	60	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6663_CONTIG_1	11	-	894	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	5	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8699_CONTIG_1	11	+	1503	12	full-splice_match	ACAT1	ENST00000265838	1761	12	51	207	multi-exon	FALSE	canonical	0	0	1203	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	0	0.1	0.9	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7793_CONTIG_1	16	+	1200	5	full-splice_match	HP	ENST00000398131	1252	5	17	35	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6695_CONTIG_1	17	-	1165	8	full-splice_match	APOH	ENST00000205948	1176	8	0	11	multi-exon	FALSE	canonical	0	0	102	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6073_CONTIG_1	19	-	1373	7	incomplete-splice_match	CYP2A6	ENST00000301141	1764	9	381	10	5prime_fragment	FALSE	canonical	0	0	133	2	NA	1	0	FALSE	NA	NA	0	C	coding	291	873	250	1122	15	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3077_CONTIG_1	4	+	1266	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	204	13	internal_fragment	FALSE	canonical	0	0	1114	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	225	1088	45	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3715_CONTIG_1	10	+	1816	4	full-splice_match	NRBF2	ENST00000277746	1850	4	20	14	multi-exon	FALSE	canonical	0	0	317	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5972_CONTIG_1	10	-	1993	10	full-splice_match	OAT	ENST00000368845	2048	10	13	42	multi-exon	FALSE	canonical	0	0	51	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.31	0.69	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7480_CONTIG_1	4	+	493	3	full-splice_match	FGB	ENST00000497097	574	3	3	78	multi-exon	FALSE	canonical	0	0	310	2	NA	0	0	FALSE	NA	NA	0	C	coding	163	489	5	493	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8003_CONTIG_1	1	-	892	9	full-splice_match	PSMA5	ENST00000271308	3729	9	-64	2901	multi-exon	FALSE	canonical	0	0	114	2	NA	0	0	FALSE	NA	NA	0	A	coding	241	723	86	808	30	0.254	0.746	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3600_CONTIG_1	4	+	1818	13	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	110	3prime_fragment	FALSE	canonical	0	0	1693	2	NA	0	0	FALSE	NA	NA	0	C	coding	592	1776	42	1817	25	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2178_CONTIG_1	6	+	1789	13	full-splice_match	TRMT11	ENST00000334379	1949	13	110	50	multi-exon	FALSE	canonical	0	0	1271	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7955_CONTIG_1	9	+	1482	15	full-splice_match	ASS1	ENST00000352480	1564	15	33	49	multi-exon	FALSE	canonical	0	0	1232	2	NA	0	0	FALSE	NA	NA	0	C	coding	412	1236	40	1275	50	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7217_CONTIG_1	6	-	1649	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	558	96	multi-exon	FALSE	canonical	0	0	31	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	62	1447	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6546_CONTIG_1	16	+	314	5	full-splice_match	HP	ENST00000398131	1252	5	17	921	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	95	285	28	312	30	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_269_CONTIG_1	3	+	1877	7	incomplete-splice_match	ARHGEF26	ENST00000465093	3929	15	2020	32	internal_fragment	FALSE	canonical	0	0	664	2	NA	0	0	FALSE	NA	NA	0	B	coding	245	735	70	804	85	0.664	0.336	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8693_CONTIG_1	14	-	1021	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	442	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	324	972	48	1019	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5247_CONTIG_1	19	+	400	4	full-splice_match	APOC1	ENST00000252491	461	4	44	17	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	40	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4116_CONTIG_1	3	-	2087	9	incomplete-splice_match	SUCLG2	ENST00000307227	2352	11	254	11	5prime_fragment	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	25	0.62	0.38	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7092_CONTIG_1	18	+	1340	4	full-splice_match	ELAC1	ENST00000269466	2235	4	34	861	multi-exon	FALSE	canonical	0	0	698	2	NA	0	0	FALSE	NA	NA	0	A	coding	363	1089	74	1162	50	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1705_CONTIG_1	1	+	1027	4	full-splice_match	H3F3A	ENST00000366815	1088	4	47	14	multi-exon	FALSE	canonical	0	0	392	2	NA	1	0	FALSE	NA	NA	0	C	coding	136	408	111	518	50	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6202_CONTIG_1	4	+	1994	15	full-splice_match	ALB	ENST00000295897	2263	15	48	221	multi-exon	FALSE	canonical	0	0	1894	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	25	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6065_CONTIG_1	14	-	1772	9	incomplete-splice_match	HSP90AA1	ENST00000216281	3379	11	147	1460	internal_fragment	FALSE	canonical	0	0	59	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	50	0.526	0.474	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_454_CONTIG_1	6	-	765	3	incomplete-splice_match	EEF1A1	ENST00000331523	1923	8	1157	1	5prime_fragment	FALSE	canonical	0	0	117	2	NA	0	0	FALSE	NA	NA	0	C	coding	128	384	91	474	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8277_CONTIG_1	4	+	2038	15	full-splice_match	ALB	ENST00000295897	2263	15	48	177	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4019_CONTIG_1	4	-	1573	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	94	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	50	0.068	0.932	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4122_CONTIG_1	4	+	1955	15	full-splice_match	ALB	ENST00000295897	2263	15	50	258	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	30	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3500_CONTIG_1	18	+	592	4	full-splice_match	TTR	ENST00000237014	957	4	151	214	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	50	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8389_CONTIG_1	11	-	1314	10	full-splice_match	EEF1G	ENST00000329251	1523	10	112	97	multi-exon	FALSE	canonical	0	0	31	2	NA	0	0	FALSE	NA	NA	0	C	coding	431	1293	20	1312	35	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4438_CONTIG_1	4	+	1992	15	full-splice_match	ALB	ENST00000295897	2263	15	48	223	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	30	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5243_CONTIG_1	1	+	1890	9	full-splice_match	ELF3	ENST00000367284	3179	9	108	1181	multi-exon	FALSE	canonical	0	0	1091	2	NA	0	0	FALSE	NA	NA	0	C	coding	371	1113	91	1203	10	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7915_CONTIG_1	10	-	930	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	147	multi-exon	FALSE	canonical	0	0	65	2	NA	1	0	FALSE	NA	NA	0	C	coding	201	603	84	686	15	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2828_CONTIG_1	1	-	2051	10	full-splice_match	HMGCS2	ENST00000369406	2428	10	-11	388	multi-exon	FALSE	canonical	0	0	165	2	NA	0	0	FALSE	NA	NA	0	C	coding	508	1524	62	1585	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1918_CONTIG_1	19	+	1151	4	full-splice_match	APOE	ENST00000252486	1208	4	48	9	multi-exon	FALSE	canonical	0	0	299	2	NA	0	0	FALSE	NA	NA	0	C	coding	317	951	64	1014	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7680_CONTIG_1	10	-	1918	9	full-splice_match	CYP2C8	ENST00000371270	1923	9	0	5	multi-exon	FALSE	canonical	0	0	263	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7079_CONTIG_1	4	+	2045	15	full-splice_match	ALB	ENST00000295897	2263	15	48	170	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	45	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6780_CONTIG_1	4	+	1382	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	165	-28	internal_fragment	FALSE	canonical	0	0	1221	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	332	1195	35	0.108	0.892	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4436_CONTIG_1	4	+	1099	8	novel_in_catalog	ALB	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	882	2	NA	0	0	FALSE	NA	NA	0	C	coding	353	1059	40	1098	50	0.092	0.908	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4585_CONTIG_1	1	-	285	3	incomplete-splice_match	ALDH9A1	ENST00000491436	819	4	217	317	internal_fragment	FALSE	canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5704_CONTIG_1	9	+	745	6	full-splice_match	ORM1	ENST00000259396	802	6	42	15	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3788_CONTIG_1	12	+	1863	13	full-splice_match	ALDH2	ENST00000261733	2018	13	40	115	multi-exon	FALSE	canonical	0	0	1542	2	NA	0	0	FALSE	NA	NA	0	C	coding	517	1551	22	1572	30	0.17	0.83	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6977_CONTIG_1	4	-	1545	10	full-splice_match	FGG	ENST00000404648	1760	10	196	19	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3812_CONTIG_1	X	+	785	6	incomplete-splice_match	OTC	ENST00000039007	1585	10	538	262	internal_fragment	FALSE	canonical	0	0	619	2	NA	0	0	FALSE	NA	NA	0	C	coding	221	663	14	676	20	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2673_CONTIG_1	4	+	2035	15	full-splice_match	ALB	ENST00000295897	2263	15	50	178	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3174_CONTIG_1	4	+	498	6	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	471	2	NA	0	0	TRUE	NA	NA	0	C	coding	150	450	49	498	40	0.968	0.032	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5128_CONTIG_1	6	+	527	6	full-splice_match	RPS18	ENST00000439602	613	6	67	19	multi-exon	FALSE	canonical	0	0	426	2	NA	0	0	FALSE	NA	NA	0	C	coding	152	456	44	499	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6706_CONTIG_1	4	+	2036	15	full-splice_match	ALB	ENST00000295897	2263	15	50	177	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	60	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5885_CONTIG_1	18	+	655	4	full-splice_match	TTR	ENST00000237014	957	4	109	193	multi-exon	FALSE	canonical	0	0	404	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	69	509	20	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8585_CONTIG_1	1	-	1156	2	genic	RGS16	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	1044	2	NA	3	1	TRUE	NA	NA	0	C	coding	143	429	195	623	20	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_330_CONTIG_1	1	-	1752	7	full-splice_match	CNN3	ENST00000370206	2165	7	150	263	multi-exon	FALSE	canonical	0	0	291	2	NA	2	0	FALSE	NA	NA	0	A	coding	329	987	235	1221	20	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7683_CONTIG_1	3	+	2009	16	incomplete-splice_match	TF	ENST00000402696	2968	17	682	277	internal_fragment	FALSE	canonical	0	0	1865	2	NA	0	0	FALSE	NA	NA	0	C	coding	571	1713	185	1897	15	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1702_CONTIG_1	19	+	1708	13	incomplete-splice_match	HPN	ENST00000392226	1783	14	72	3	internal_fragment	FALSE	canonical	0	0	1388	2	NA	0	0	FALSE	NA	NA	0	B	coding	417	1251	174	1424	20	0.73	0.27	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4627_CONTIG_1	5	+	399	3	full-splice_match	UQCRQ	ENST00000378670	839	3	91	349	multi-exon	FALSE	canonical	0	0	204	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	20	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4748_CONTIG_1	5	-	1618	3	full-splice_match	SEPP1	ENST00000514403	653	3	329	-1294	multi-exon	FALSE	canonical	0	0	74	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.152	0.848	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1904_CONTIG_1	17	-	1903	6	full-splice_match	ACTG1	ENST00000331925	1994	6	78	13	multi-exon	FALSE	canonical	0	0	63	2	NA	0	0	FALSE	NA	NA	0	C	coding	375	1125	70	1194	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6980_CONTIG_1	18	-	585	6	full-splice_match	RPL17	ENST00000579408	859	6	254	20	multi-exon	FALSE	canonical	0	0	55	2	NA	0	0	FALSE	NA	NA	0	C	coding	184	552	16	567	65	0.036	0.964	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4365_CONTIG_1	7	-	873	8	full-splice_match	PSMA2	ENST00000223321	1483	8	49	561	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.138	0.862	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2522_CONTIG_1	12	-	524	4	full-splice_match	NDUFA12	ENST00000327772	635	4	73	38	multi-exon	FALSE	canonical	0	0	103	2	NA	0	0	FALSE	NA	NA	0	A	coding	145	435	18	452	40	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6776_CONTIG_1	3	+	2484	10	full-splice_match	KNG1	ENST00000265023	3435	10	28	923	multi-exon	FALSE	canonical	0	0	1309	2	NA	0	0	FALSE	NA	NA	0	C	coding	644	1932	185	2116	20	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2033_CONTIG_1	9	-	1580	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	822	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7900_CONTIG_1	3	-	1130	5	novel_not_in_catalog	CP	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	342	2	NA	0	0	TRUE	NA	NA	0	B	non_coding	NA	NA	NA	NA	30	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_371_CONTIG_1	16	+	941	2	incomplete-splice_match	HP	ENST00000398131	1252	5	280	31	internal_fragment	FALSE	canonical	0	0	29	2	NA	0	0	FALSE	NA	NA	0	C	coding	228	684	122	805	45	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7378_CONTIG_1	5	-	1063	6	genic_intron	novelGene_511	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	709	2	NA	10	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.246	0.754	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8339_CONTIG_1	4	+	991	8	incomplete-splice_match	ALB	ENST00000509063	1911	14	-17	937	3prime_fragment	FALSE	canonical	0	0	884	2	NA	0	0	FALSE	NA	NA	0	C	coding	316	948	42	989	35	0.16	0.84	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5650_CONTIG_1	11	+	585	8	incomplete-splice_match	ARHGEF12	ENST00000529970	3786	36	166	3035	internal_fragment	FALSE	canonical	0	0	553	2	NA	0	0	FALSE	NA	NA	0	B	coding	102	306	278	583	50	0.676	0.324	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2685_CONTIG_1	3	+	2297	17	full-splice_match	TF	ENST00000402696	2968	17	439	232	multi-exon	FALSE	canonical	0	0	2108	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	47	2140	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1515_CONTIG_1	6	-	1622	10	incomplete-splice_match	MUT	ENST00000274813	3749	13	908	1219	5prime_fragment	FALSE	canonical	0	0	131	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1486_CONTIG_1	1	-	475	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	3	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6346_CONTIG_1	7	+	697	3	full-splice_match	BRI3	ENST00000297290	780	3	80	3	multi-exon	TRUE	canonical	0	0	286	2	NA	0	0	FALSE	NA	NA	0	A	coding	125	375	42	416	10	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1921_CONTIG_1	4	-	1665	13	full-splice_match	GC	ENST00000273951	1972	13	283	24	multi-exon	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	C	coding	474	1422	62	1483	50	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6599_CONTIG_1	7	-	1160	5	full-splice_match	KDELR2	ENST00000258739	2884	5	99	1625	multi-exon	FALSE	canonical	0	0	177	2	NA	0	0	FALSE	NA	NA	0	A	coding	212	636	87	722	25	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4941_CONTIG_1	4	-	1123	5	full-splice_match	SMIM14	ENST00000295958	6483	5	225	5135	multi-exon	FALSE	canonical	0	0	127	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	40	0.072	0.928	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1045_CONTIG_1	4	+	1971	15	full-splice_match	ALB	ENST00000295897	2263	15	50	242	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2121_CONTIG_1	19	+	1934	12	novel_in_catalog	PPP2R1A	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	1484	2	NA	1	0	FALSE	NA	NA	0	B	coding	410	1230	269	1498	10	0.806	0.194	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7432_CONTIG_1	16	+	569	2	incomplete-splice_match	HP	ENST00000567185	1251	6	369	313	internal_fragment	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	137	411	158	568	40	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7695_CONTIG_1	4	-	1508	10	full-splice_match	FGG	ENST00000404648	1760	10	196	56	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	45	1355	35	0.032	0.968	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5229_CONTIG_1	4	+	1863	14	incomplete-splice_match	ALB	ENST00000295897	2263	15	50	350	3prime_fragment	FALSE	canonical	0	0	1824	2	NA	0	0	FALSE	NA	NA	0	C	coding	608	1824	40	1863	50	0.11	0.89	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1053_CONTIG_1	3	+	1543	4	incomplete-splice_match	GLYCTK	ENST00000436784	1982	5	419	20	internal_fragment	TRUE	canonical	0	0	346	2	NA	1	0	FALSE	NA	NA	0	A	coding	396	1188	23	1210	30	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2404_CONTIG_1	4	+	1224	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	195	64	internal_fragment	FALSE	canonical	0	0	1123	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	234	1097	20	0.142	0.858	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7792_CONTIG_1	10	+	1646	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	4	17	multi-exon	FALSE	canonical	0	0	1326	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	30	1508	35	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6066_CONTIG_1	11	-	902	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	-3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5608_CONTIG_1	9	+	1299	2	novel_in_catalog	TRMT10B	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	51	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	95	0.25	0.75	POS	TRUE	Artifact
SAMPLE_1_MOLECULE_8525_CONTIG_1	5	-	1798	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	258	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.244	0.756	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1876_CONTIG_1	4	+	1677	6	full-splice_match	UGT2B10	ENST00000265403	1931	6	591	-337	multi-exon	TRUE	non_canonical	0	0	743	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7077_CONTIG_1	11	-	832	4	full-splice_match	APOA1	ENST00000236850	1227	4	326	69	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	41	832	25	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4483_CONTIG_1	14	-	1836	10	incomplete-splice_match	ZFYVE1	ENST00000553891	3244	13	1098	310	internal_fragment	FALSE	canonical	0	0	505	2	NA	0	0	FALSE	NA	NA	0	A	coding	358	1074	763	1836	20	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7582_CONTIG_1	18	+	613	4	full-splice_match	TTR	ENST00000237014	957	4	151	193	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6969_CONTIG_1	4	-	1264	5	incomplete-splice_match	ADH1B	ENST00000506651	1667	10	602	-199	5prime_fragment	FALSE	canonical	0	0	157	2	NA	1	0	FALSE	NA	NA	0	C	coding	166	498	218	715	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4694_CONTIG_1	4	+	1123	9	incomplete-splice_match	ALB	ENST00000415165	1483	11	254	106	internal_fragment	FALSE	canonical	0	0	1064	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	175	1038	20	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2840_CONTIG_1	4	+	1327	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1186	2	NA	0	0	TRUE	NA	NA	0	C	coding	373	1119	42	1160	65	0.982	0.018	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6046_CONTIG_1	19	+	871	4	full-splice_match	FTL	ENST00000331825	878	4	8	-1	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	0	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3205_CONTIG_1	4	-	2190	5	full-splice_match	FGA	ENST00000403106	2248	5	24	34	multi-exon	FALSE	canonical	0	0	109	2	NA	1	0	FALSE	NA	NA	0	C	coding	644	1932	56	1987	40	0.074	0.926	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7992_CONTIG_1	22	+	1707	10	incomplete-splice_match	TOM1	ENST00000447733	2317	15	589	21	internal_fragment	TRUE	canonical	0	0	790	2	NA	0	0	FALSE	NA	NA	0	A	coding	268	804	139	942	20	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7927_CONTIG_1	14	-	352	2	incomplete-splice_match	SERPINA1	ENST00000489769	1562	4	1195	15	5prime_fragment	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.052	0.948	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7740_CONTIG_1	14	-	396	3	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	576	478	internal_fragment	FALSE	canonical	0	0	104	2	NA	0	0	FALSE	NA	NA	0	C	coding	69	207	188	394	35	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8247_CONTIG_1	19	+	413	4	full-splice_match	APOC1	ENST00000252491	461	4	44	4	multi-exon	FALSE	canonical	0	0	240	2	NA	0	0	FALSE	NA	NA	0	C	coding	83	249	47	295	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7561_CONTIG_1	4	+	1971	15	full-splice_match	ALB	ENST00000295897	2263	15	50	242	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1548_CONTIG_1	10	-	1954	2	full-splice_match	C10orf10	ENST00000298295	2120	2	1	165	multi-exon	FALSE	canonical	0	0	192	2	NA	0	0	FALSE	NA	NA	0	C	coding	212	636	218	853	55	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3277_CONTIG_1	11	-	896	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	3	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1516_CONTIG_1	3	+	2307	17	full-splice_match	TF	ENST00000402696	2968	17	437	224	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4954_CONTIG_1	4	+	2000	15	full-splice_match	ALB	ENST00000295897	2263	15	48	215	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	15	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6951_CONTIG_1	10	+	1133	10	full-splice_match	ATP5C1	ENST00000356708	1163	10	15	15	multi-exon	TRUE	canonical	0	0	991	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7352_CONTIG_1	14	-	1098	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	365	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	350	1050	48	1097	30	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4480_CONTIG_1	17	+	497	4	incomplete-splice_match	CEP95	ENST00000553412	2586	19	1296	793	internal_fragment	FALSE	canonical	0	0	333	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8716_CONTIG_1	19	+	868	4	full-splice_match	FTL	ENST00000331825	878	4	8	2	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	5	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2332_CONTIG_1	8	-	1943	10	incomplete-splice_match	ASAH1	ENST00000381733	2511	14	521	47	5prime_fragment	FALSE	canonical	0	0	76	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.118	0.882	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_120_CONTIG_1	4	+	1482	8	full-splice_match	FGB	ENST00000302068	1975	8	55	438	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	coding	491	1473	9	1481	30	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5318_CONTIG_1	9	+	1647	7	full-splice_match	CDC37L1	ENST00000381854	3502	7	36	1819	multi-exon	FALSE	canonical	0	0	1078	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.212	0.788	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3949_CONTIG_1	4	+	1487	9	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1291	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	25	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_156_CONTIG_1	14	+	713	2	novel_not_in_catalog	ANG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	79	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	98	538	35	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7387_CONTIG_1	11	+	953	3	full-splice_match	NNMT	ENST00000299964	1610	3	593	64	multi-exon	FALSE	canonical	0	0	501	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	140	931	20	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3362_CONTIG_1	1	+	1349	2	full-splice_match	UBIAD1	ENST00000376810	3646	2	-2	2299	multi-exon	FALSE	canonical	0	0	857	2	NA	0	0	FALSE	NA	NA	0	A	coding	338	1014	329	1342	30	0.122	0.878	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_56_CONTIG_1	9	-	1766	6	full-splice_match	AQP3	ENST00000297991	1849	6	15	68	multi-exon	FALSE	canonical	0	0	174	2	NA	1	0	FALSE	NA	NA	0	C	coding	292	876	67	942	30	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3016_CONTIG_1	19	-	1389	3	full-splice_match	SLC39A3	ENST00000269740	1502	3	108	5	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	314	942	223	1164	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2641_CONTIG_1	10	-	1509	7	novel_not_in_catalog	PRDX3	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	73	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.422	0.578	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_835_CONTIG_1	16	+	1205	5	full-splice_match	HP	ENST00000398131	1252	5	17	30	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8530_CONTIG_1	12	+	1774	6	incomplete-splice_match	NR4A1	ENST00000394825	2518	7	703	41	internal_fragment	FALSE	canonical	0	0	1001	2	NA	0	0	FALSE	NA	NA	0	C	coding	373	1119	137	1255	45	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7389_CONTIG_1	5	-	2007	5	full-splice_match	SEPP1	ENST00000514985	2243	5	187	49	multi-exon	FALSE	canonical	0	0	57	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.356	0.644	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7754_CONTIG_1	11	-	891	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	8	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_538_CONTIG_1	15	+	903	4	full-splice_match	B2M	ENST00000558401	1715	4	36	776	multi-exon	FALSE	canonical	0	0	408	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1184_CONTIG_1	3	-	1818	5	full-splice_match	RHOA	ENST00000418115	2031	5	210	3	multi-exon	FALSE	canonical	0	0	173	2	NA	0	0	FALSE	NA	NA	0	C	coding	193	579	176	754	20	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6806_CONTIG_1	16	+	1230	5	full-splice_match	HP	ENST00000398131	1252	5	17	5	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3039_CONTIG_1	4	+	2040	15	full-splice_match	ALB	ENST00000295897	2263	15	48	175	multi-exon	FALSE	canonical	0	0	1894	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	60	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2215_CONTIG_1	14	-	1017	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	446	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3467_CONTIG_1	9	-	1206	10	full-splice_match	PTGR1	ENST00000407693	1407	10	194	7	multi-exon	FALSE	canonical	0	0	59	2	NA	0	0	FALSE	NA	NA	0	C	coding	329	987	70	1056	30	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4570_CONTIG_1	11	-	877	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	22	multi-exon	FALSE	canonical	0	0	18	2	NA	1	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7466_CONTIG_1	4	+	1650	8	full-splice_match	FGB	ENST00000302068	1975	8	55	270	multi-exon	FALSE	canonical	0	0	1252	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	5	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_657_CONTIG_1	7	-	690	4	incomplete-splice_match	CYP3A5	ENST00000469887	3149	12	2183	276	internal_fragment	FALSE	canonical	0	0	215	2	NA	1	0	FALSE	NA	NA	0	C	coding	172	516	173	688	35	0.03	0.97	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4611_CONTIG_1	9	+	759	6	fusion	ORM1_ORM2	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	B	coding	201	603	37	639	20	0.578	0.422	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_441_CONTIG_1	10	-	909	6	incomplete-splice_match	TUBGCP2	ENST00000368562	2685	10	1761	15	5prime_fragment	FALSE	canonical	0	0	114	2	NA	0	0	FALSE	NA	NA	0	A	coding	263	789	8	796	40	0.098	0.902	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2766_CONTIG_1	11	+	930	3	full-splice_match	NNMT	ENST00000299964	1610	3	627	53	multi-exon	FALSE	canonical	0	0	467	2	NA	0	0	FALSE	NA	NA	0	C	coding	264	792	106	897	15	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2203_CONTIG_1	16	+	391	3	full-splice_match	MT2A	ENST00000245185	786	3	385	10	multi-exon	FALSE	canonical	0	0	166	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2815_CONTIG_1	15	-	212	4	genic_intron	novelGene_379	novel	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	11	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.156	0.844	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7696_CONTIG_1	9	+	682	4	novel_not_in_catalog	CTSL	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	318	2	NA	0	0	TRUE	NA	NA	0	A	non_coding	NA	NA	NA	NA	55	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2190_CONTIG_1	6	+	1340	2	antisense	novelGene_TAF11_AS	novel	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	402	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.104	0.896	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4928_CONTIG_1	17	+	477	5	full-splice_match	RPL27	ENST00000253788	490	5	-4	17	multi-exon	FALSE	canonical	0	0	406	2	NA	1	0	FALSE	NA	NA	0	A	coding	136	408	45	452	65	0.112	0.888	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7939_CONTIG_1	5	-	1370	6	full-splice_match	CMBL	ENST00000296658	2335	6	290	675	multi-exon	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	245	735	132	866	70	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_363_CONTIG_1	14	+	1709	15	incomplete-splice_match	MTHFD1	ENST00000216605	3135	28	1392	34	internal_fragment	FALSE	canonical	0	0	1498	2	NA	1	0	FALSE	NA	NA	0	B	coding	366	1098	394	1491	45	0.772	0.228	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6209_CONTIG_1	12	-	902	7	full-splice_match	RPL6	ENST00000202773	947	7	36	9	multi-exon	FALSE	canonical	0	0	19	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	20	883	40	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2666_CONTIG_1	19	-	608	4	full-splice_match	WDR83OS	ENST00000596731	2562	4	1945	9	multi-exon	FALSE	canonical	0	0	58	2	NA	0	0	FALSE	NA	NA	0	A	coding	101	303	24	326	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1785_CONTIG_1	4	-	2017	9	full-splice_match	ADH4	ENST00000265512	1993	9	-10	-14	multi-exon	FALSE	canonical	0	0	103	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1187_CONTIG_1	11	-	1597	7	novel_not_in_catalog	INS-IGF2	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	119	2	NA	0	0	FALSE	NA	NA	0	B	coding	176	528	746	1273	25	0.69	0.31	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1429_CONTIG_1	11	-	846	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	53	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	0	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8352_CONTIG_1	2	-	1199	9	full-splice_match	SUCLG1	ENST00000393868	1475	9	232	44	multi-exon	FALSE	canonical	0	0	76	2	NA	0	0	FALSE	NA	NA	0	C	coding	333	999	19	1017	50	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8517_CONTIG_1	8	-	939	6	full-splice_match	HRSP12	ENST00000254878	1057	6	70	48	multi-exon	FALSE	canonical	0	0	140	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.042	0.958	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5514_CONTIG_1	11	+	1007	4	novel_not_in_catalog	PHRF1	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	839	2	NA	0	0	TRUE	NA	NA	0	A	coding	257	771	162	932	30	0.996	0.004	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5901_CONTIG_1	4	+	1092	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	374	17	internal_fragment	FALSE	canonical	0	0	944	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	55	918	55	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7862_CONTIG_1	12	-	1075	8	full-splice_match	RPLP0	ENST00000392514	1218	8	104	39	multi-exon	FALSE	canonical	0	0	25	2	NA	2	0	FALSE	NA	NA	0	C	coding	317	951	74	1024	35	0.24	0.76	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3579_CONTIG_1	4	+	1911	15	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1763	2	NA	0	0	TRUE	NA	NA	0	C	coding	566	1698	40	1737	55	0.974	0.026	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_1844_CONTIG_1	3	+	2302	17	full-splice_match	TF	ENST00000402696	2968	17	437	229	multi-exon	FALSE	canonical	0	0	2110	2	NA	0	0	FALSE	NA	NA	0	C	coding	698	2094	49	2142	40	0.038	0.962	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6813_CONTIG_1	1	+	2026	10	full-splice_match	LMNA	ENST00000361308	2069	10	41	2	multi-exon	FALSE	canonical	0	0	1816	2	NA	1	0	FALSE	NA	NA	0	C	coding	572	1716	209	1924	5	0.158	0.842	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4775_CONTIG_1	5	+	1515	13	novel_in_catalog	FCHO2	novel	NA	NA	NA	NA	no_combination_of_known_junctions	FALSE	canonical	0	0	1140	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.208	0.792	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8076_CONTIG_1	7	-	384	3	full-splice_match	AZGP1	ENST00000411734	2027	3	-14	1657	multi-exon	FALSE	canonical	0	0	87	2	NA	0	0	FALSE	NA	NA	0	C	coding	121	363	21	383	45	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_839_CONTIG_1	6	-	1744	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	3	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	15	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8405_CONTIG_1	8	-	1666	9	full-splice_match	CLU	ENST00000560366	2841	9	110	1065	multi-exon	FALSE	canonical	0	0	46	2	NA	0	0	FALSE	NA	NA	0	C	coding	448	1344	79	1422	10	0.022	0.978	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4206_CONTIG_1	1	+	923	2	full-splice_match	APCS	ENST00000255040	926	2	1	2	multi-exon	FALSE	canonical	0	0	160	2	NA	1	0	FALSE	NA	NA	0	C	coding	223	669	97	765	15	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4942_CONTIG_1	5	-	481	5	full-splice_match	RPS14	ENST00000401695	1599	5	10	1108	multi-exon	FALSE	canonical	0	0	35	2	NA	1	0	FALSE	NA	NA	0	C	coding	148	444	38	481	25	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_80_CONTIG_1	11	+	1215	4	full-splice_match	SDHD	ENST00000375549	1439	4	126	98	multi-exon	FALSE	canonical	0	0	323	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2793_CONTIG_1	16	+	1230	5	full-splice_match	HP	ENST00000398131	1252	5	17	5	multi-exon	FALSE	canonical	0	0	292	2	NA	1	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4646_CONTIG_1	5	-	1727	3	full-splice_match	SEPP1	ENST00000514403	653	3	240	-1314	multi-exon	FALSE	canonical	0	0	163	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	15	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3958_CONTIG_1	19	-	1236	5	incomplete-splice_match	SLC27A5	ENST00000263093	2361	10	73	1052	internal_fragment	FALSE	canonical	0	0	725	2	NA	0	0	FALSE	NA	NA	0	C	coding	399	1197	38	1234	30	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5985_CONTIG_1	5	-	581	3	full-splice_match	HINT1	ENST00000304043	1081	3	232	268	multi-exon	FALSE	canonical	0	0	159	2	NA	0	0	FALSE	NA	NA	0	C	coding	126	378	49	426	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8619_CONTIG_1	14	-	1530	5	full-splice_match	SLC10A1	ENST00000216540	2049	5	48	471	multi-exon	FALSE	canonical	0	0	442	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	87	1133	50	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2075_CONTIG_1	X	+	1807	3	full-splice_match	PGRMC1	ENST00000217971	1911	3	32	72	multi-exon	FALSE	canonical	0	0	563	2	NA	0	0	FALSE	NA	NA	0	A	coding	195	585	80	664	35	0.046	0.954	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_420_CONTIG_1	14	+	2184	10	full-splice_match	PCK2	ENST00000216780	2357	10	173	0	multi-exon	FALSE	canonical	0	0	1563	2	NA	0	0	FALSE	NA	NA	0	C	coding	640	1920	96	2015	10	0.12	0.88	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5771_CONTIG_1	1	-	474	4	full-splice_match	APOA2	ENST00000367990	474	4	-4	4	multi-exon	FALSE	canonical	0	0	38	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	63	362	15	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8258_CONTIG_1	12	-	899	8	full-splice_match	CD63	ENST00000257857	1070	8	186	-15	multi-exon	FALSE	canonical	0	0	82	2	NA	1	0	FALSE	NA	NA	0	C	coding	238	714	94	807	25	0.164	0.836	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2619_CONTIG_1	12	+	1388	15	full-splice_match	PCBP2	ENST00000546463	1457	15	12	57	multi-exon	FALSE	canonical	0	0	1167	2	NA	0	0	FALSE	NA	NA	0	C	coding	362	1086	116	1201	25	0.09	0.91	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7180_CONTIG_1	12	-	1493	9	full-splice_match	MLF2	ENST00000203630	1958	9	464	1	multi-exon	FALSE	canonical	0	0	153	2	NA	0	0	FALSE	NA	NA	0	C	coding	248	744	182	925	50	0.058	0.942	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2574_CONTIG_1	GL000220.1	-	228	4	antisense	novelGene_RNA18S5_AS	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	55	2	NA	3	3	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.244	0.756	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3066_CONTIG_1	9	+	578	2	full-splice_match	MRPL41	ENST00000371443	1262	2	680	4	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	A	coding	137	411	109	519	10	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8464_CONTIG_1	16	+	1214	5	full-splice_match	HP	ENST00000398131	1252	5	14	24	multi-exon	FALSE	canonical	0	0	295	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	31	1071	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6203_CONTIG_1	15	+	935	4	full-splice_match	B2M	ENST00000558401	1715	4	36	744	multi-exon	FALSE	canonical	0	0	408	2	NA	2	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.084	0.916	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1084_CONTIG_1	4	-	305	3	novel_not_in_catalog	CXCL2	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	175	2	NA	1	0	TRUE	NA	NA	0	C	coding	76	228	76	303	25	0.984	0.016	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_4669_CONTIG_1	18	+	612	4	full-splice_match	TTR	ENST00000237014	957	4	151	194	multi-exon	FALSE	canonical	0	0	362	2	NA	0	0	FALSE	NA	NA	0	C	coding	147	441	27	467	15	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3397_CONTIG_1	12	-	1738	2	full-splice_match	APOF	ENST00000398189	1715	2	-34	11	multi-exon	FALSE	canonical	0	0	128	2	NA	0	0	FALSE	NA	NA	0	C	coding	349	1047	44	1090	15	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4813_CONTIG_1	4	+	1108	8	incomplete-splice_match	ALB	ENST00000415165	1483	11	367	8	internal_fragment	FALSE	canonical	0	0	951	2	NA	1	0	FALSE	NA	NA	0	C	coding	288	864	62	925	40	0.144	0.856	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_949_CONTIG_1	17	+	583	2	incomplete-splice_match	SERPINF2	ENST00000450523	1462	9	807	72	internal_fragment	FALSE	canonical	0	0	134	2	NA	0	0	FALSE	NA	NA	0	B	coding	147	441	104	544	20	0.498	0.502	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6227_CONTIG_1	3	+	480	5	novel_not_in_catalog	TF	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	309	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	70	0.98	0.02	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6560_CONTIG_1	4	+	1465	8	full-splice_match	FGB	ENST00000302068	1975	8	57	453	multi-exon	FALSE	canonical	0	0	1250	2	NA	0	0	FALSE	NA	NA	0	C	coding	486	1458	7	1464	25	0.054	0.946	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4189_CONTIG_1	3	+	754	4	novel_not_in_catalog	AHSG	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	471	2	NA	0	0	TRUE	NA	NA	0	C	coding	137	411	81	491	20	0.962	0.038	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_259_CONTIG_1	1	-	800	2	genic_intron	novelGene_610	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	134	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	40	0.066	0.934	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2500_CONTIG_1	17	+	638	6	full-splice_match	RPL19	ENST00000225430	732	6	34	60	multi-exon	FALSE	canonical	0	0	495	2	NA	0	0	FALSE	NA	NA	0	C	coding	196	588	29	616	20	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3140_CONTIG_1	6	-	1733	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	14	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	40	0.016	0.984	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5409_CONTIG_1	4	-	1872	9	novel_not_in_catalog	ADH1B	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	80	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.956	0.044	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8509_CONTIG_1	4	-	1906	5	incomplete-splice_match	HSD17B13	ENST00000302219	2269	6	291	72	5prime_fragment	FALSE	canonical	0	0	96	2	NA	1	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.06	0.94	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3786_CONTIG_1	4	+	1259	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1148	2	NA	1	0	TRUE	NA	NA	0	C	coding	361	1083	40	1122	5	0.998	0.002	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7302_CONTIG_1	7	-	803	4	full-splice_match	CHCHD2	ENST00000395422	901	4	77	21	multi-exon	FALSE	canonical	0	0	136	2	NA	0	0	FALSE	NA	NA	0	C	coding	151	453	87	539	25	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8330_CONTIG_1	9	+	728	6	full-splice_match	ORM1	ENST00000259396	802	6	42	32	multi-exon	FALSE	canonical	0	0	576	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	37	639	30	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2266_CONTIG_1	6	-	1723	8	full-splice_match	EEF1A1	ENST00000309268	2303	8	556	24	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	462	1386	64	1449	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1206_CONTIG_1	15	-	2313	9	full-splice_match	GATM	ENST00000396659	2597	9	249	35	multi-exon	FALSE	canonical	0	0	160	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.094	0.906	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4493_CONTIG_1	4	+	1953	15	full-splice_match	ALB	ENST00000295897	2263	15	50	260	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3856_CONTIG_1	4	+	2055	15	full-splice_match	ALB	ENST00000295897	2263	15	48	160	multi-exon	FALSE	canonical	0	0	1894	2	NA	2	0	FALSE	NA	NA	0	C	coding	609	1827	42	1868	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6982_CONTIG_1	4	-	1467	9	full-splice_match	ADH4	ENST00000265512	1993	9	0	526	multi-exon	FALSE	canonical	0	0	93	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.128	0.872	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8018_CONTIG_1	12	+	1381	4	full-splice_match	PEBP1	ENST00000261313	1697	4	297	19	multi-exon	FALSE	canonical	0	0	401	2	NA	1	0	FALSE	NA	NA	0	C	coding	187	561	56	616	55	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6656_CONTIG_1	4	+	1441	11	novel_not_in_catalog	ALB	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1352	2	NA	0	0	TRUE	NA	NA	0	C	coding	35	105	462	566	50	0.978	0.022	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_6644_CONTIG_1	3	+	1766	4	novel_in_catalog	EIF4A2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	192	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	30	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6795_CONTIG_1	9	-	2066	13	full-splice_match	ALDH1A1	ENST00000297785	2107	13	1	40	multi-exon	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	60	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5485_CONTIG_1	17	+	1546	5	incomplete-splice_match	PIPOX	ENST00000323372	2410	8	836	28	internal_fragment	FALSE	canonical	0	0	532	2	NA	1	0	FALSE	NA	NA	0	B	coding	174	522	139	660	50	0.51	0.49	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6973_CONTIG_1	15	-	1566	6	incomplete-splice_match	NARG2	ENST00000439632	7049	16	1276	4207	internal_fragment	FALSE	canonical	0	0	918	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	25	0.076	0.924	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5795_CONTIG_1	14	+	1576	5	full-splice_match	SERPINA3	ENST00000393078	1589	5	13	0	multi-exon	FALSE	canonical	0	0	1134	2	NA	0	0	FALSE	NA	NA	0	C	coding	423	1269	67	1335	10	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7489_CONTIG_1	5	-	837	6	full-splice_match	SKP1	ENST00000353411	9467	6	88	8542	multi-exon	FALSE	canonical	0	0	96	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	20	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7156_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-7	446	multi-exon	FALSE	canonical	0	0	37	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	42	1010	20	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_252_CONTIG_1	9	-	2067	17	full-splice_match	HNRNPK	ENST00000376281	2928	17	-21	882	multi-exon	FALSE	canonical	0	0	123	2	NA	0	0	FALSE	NA	NA	0	C	coding	464	1392	231	1622	35	0.048	0.952	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2129_CONTIG_1	4	+	2048	15	full-splice_match	ALB	ENST00000295897	2263	15	50	165	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	40	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2292_CONTIG_1	6	-	950	2	genic_intron	novelGene_761	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	862	2	NA	3	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.344	0.656	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7853_CONTIG_1	19	+	860	4	full-splice_match	FTL	ENST00000331825	878	4	8	10	multi-exon	FALSE	canonical	0	0	574	2	NA	0	0	FALSE	NA	NA	0	C	coding	175	525	200	724	10	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4149_CONTIG_1	4	-	1622	9	full-splice_match	FGG	ENST00000336098	1659	9	-8	45	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	453	1359	48	1406	35	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6425_CONTIG_1	16	-	1928	14	novel_in_catalog	CES1	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	112	2	NA	0	0	FALSE	NA	NA	0	C	coding	567	1701	61	1761	35	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7183_CONTIG_1	4	+	1783	8	full-splice_match	FGB	ENST00000302068	1975	8	56	136	multi-exon	FALSE	canonical	0	0	1251	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8023_CONTIG_1	2	-	1228	10	full-splice_match	HAAO	ENST00000294973	1265	10	14	23	multi-exon	FALSE	canonical	0	0	122	2	NA	0	0	FALSE	NA	NA	0	C	coding	286	858	43	900	35	0.026	0.974	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5325_CONTIG_1	4	+	2052	15	full-splice_match	ALB	ENST00000295897	2263	15	50	161	multi-exon	FALSE	canonical	0	0	1892	2	NA	0	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	35	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7479_CONTIG_1	11	-	878	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	21	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	35	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3127_CONTIG_1	2	-	1091	4	full-splice_match	ADI1	ENST00000327435	2391	4	205	1095	multi-exon	FALSE	canonical	0	0	164	2	NA	1	0	FALSE	NA	NA	0	C	coding	179	537	45	581	20	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1952_CONTIG_1	11	+	365	2	genic_intron	novelGene_586	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	327	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	50	0.096	0.904	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5291_CONTIG_1	14	-	1016	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	447	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	323	969	48	1016	25	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5076_CONTIG_1	10	+	1711	4	full-splice_match	PGAM1	ENST00000334828	1830	4	119	0	multi-exon	FALSE	canonical	0	0	624	2	NA	0	0	FALSE	NA	NA	0	C	coding	254	762	30	791	15	0.102	0.898	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3979_CONTIG_1	17	+	915	2	full-splice_match	UBB	ENST00000302182	1225	2	296	14	multi-exon	FALSE	canonical	0	0	90	2	NA	0	0	FALSE	NA	NA	0	C	coding	229	687	97	783	20	0.006	0.994	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8333_CONTIG_1	4	+	1380	10	incomplete-splice_match	ALB	ENST00000511370	1519	11	161	-22	internal_fragment	FALSE	canonical	0	0	1225	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	336	1199	45	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3510_CONTIG_1	22	+	1318	9	full-splice_match	DRG1	ENST00000331457	1746	9	79	349	multi-exon	FALSE	canonical	0	0	1086	2	NA	0	0	FALSE	NA	NA	0	C	coding	367	1101	83	1183	20	0.062	0.938	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2615_CONTIG_1	9	-	1580	9	full-splice_match	ALDOB	ENST00000374855	2451	9	49	822	multi-exon	FALSE	canonical	0	0	66	2	NA	0	0	FALSE	NA	NA	0	C	coding	364	1092	77	1168	55	0.018	0.982	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3829_CONTIG_1	4	-	1915	13	full-splice_match	ETNPPL	ENST00000296486	2099	13	2	182	multi-exon	FALSE	canonical	0	0	209	2	NA	1	0	FALSE	NA	NA	0	C	coding	499	1497	154	1650	50	0.064	0.936	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2750_CONTIG_1	4	-	1565	6	full-splice_match	UGT2B4	ENST00000305107	2103	6	511	27	multi-exon	FALSE	canonical	0	0	257	2	NA	0	0	FALSE	NA	NA	0	C	non_coding	NA	NA	NA	NA	55	0.106	0.894	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7707_CONTIG_1	4	+	1944	15	full-splice_match	ALB	ENST00000295897	2263	15	50	269	multi-exon	FALSE	canonical	0	0	1892	2	NA	1	0	FALSE	NA	NA	0	C	coding	609	1827	40	1866	0	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6710_CONTIG_1	12	+	1060	4	full-splice_match	PEBP1	ENST00000261313	1697	4	238	399	multi-exon	FALSE	canonical	0	0	460	2	NA	0	0	FALSE	NA	NA	0	C	coding	187	561	115	675	25	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4854_CONTIG_1	9	+	1674	4	full-splice_match	SLC31A2	ENST00000259392	1785	4	70	41	multi-exon	FALSE	canonical	0	0	326	2	NA	1	0	FALSE	NA	NA	0	C	coding	143	429	64	492	60	0.024	0.976	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4857_CONTIG_1	16	+	1229	5	full-splice_match	HP	ENST00000398131	1252	5	17	6	multi-exon	FALSE	canonical	0	0	292	2	NA	0	0	FALSE	NA	NA	0	C	coding	347	1041	28	1068	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3036_CONTIG_1	14	-	1011	4	full-splice_match	SERPINA1	ENST00000402629	1450	4	-13	452	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	321	963	48	1010	20	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4636_CONTIG_1	7	-	662	4	incomplete-splice_match	ACTB	ENST00000331789	1917	6	108	1147	internal_fragment	FALSE	canonical	0	0	78	2	NA	0	0	FALSE	NA	NA	0	C	coding	192	576	85	660	20	0.028	0.972	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2801_CONTIG_1	9	+	997	8	full-splice_match	FCN2	ENST00000291744	1057	8	-1	61	multi-exon	FALSE	canonical	0	0	705	2	NA	0	0	FALSE	NA	NA	0	A	coding	313	939	12	950	10	0.29	0.71	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6534_CONTIG_1	11	-	960	6	novel_in_catalog	CTSF	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	82	2	NA	0	0	FALSE	NA	NA	0	B	coding	156	468	22	489	30	0.624	0.376	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5337_CONTIG_1	14	+	1571	5	full-splice_match	SERPINA3	ENST00000393080	1581	5	7	3	multi-exon	FALSE	canonical	0	0	1129	2	NA	0	0	FALSE	NA	NA	0	C	coding	420	1260	71	1330	10	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6886_CONTIG_1	11	+	2165	11	full-splice_match	HSD17B12	ENST00000278353	2420	11	29	226	multi-exon	FALSE	canonical	0	0	924	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.166	0.834	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5591_CONTIG_1	1	-	1265	7	full-splice_match	BCAS2	ENST00000369541	1299	7	18	16	multi-exon	FALSE	canonical	0	0	123	2	NA	1	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.186	0.814	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5815_CONTIG_1	10	+	1624	9	full-splice_match	CYP2E1	ENST00000252945	1667	9	0	43	multi-exon	FALSE	canonical	0	0	1330	2	NA	0	0	FALSE	NA	NA	0	C	coding	493	1479	34	1512	45	0.004	0.996	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7417_CONTIG_1	19	-	1774	12	full-splice_match	TMEM161A	ENST00000162044	1820	12	35	11	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	A	coding	479	1437	31	1467	30	0.2	0.8	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1061_CONTIG_1	5	-	695	5	novel_not_in_catalog	SEPP1	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	57	2	NA	0	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	45	0.986	0.014	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5159_CONTIG_1	15	-	819	3	genic_intron	novelGene_421	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	404	2	NA	1	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	75	0.412	0.588	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6748_CONTIG_1	11	-	794	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	105	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	252	756	39	794	15	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8736_CONTIG_1	3	-	2270	12	incomplete-splice_match	UROC1	ENST00000290868	3149	20	903	-24	5prime_fragment	FALSE	canonical	0	0	53	2	NA	0	0	FALSE	NA	NA	0	A	coding	390	1170	10	1179	10	0.218	0.782	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_954_CONTIG_1	12	-	1253	3	novel_in_catalog	SLC41A2	novel	NA	NA	NA	NA	combination_of_known_junctions	FALSE	canonical	0	0	195	2	NA	0	0	FALSE	NA	NA	0	B	coding	195	585	495	1079	25	0.514	0.486	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_8291_CONTIG_1	X	+	2228	2	full-splice_match	HNRNPH2	ENST00000316594	2223	2	-69	64	multi-exon	FALSE	canonical	0	0	94	2	NA	2	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.08	0.92	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3771_CONTIG_1	8	-	1948	4	full-splice_match	TPD52	ENST00000524194	334	4	-2	-1612	multi-exon	FALSE	canonical	0	0	151	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	30	0.056	0.944	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1097_CONTIG_1	4	+	1513	8	full-splice_match	FGB	ENST00000302068	1975	8	59	403	multi-exon	FALSE	canonical	0	0	1248	2	NA	1	0	FALSE	NA	NA	0	C	coding	491	1473	5	1477	30	0.082	0.918	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1983_CONTIG_1	10	-	901	6	full-splice_match	RBP4	ENST00000371464	1068	6	-9	176	multi-exon	FALSE	canonical	0	0	65	2	NA	0	0	FALSE	NA	NA	0	C	coding	201	603	84	686	30	0.01	0.99	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4668_CONTIG_1	1	-	786	4	incomplete-splice_match	SERPINC1	ENST00000367698	1594	7	761	47	5prime_fragment	FALSE	canonical	0	0	120	2	NA	0	0	FALSE	NA	NA	0	C	coding	182	546	205	750	35	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7099_CONTIG_1	4	-	1187	7	full-splice_match	QDPR	ENST00000281243	1648	7	144	317	multi-exon	FALSE	canonical	0	0	141	2	NA	0	0	FALSE	NA	NA	0	A	coding	244	732	37	768	30	0.174	0.826	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6431_CONTIG_1	11	-	899	4	full-splice_match	APOA1	ENST00000236850	1227	4	328	0	multi-exon	FALSE	canonical	0	0	18	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	39	839	10	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1651_CONTIG_1	19	-	771	9	incomplete-splice_match	C3	ENST00000245907	5263	41	4240	252	5prime_fragment	FALSE	canonical	0	0	25	2	NA	0	0	FALSE	NA	NA	0	B	coding	256	768	3	770	55	0.64	0.36	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5463_CONTIG_1	4	+	521	5	novel_not_in_catalog	FGB	novel	NA	NA	NA	NA	any annotated donor/acceptor	TRUE	non_canonical	0	0	496	2	NA	0	0	TRUE	NA	NA	0	C	coding	171	513	7	519	30	0.958	0.042	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_2845_CONTIG_1	1	-	2100	11	full-splice_match	CERS2	ENST00000368954	2504	11	281	123	multi-exon	FALSE	canonical	0	0	104	2	NA	0	0	FALSE	NA	NA	0	C	coding	380	1140	106	1245	70	0.014	0.986	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_6746_CONTIG_1	4	-	1531	10	full-splice_match	FGG	ENST00000404648	1760	10	193	36	multi-exon	FALSE	canonical	0	0	125	2	NA	0	0	FALSE	NA	NA	0	C	coding	437	1311	48	1358	30	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7501_CONTIG_1	10	+	434	4	genic_intron	novelGene_562	novel	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	329	2	NA	6	2	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	100	0.162	0.838	POS	TRUE	Artifact
SAMPLE_1_MOLECULE_2399_CONTIG_1	11	-	876	4	full-splice_match	APOA1	ENST00000236850	1227	4	326	25	multi-exon	FALSE	canonical	0	0	20	2	NA	0	0	FALSE	NA	NA	0	C	coding	267	801	41	841	45	0.002	0.998	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_837_CONTIG_1	4	-	1875	10	novel_not_in_catalog	ADH4	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	118	2	NA	1	0	TRUE	NA	NA	0	C	non_coding	NA	NA	NA	NA	35	0.97	0.03	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_5769_CONTIG_1	16	+	2060	13	full-splice_match	ACSM2A	ENST00000396104	2734	13	34	640	multi-exon	FALSE	canonical	0	0	1606	2	NA	0	0	FALSE	NA	NA	0	C	coding	560	1680	29	1708	70	0.132	0.868	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7066_CONTIG_1	1	+	1161	6	full-splice_match	HMGN2	ENST00000361427	1191	6	-13	43	multi-exon	FALSE	canonical	0	0	344	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	45	0.05	0.95	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3294_CONTIG_1	17	+	1282	5	novel_not_in_catalog	PIPOX	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	non_canonical	0	0	1216	2	NA	0	0	TRUE	NA	NA	0	B	coding	250	750	67	816	35	1	0	NEG	FALSE	Artifact
SAMPLE_1_MOLECULE_7923_CONTIG_1	1	-	449	4	full-splice_match	APOA2	ENST00000367990	474	4	1	24	multi-exon	FALSE	canonical	0	0	33	2	NA	0	0	FALSE	NA	NA	0	C	coding	100	300	58	357	50	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_638_CONTIG_1	6	-	831	6	full-splice_match	SOD2	ENST00000367055	990	6	-10	169	multi-exon	FALSE	canonical	0	0	100	2	NA	0	0	FALSE	NA	NA	0	C	coding	222	666	78	743	40	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_943_CONTIG_1	1	+	1139	5	incomplete-splice_match	COG2	ENST00000546013	1400	10	700	-439	internal_fragment	FALSE	canonical	0	0	537	2	NA	0	0	FALSE	NA	NA	0	A	coding	199	597	40	636	10	0.088	0.912	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2976_CONTIG_1	1	+	272	2	genic_intron	novelGene_89	novel	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	74	2	NA	1	1	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	10	0.252	0.748	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3435_CONTIG_1	17	-	1382	8	novel_not_in_catalog	VTN	novel	NA	NA	NA	NA	any annotated donor/acceptor	FALSE	canonical	0	0	168	2	NA	0	0	FALSE	NA	NA	0	C	coding	424	1272	105	1376	30	0.012	0.988	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_8717_CONTIG_1	11	-	888	4	full-splice_match	FTH1	ENST00000273550	1229	4	29	312	multi-exon	FALSE	canonical	0	0	320	2	NA	0	0	FALSE	NA	NA	0	C	coding	183	549	207	755	45	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5199_CONTIG_1	19	+	999	5	incomplete-splice_match	LSR	ENST00000605618	1606	7	587	20	internal_fragment	FALSE	canonical	0	0	880	2	NA	1	0	FALSE	NA	NA	0	A	coding	248	744	170	913	50	0.19	0.81	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_3424_CONTIG_1	12	+	1695	12	incomplete-splice_match	HSP90B1	ENST00000299767	2858	18	74	1089	3prime_fragment	FALSE	canonical	0	0	1482	2	NA	0	0	FALSE	NA	NA	0	B	non_coding	NA	NA	NA	NA	65	0.738	0.262	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_7255_CONTIG_1	14	-	1375	5	full-splice_match	SERPINA1	ENST00000393087	1622	5	218	29	multi-exon	FALSE	canonical	0	0	43	2	NA	0	0	FALSE	NA	NA	0	C	coding	418	1254	48	1301	5	0.008	0.992	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_2097_CONTIG_1	18	-	719	5	full-splice_match	CYB5A	ENST00000340533	834	5	112	3	multi-exon	FALSE	canonical	0	0	158	2	NA	0	0	FALSE	NA	NA	0	C	coding	134	402	30	431	10	0.02	0.98	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_1661_CONTIG_1	4	+	370	4	full-splice_match	ALB	ENST00000515133	665	4	2	293	multi-exon	FALSE	canonical	0	0	309	2	NA	0	0	FALSE	NA	NA	0	C	coding	110	330	40	369	25	0	1	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5770_CONTIG_1	19	-	1714	9	full-splice_match	CYP2A6	ENST00000301141	1764	9	0	50	multi-exon	FALSE	canonical	0	0	201	2	NA	1	0	FALSE	NA	NA	0	C	coding	494	1482	22	1503	40	0.14	0.86	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_4406_CONTIG_1	4	+	1372	11	full-splice_match	ALB	ENST00000511370	1519	11	44	103	multi-exon	FALSE	canonical	0	0	1342	2	NA	0	0	FALSE	NA	NA	0	C	coding	288	864	453	1316	40	0.04	0.96	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_535_CONTIG_1	10	+	1888	6	incomplete-splice_match	TSPAN14	ENST00000372157	855	9	226	-1259	internal_fragment	FALSE	canonical	0	0	611	2	NA	0	0	FALSE	NA	NA	0	A	coding	215	645	36	680	20	0.07	0.93	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5392_CONTIG_1	7	-	888	6	incomplete-splice_match	TRA2A	ENST00000297071	1845	8	34	923	internal_fragment	FALSE	canonical	0	0	219	2	NA	0	0	FALSE	NA	NA	0	A	non_coding	NA	NA	NA	NA	35	0.044	0.956	POS	FALSE	Isoform
SAMPLE_1_MOLECULE_5460_CONTIG_1	13	+	281	1	genic_intron	novelGene_663	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4120_CONTIG_1	22	+	1140	1	novel_in_catalog	SERPIND1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_23_CONTIG_1	2	+	408	1	incomplete-splice_match	EHD3	ENST00000322054	4636	6	4208	21	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6396_CONTIG_1	22	+	1035	1	genic_intron	novelGene_253	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8665_CONTIG_1	22	+	527	1	genic_intron	novelGene_241	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3740_CONTIG_1	15	+	988	1	antisense	novelGene_C15orf38-AP3S2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3595_CONTIG_1	12	-	852	1	incomplete-splice_match	PAWR	ENST00000328827	9129	7	8233	45	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8074_CONTIG_1	14	-	880	1	intergenic	novelGene_621	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1104_CONTIG_1	MT	+	1057	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	502	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4517_CONTIG_1	14	-	491	1	incomplete-splice_match	RPS6KA5	ENST00000261991	4202	17	3078	634	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6514_CONTIG_1	4	+	1417	1	genic_intron	novelGene_543	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5588_CONTIG_1	4	+	1916	1	genic_intron	novelGene_852	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8015_CONTIG_1	11	-	2068	1	genic_intron	novelGene_712	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1586_CONTIG_1	19	+	477	1	incomplete-splice_match	GADD45B	ENST00000215631	1373	4	836	61	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5099_CONTIG_1	16	+	644	1	incomplete-splice_match	HP	ENST00000398131	1252	5	608	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	46	477	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3040_CONTIG_1	MT	+	289	1	full-splice_match	MT-ND1	ENST00000361390	956	1	672	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6139_CONTIG_1	10	+	2110	1	genic_intron	novelGene_157	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1118_CONTIG_1	1	-	549	1	antisense	novelGene_CFH_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4833_CONTIG_1	16	-	1394	1	genic_intron	novelGene_349	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1700_CONTIG_1	7	+	592	1	antisense	novelGene_BRAF_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8059_CONTIG_1	16	+	994	1	full-splice_match	THAP11	ENST00000303596	1885	1	747	144	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	90	270	171	440	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4262_CONTIG_1	12	+	1560	1	genic_intron	novelGene_66	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4330_CONTIG_1	8	+	1300	1	intergenic	novelGene_757	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3377_CONTIG_1	12	-	912	1	genic_intron	novelGene_124	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4917_CONTIG_1	12	+	284	1	genic_intron	novelGene_313	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8158_CONTIG_1	12	-	379	1	genic_intron	novelGene_72	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5628_CONTIG_1	GL000220.1	+	629	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	136	1104	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2340_CONTIG_1	14	-	305	1	genic_intron	novelGene_607	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3744_CONTIG_1	12	+	1163	1	genic_intron	novelGene_414	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5874_CONTIG_1	9	-	1662	1	incomplete-splice_match	RFK	ENST00000490113	2386	5	707	18	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5095_CONTIG_1	13	+	510	1	full-splice_match	FGF14-AS2	ENST00000606448	1074	1	-14	578	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5084_CONTIG_1	MT	+	1495	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	64	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6654_CONTIG_1	2	-	667	1	incomplete-splice_match	SFXN5	ENST00000479293	1808	5	1049	93	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_716_CONTIG_1	3	+	782	1	incomplete-splice_match	USP13	ENST00000263966	8323	21	7541	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1322_CONTIG_1	4	-	1593	1	genic_intron	novelGene_597	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7739_CONTIG_1	7	+	2049	1	genic_intron	novelGene_796	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2473_CONTIG_1	X	-	855	1	genic_intron	novelGene_206	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1925_CONTIG_1	7	-	1223	1	incomplete-splice_match	PDK4	ENST00000005178	3576	11	1511	843	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2160_CONTIG_1	MT	+	1552	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5394_CONTIG_1	1	-	1215	1	incomplete-splice_match	ALDH4A1	ENST00000538839	2957	14	1629	114	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8126_CONTIG_1	10	-	742	1	genic_intron	novelGene_200	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2618_CONTIG_1	15	+	338	1	incomplete-splice_match	SORD	ENST00000267814	4909	9	2176	2396	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5175_CONTIG_1	11	-	1104	1	antisense	novelGene_POLD3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_547_CONTIG_1	12	-	489	1	incomplete-splice_match	SLC38A2	ENST00000551374	2802	9	2040	274	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6937_CONTIG_1	11	-	1030	1	genic_intron	novelGene_713	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3643_CONTIG_1	3	+	450	1	genic_intron	novelGene_870	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6523_CONTIG_1	3	+	1173	1	incomplete-splice_match	IL1RAP	ENST00000342550	4490	10	3145	173	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1857_CONTIG_1	2	+	1051	1	novel_in_catalog	MAP4K4	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2665_CONTIG_1	3	+	1896	1	genic_intron	novelGene_298	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7663_CONTIG_1	16	+	914	1	incomplete-splice_match	RBL2	ENST00000379935	4467	21	3496	58	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8518_CONTIG_1	8	+	2523	1	genic_intron	novelGene_153	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4494_CONTIG_1	1	+	261	1	genic_intron	novelGene_614	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4473_CONTIG_1	12	+	1415	1	genic_intron	novelGene_684	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3568_CONTIG_1	3	-	2003	1	genic_intron	novelGene_467	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6630_CONTIG_1	3	+	1672	1	incomplete-splice_match	LPP	ENST00000543006	18221	11	12090	4460	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4521_CONTIG_1	5	+	1163	1	incomplete-splice_match	CNOT8	ENST00000285896	2528	7	1280	86	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7342_CONTIG_1	X	+	1619	1	incomplete-splice_match	MSN	ENST00000360270	3942	13	2271	53	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	99	297	745	1041	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7959_CONTIG_1	14	-	340	1	genic_intron	novelGene_554	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5968_CONTIG_1	10	-	523	1	genic_intron	novelGene_226	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4123_CONTIG_1	2	-	616	1	incomplete-splice_match	RAPH1	ENST00000319170	9808	14	8913	280	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1540_CONTIG_1	4	-	977	1	intergenic	novelGene_52	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5061_CONTIG_1	3	-	2292	1	genic_intron	novelGene_432	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1079_CONTIG_1	13	-	1571	1	genic_intron	novelGene_335	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3524_CONTIG_1	9	-	778	1	incomplete-splice_match	ZFAND5	ENST00000376960	2686	6	1895	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2573_CONTIG_1	20	+	557	1	genic_intron	novelGene_14	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1247_CONTIG_1	11	+	2190	1	antisense	novelGene_HPX_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4192_CONTIG_1	5	-	1358	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	856	30	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5191_CONTIG_1	1	+	1974	1	incomplete-splice_match	CMPK1	ENST00000371873	2930	6	887	70	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3368_CONTIG_1	16	+	891	1	full-splice_match	MT2A	ENST00000562017	903	1	-11	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2377_CONTIG_1	19	+	784	1	intergenic	novelGene_412	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3057_CONTIG_1	11	+	681	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3904	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4506_CONTIG_1	9	-	2054	1	antisense	novelGene_RCL1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1500_CONTIG_1	7	-	1955	1	genic_intron	novelGene_389	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8440_CONTIG_1	5	+	1521	1	incomplete-splice_match	SLC35A4	ENST00000323146	3041	3	1510	11	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	175	525	45	569	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2308_CONTIG_1	19	+	532	1	incomplete-splice_match	ACTN4	ENST00000440400	3180	7	1178	1471	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2264_CONTIG_1	2	+	470	1	incomplete-splice_match	PNKD	ENST00000258362	2991	9	2432	90	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4955_CONTIG_1	6	-	967	1	genic_intron	novelGene_371	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6039_CONTIG_1	MT	+	1530	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	29	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_411_CONTIG_1	MT	-	438	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5939_CONTIG_1	MT	+	1263	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	296	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6489_CONTIG_1	MT	+	1534	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6768_CONTIG_1	10	+	1357	1	incomplete-splice_match	ZRANB1	ENST00000359653	5695	9	2536	1803	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	6	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1456_CONTIG_1	14	-	454	1	incomplete-splice_match	CTD-2314B22.3	ENST00000551334	3426	5	2854	119	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3474_CONTIG_1	7	+	922	1	novel_in_catalog	IGFBP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4442_CONTIG_1	6	+	1487	1	incomplete-splice_match	FOXO3	ENST00000343882	7308	4	4723	1099	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7873_CONTIG_1	9	-	828	1	genic_intron	novelGene_236	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5654_CONTIG_1	MT	+	984	1	full-splice_match	MT-ND2	ENST00000361453	1042	1	21	37	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_318_CONTIG_1	1	+	1513	1	antisense	novelGene_NOTCH2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_427_CONTIG_1	1	+	1412	1	genic	CFHR3	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4827_CONTIG_1	3	-	1124	1	incomplete-splice_match	CLDN1	ENST00000295522	3481	4	2275	83	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4674_CONTIG_1	2	+	2486	1	genic_intron	novelGene_62	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	6	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2756_CONTIG_1	20	+	2277	1	novel_in_catalog	LBP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	101	303	1617	1919	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8240_CONTIG_1	6	+	1058	1	incomplete-splice_match	GPR126	ENST00000296932	6849	25	5776	16	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8232_CONTIG_1	MT	+	413	1	full-splice_match	MT-CO3	ENST00000362079	784	1	0	371	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4117_CONTIG_1	5	-	585	1	incomplete-splice_match	CMBL	ENST00000296658	2335	6	1735	16	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8395_CONTIG_1	1	+	457	1	novel_in_catalog	SETDB1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6584_CONTIG_1	14	-	865	1	full-splice_match	RPL7AP6	ENST00000447432	813	1	-11	-41	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	266	798	24	821	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5526_CONTIG_1	11	-	1022	1	intergenic	novelGene_251	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1900_CONTIG_1	3	+	999	1	genic_intron	novelGene_102	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_6747_CONTIG_1	11	+	737	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3848	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5977_CONTIG_1	13	+	715	1	genic_intron	novelGene_642	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_104_CONTIG_1	3	-	1339	1	genic_intron	novelGene_871	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4593_CONTIG_1	12	+	964	1	incomplete-splice_match	C1S	ENST00000402681	2522	11	1556	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	204	612	43	654	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7687_CONTIG_1	1	-	1634	1	genic_intron	novelGene_643	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2589_CONTIG_1	2	+	2077	1	genic_intron	novelGene_859	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2732_CONTIG_1	22	-	1882	1	antisense	novelGene_KIAA1671_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	coding	112	336	711	1046	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1071_CONTIG_1	8	-	834	1	antisense	novelGene_GSDMD_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2134_CONTIG_1	4	-	1044	1	incomplete-splice_match	FAM13A	ENST00000509478	2286	2	858	385	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3252_CONTIG_1	4	-	1148	1	incomplete-splice_match	ACSL1	ENST00000503407	2409	9	1262	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5808_CONTIG_1	13	+	898	1	incomplete-splice_match	MBNL2	ENST00000397601	4487	7	3572	18	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7481_CONTIG_1	11	-	181	1	novel_in_catalog	RP11-872D17.8	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2420_CONTIG_1	7	-	551	1	genic_intron	novelGene_552	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8166_CONTIG_1	4	+	349	1	genic_intron	novelGene_851	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3112_CONTIG_1	X	+	800	1	incomplete-splice_match	GDI1	ENST00000468483	2417	4	1597	21	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7630_CONTIG_1	10	-	442	1	genic_intron	novelGene_718	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7437_CONTIG_1	X	+	1595	1	genic_intron	novelGene_675	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6441_CONTIG_1	5	+	1276	1	genic_intron	novelGene_790	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4900_CONTIG_1	14	-	798	1	genic_intron	novelGene_615	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_346_CONTIG_1	MT	+	704	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	855	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4484_CONTIG_1	14	+	1599	1	antisense	novelGene_MIS18BP1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2489_CONTIG_1	15	+	1846	1	genic_intron	novelGene_578	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6049_CONTIG_1	15	-	1025	1	incomplete-splice_match	GATM	ENST00000396659	2597	9	1568	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6238_CONTIG_1	7	+	1182	1	antisense	novelGene_PDK4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_378_CONTIG_1	3	+	1384	1	incomplete-splice_match	RAB5A	ENST00000273047	2536	6	1147	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7424_CONTIG_1	8	+	845	1	genic_intron	novelGene_149	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7054_CONTIG_1	11	+	519	1	novel_in_catalog	SERPING1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8256_CONTIG_1	17	-	1299	1	genic_intron	novelGene_567	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4267_CONTIG_1	17	+	1941	1	incomplete-splice_match	AP2B1	ENST00000262325	6085	21	4072	73	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2758_CONTIG_1	MT	+	396	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	732	431	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6465_CONTIG_1	20	+	930	1	incomplete-splice_match	SLC2A10	ENST00000359271	4368	5	3335	104	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6798_CONTIG_1	1	+	1234	1	genic_intron	novelGene_623	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1927_CONTIG_1	MT	+	1124	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1884_CONTIG_1	13	-	380	1	genic_intron	novelGene_367	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3360_CONTIG_1	11	+	836	1	full-splice_match	MALAT1	ENST00000544868	4585	1	1	3748	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_627_CONTIG_1	9	+	1267	1	genic_intron	novelGene_704	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8378_CONTIG_1	17	+	594	1	genic_intron	novelGene_415	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7230_CONTIG_1	MT	-	375	1	antisense	novelGene_MT-RNR2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4619_CONTIG_1	4	-	1118	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1121	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	442	891	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5151_CONTIG_1	2	+	762	1	incomplete-splice_match	D2HGDH	ENST00000473126	1612	4	842	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_200_CONTIG_1	3	-	287	1	incomplete-splice_match	SLC2A2	ENST00000497642	2583	10	1474	823	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1994_CONTIG_1	7	+	2026	1	genic_intron	novelGene_651	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7408_CONTIG_1	12	-	1393	1	novel_in_catalog	ANKS1B	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_717_CONTIG_1	12	-	1776	1	novel_in_catalog	CPNE8	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4760_CONTIG_1	1	-	1890	1	full-splice_match	JUN	ENST00000371222	3321	1	70	1361	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	301	903	986	1888	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2536_CONTIG_1	1	+	1529	1	genic_intron	novelGene_60	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3563_CONTIG_1	1	-	460	1	incomplete-splice_match	TOR1AIP2	ENST00000367612	7905	6	6308	1138	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5017_CONTIG_1	3	+	1079	1	incomplete-splice_match	ARL6IP5	ENST00000273258	2101	3	756	267	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1748_CONTIG_1	13	+	1605	1	genic_intron	novelGene_618	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_442_CONTIG_1	2	-	303	1	incomplete-splice_match	SDC1	ENST00000254351	3147	5	2701	144	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6616_CONTIG_1	1	+	2368	1	genic_intron	novelGene_925	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3167_CONTIG_1	6	+	1623	1	genic_intron	novelGene_589	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6479_CONTIG_1	17	+	512	1	incomplete-splice_match	UBB	ENST00000395839	1012	2	499	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	77	231	137	367	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3855_CONTIG_1	1	-	1201	1	intergenic	novelGene_918	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8105_CONTIG_1	4	-	1320	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2326	33	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4579_CONTIG_1	MT	+	1554	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5622_CONTIG_1	2	+	1536	1	antisense	novelGene_PNPT1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2964_CONTIG_1	19	-	688	1	genic_intron	novelGene_111	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8309_CONTIG_1	15	+	1653	1	genic	CYP1A2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	4	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_814_CONTIG_1	3	-	1057	1	incomplete-splice_match	CHDH	ENST00000315251	7665	9	2103	4506	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7891_CONTIG_1	9	-	658	1	genic_intron	novelGene_231	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_5638_CONTIG_1	2	+	578	1	incomplete-splice_match	RIF1	ENST00000428287	7722	35	3712	3433	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2761_CONTIG_1	10	-	1473	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1115	74	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_446_CONTIG_1	11	-	628	1	incomplete-splice_match	APOA1	ENST00000375329	927	2	277	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	158	474	118	591	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1316_CONTIG_1	9	-	1254	1	incomplete-splice_match	BAAT	ENST00000259407	3377	4	2122	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3172_CONTIG_1	2	-	1544	1	incomplete-splice_match	SRD5A2	ENST00000233139	2372	6	819	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4159_CONTIG_1	7	-	1914	1	genic	GIGYF1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7356_CONTIG_1	21	+	1457	1	genic_intron	novelGene_252	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8520_CONTIG_1	MT	+	821	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	690	48	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3354_CONTIG_1	4	+	633	1	antisense	novelGene_FGG_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7994_CONTIG_1	11	+	399	1	incomplete-splice_match	PAFAH1B2	ENST00000527958	4195	6	1630	2167	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6873_CONTIG_1	10	+	2277	1	antisense	novelGene_RP11-483F11.7_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6793_CONTIG_1	1	+	1033	1	genic_intron	novelGene_897	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8031_CONTIG_1	15	+	1271	1	genic_intron	novelGene_369	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7997_CONTIG_1	7	-	2279	1	incomplete-splice_match	GRB10	ENST00000439599	4656	16	2352	26	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5035_CONTIG_1	6	+	1253	1	incomplete-splice_match	IGF2R	ENST00000356956	9091	48	7833	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3816_CONTIG_1	2	+	924	1	novel_in_catalog	ID2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8154_CONTIG_1	2	+	2049	1	antisense	novelGene_SLC40A1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4625_CONTIG_1	11	-	1992	1	novel_in_catalog	SAA4	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6287_CONTIG_1	20	+	1311	1	genic_intron	novelGene_45	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	5	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4178_CONTIG_1	2	+	420	1	genic_intron	novelGene_874	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6436_CONTIG_1	GL000220.1	+	393	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	129	1347	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5507_CONTIG_1	9	-	1297	1	incomplete-splice_match	AK3	ENST00000381809	2736	5	1108	332	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2003_CONTIG_1	6	-	1795	1	genic_intron	novelGene_84	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4234_CONTIG_1	GL000220.1	+	864	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	60	945	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3409_CONTIG_1	7	+	928	1	genic_intron	novelGene_460	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1896_CONTIG_1	10	-	817	1	incomplete-splice_match	FAM171A1	ENST00000378116	3952	8	2941	195	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2777_CONTIG_1	4	-	1128	1	genic_intron	novelGene_881	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1966_CONTIG_1	MT	+	820	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	735	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5629_CONTIG_1	4	-	262	1	genic_intron	novelGene_668	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1199_CONTIG_1	14	-	886	1	full-splice_match	RPL7AP6	ENST00000447432	813	1	-6	-67	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	266	798	19	816	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1777_CONTIG_1	2	+	1057	1	novel_in_catalog	LRRFIP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1178_CONTIG_1	12	+	861	1	genic_intron	novelGene_144	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3602_CONTIG_1	11	+	636	1	genic_intron	novelGene_411	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3462_CONTIG_1	3	-	1511	1	genic_intron	novelGene_815	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3250_CONTIG_1	14	+	2080	1	intergenic	novelGene_599	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2154_CONTIG_1	8	+	1143	1	genic_intron	novelGene_151	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3148_CONTIG_1	6	-	1626	1	genic_intron	novelGene_107	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_7293_CONTIG_1	17	-	807	1	genic_intron	novelGene_400	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8653_CONTIG_1	X	-	1611	1	genic_intron	novelGene_392	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3739_CONTIG_1	6	-	322	1	incomplete-splice_match	SGK1	ENST00000477460	1896	6	1081	494	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5822_CONTIG_1	X	-	695	1	genic_intron	novelGene_362	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4987_CONTIG_1	5	+	1326	1	incomplete-splice_match	ERGIC1	ENST00000393784	2881	10	1104	452	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7982_CONTIG_1	1	+	1807	1	genic_intron	novelGene_864	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6164_CONTIG_1	17	-	814	1	genic_intron	novelGene_49	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6316_CONTIG_1	1	-	1110	1	genic_intron	novelGene_921	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2275_CONTIG_1	10	-	379	1	genic_intron	novelGene_556	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7318_CONTIG_1	14	+	353	1	incomplete-splice_match	DCAF11	ENST00000396941	2402	15	2049	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6404_CONTIG_1	7	-	2012	1	genic_intron	novelGene_652	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6376_CONTIG_1	16	-	1119	1	antisense	novelGene_FUS_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1409_CONTIG_1	MT	-	707	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3281_CONTIG_1	9	+	1551	1	intergenic	novelGene_121	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5973_CONTIG_1	18	+	944	1	genic_intron	novelGene_329	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2236_CONTIG_1	13	-	2115	1	genic_intron	novelGene_648	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7231_CONTIG_1	21	-	1642	1	genic_intron	novelGene_273	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8347_CONTIG_1	3	-	897	1	genic_intron	novelGene_372	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8111_CONTIG_1	20	+	1040	1	genic_intron	novelGene_364	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_73_CONTIG_1	14	+	1284	1	incomplete-splice_match	PAPOLA	ENST00000216277	4519	22	3227	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8271_CONTIG_1	14	-	395	1	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	157	899	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	86	258	137	394	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_298_CONTIG_1	11	+	1200	1	genic_intron	novelGene_445	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2876_CONTIG_1	20	-	798	1	incomplete-splice_match	SDC4	ENST00000372733	2613	5	1302	514	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4572_CONTIG_1	5	-	1694	1	genic_intron	novelGene_723	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6491_CONTIG_1	12	+	564	1	genic_intron	novelGene_451	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_984_CONTIG_1	GL000220.1	+	436	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	365	1068	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4058_CONTIG_1	1	+	2853	1	genic_intron	novelGene_878	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6610_CONTIG_1	4	-	1135	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1074	40	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	489	938	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6651_CONTIG_1	5	-	594	1	incomplete-splice_match	CD74	ENST00000377795	1138	6	540	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3644_CONTIG_1	12	+	1583	1	incomplete-splice_match	TMBIM6	ENST00000395006	2598	9	1013	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1950_CONTIG_1	7	-	276	1	novel_in_catalog	CHCHD3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6652_CONTIG_1	9	+	1081	1	incomplete-splice_match	RGP1	ENST00000378078	7018	9	2111	3827	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1562_CONTIG_1	14	-	378	1	incomplete-splice_match	HSP90AA1	ENST00000216281	3379	11	2515	487	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5849_CONTIG_1	1	+	612	1	genic_intron	novelGene_915	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8479_CONTIG_1	5	+	1591	1	genic	DDX46	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2652_CONTIG_1	8	-	1833	1	novel_in_catalog	LACTB2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4915_CONTIG_1	5	-	1376	1	genic_intron	novelGene_227	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7913_CONTIG_1	11	-	1698	1	antisense	novelGene_TIRAP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6074_CONTIG_1	1	+	1053	1	antisense	novelGene_DPYD_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5304_CONTIG_1	7	+	949	1	incomplete-splice_match	INSIG1	ENST00000344756	2623	6	831	844	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3719_CONTIG_1	1	+	286	1	antisense	novelGene_RP1-187B23.1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3606_CONTIG_1	12	-	1249	1	genic_intron	novelGene_176	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8379_CONTIG_1	20	-	1236	1	genic_intron	novelGene_375	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6144_CONTIG_1	9	+	515	1	novel_in_catalog	PSMD5-AS1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	105	315	187	501	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6903_CONTIG_1	9	-	1247	1	incomplete-splice_match	RBM18	ENST00000417201	4974	6	1249	2479	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2718_CONTIG_1	7	+	319	1	genic_intron	novelGene_765	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_7188_CONTIG_1	11	+	729	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3856	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4395_CONTIG_1	9	+	689	1	genic_intron	novelGene_650	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4967_CONTIG_1	3	+	734	1	genic_intron	novelGene_475	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1811_CONTIG_1	4	+	1475	1	genic	AC107072.2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7459_CONTIG_1	MT	+	1564	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1291_CONTIG_1	MT	-	562	1	antisense	novelGene_MT-ATP6_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7453_CONTIG_1	MT	+	1556	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6668_CONTIG_1	15	+	362	1	genic_intron	novelGene_456	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3886_CONTIG_1	8	-	691	1	incomplete-splice_match	ZNF704	ENST00000327835	14386	9	6603	7093	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3265_CONTIG_1	MT	-	340	1	antisense	novelGene_MT-ND3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4986_CONTIG_1	MT	-	781	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6339_CONTIG_1	16	-	1191	1	genic_intron	novelGene_74	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	95	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_2253_CONTIG_1	17	-	1404	1	genic	ATP2A3	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	107	321	540	860	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4211_CONTIG_1	3	+	615	1	incomplete-splice_match	IL1RAP	ENST00000342550	4490	10	3838	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5504_CONTIG_1	X	-	1480	1	antisense	novelGene_PGK1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2960_CONTIG_1	16	-	1284	1	intergenic	novelGene_53	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8096_CONTIG_1	20	-	1393	1	genic_intron	novelGene_130	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1720_CONTIG_1	14	-	1243	1	incomplete-splice_match	SERPINA1	ENST00000440909	3144	5	1335	567	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	116	348	255	602	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6076_CONTIG_1	20	+	1696	1	genic_intron	novelGene_213	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8142_CONTIG_1	11	+	878	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3707	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2547_CONTIG_1	10	-	915	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1744	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_554_CONTIG_1	MT	+	733	1	full-splice_match	MT-ND2	ENST00000361453	1042	1	300	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7780_CONTIG_1	5	+	1676	1	incomplete-splice_match	NEURL1B	ENST00000369800	6424	5	4707	42	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5915_CONTIG_1	MT	+	523	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1036	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3824_CONTIG_1	Y	-	1412	1	intergenic	novelGene_96	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3251_CONTIG_1	16	+	515	1	incomplete-splice_match	IL4R	ENST00000170630	3446	9	2275	657	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6333_CONTIG_1	15	-	936	1	genic_intron	novelGene_470	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2133_CONTIG_1	1	-	881	1	antisense	novelGene_CFH_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_528_CONTIG_1	14	-	989	1	incomplete-splice_match	SEC23A	ENST00000554615	3813	2	2825	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3622_CONTIG_1	6	+	346	1	genic_intron	novelGene_802	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3991_CONTIG_1	11	+	365	1	intergenic	novelGene_175	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7827_CONTIG_1	16	+	1607	1	incomplete-splice_match	HN1L	ENST00000562684	3185	6	1505	74	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7280_CONTIG_1	6	-	1401	1	incomplete-splice_match	SERINC1	ENST00000339697	3137	10	1693	44	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1821_CONTIG_1	17	-	678	1	genic_intron	novelGene_363	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3763_CONTIG_1	16	-	401	1	antisense	novelGene_MT2A_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2970_CONTIG_1	1	-	544	1	novel_in_catalog	PTP4A2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2337_CONTIG_1	GL000220.1	+	295	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	253	1321	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8574_CONTIG_1	6	+	1235	1	genic_intron	novelGene_100	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5299_CONTIG_1	12	+	1068	1	genic_intron	novelGene_494	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2650_CONTIG_1	3	+	721	1	genic_intron	novelGene_715	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6258_CONTIG_1	4	-	534	1	incomplete-splice_match	HPGD	ENST00000296522	3027	7	2320	174	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3837_CONTIG_1	9	-	728	1	genic_intron	novelGene_649	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2444_CONTIG_1	GL000220.1	+	381	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	0	4689	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2620_CONTIG_1	7	-	1356	1	genic_intron	novelGene_4	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8457_CONTIG_1	12	-	287	1	incomplete-splice_match	ARL1	ENST00000261636	3241	6	2696	259	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8281_CONTIG_1	MT	+	391	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	293	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6757_CONTIG_1	19	+	1426	1	genic_intron	novelGene_331	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5329_CONTIG_1	9	-	1534	1	incomplete-splice_match	APBA1	ENST00000265381	6534	13	2903	2098	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4587_CONTIG_1	15	+	506	1	intergenic	novelGene_199	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1813_CONTIG_1	6	-	1260	1	genic_intron	novelGene_785	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4273_CONTIG_1	13	-	1278	1	novel_in_catalog	STARD13	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1959_CONTIG_1	14	+	1224	1	incomplete-splice_match	RNASE4	ENST00000555597	1341	2	93	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2124_CONTIG_1	11	+	1025	1	full-splice_match	NEAT1	ENST00000501122	22743	1	9171	12547	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1430_CONTIG_1	11	+	1017	1	incomplete-splice_match	TSKU	ENST00000333090	2712	2	1621	75	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6011_CONTIG_1	X	-	1387	1	antisense	novelGene_OTC_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_138_CONTIG_1	11	+	911	1	novel_in_catalog	NNMT	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	143	429	481	909	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4861_CONTIG_1	MT	+	1552	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3559_CONTIG_1	17	-	325	1	genic_intron	novelGene_444	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2662_CONTIG_1	MT	+	1554	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8108_CONTIG_1	3	+	1080	1	novel_in_catalog	ARHGEF26	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	137	411	178	588	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8606_CONTIG_1	X	+	681	1	antisense	novelGene_RP11-357C3.3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7394_CONTIG_1	12	+	1964	1	genic_intron	novelGene_174	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7011_CONTIG_1	7	+	1523	1	incomplete-splice_match	INSIG1	ENST00000344756	2623	6	1098	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7872_CONTIG_1	MT	+	339	1	full-splice_match	MT-ND3	ENST00000361227	346	1	0	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4583_CONTIG_1	9	+	1030	1	novel_in_catalog	PSAT1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5552_CONTIG_1	15	+	1463	1	incomplete-splice_match	THBS1	ENST00000260356	7775	22	4164	2149	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5989_CONTIG_1	2	+	2204	1	genic_intron	novelGene_777	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8701_CONTIG_1	5	+	1903	1	full-splice_match	ADRB2	ENST00000305988	2041	1	30	108	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	378	1134	315	1448	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3978_CONTIG_1	2	-	1039	1	incomplete-splice_match	MAP3K2	ENST00000409947	10992	17	1962	7992	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1112_CONTIG_1	6	+	1929	1	genic_intron	novelGene_557	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7545_CONTIG_1	11	-	418	1	genic_intron	novelGene_336	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_3288_CONTIG_1	14	-	805	1	genic_intron	novelGene_603	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7420_CONTIG_1	10	+	555	1	genic_intron	novelGene_635	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6059_CONTIG_1	2	+	535	1	genic_intron	novelGene_770	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1461_CONTIG_1	MT	+	847	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	507	24	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_932_CONTIG_1	4	-	1580	1	genic_intron	novelGene_804	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5155_CONTIG_1	20	-	350	1	genic_intron	novelGene_244	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1558_CONTIG_1	2	-	1595	1	genic_intron	novelGene_908	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3682_CONTIG_1	8	-	1167	1	genic_intron	novelGene_150	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1091_CONTIG_1	9	+	1350	1	incomplete-splice_match	SLC1A1	ENST00000262352	3722	12	2099	274	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8358_CONTIG_1	4	-	1042	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2003	634	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	188	564	112	675	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3236_CONTIG_1	MT	-	560	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_254_CONTIG_1	X	-	1171	1	full-splice_match	RNF113A	ENST00000371442	1295	1	68	56	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	341	1023	148	1170	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3103_CONTIG_1	16	-	1185	1	genic_intron	novelGene_570	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1905_CONTIG_1	7	-	390	1	genic_intron	novelGene_311	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6470_CONTIG_1	3	-	630	1	incomplete-splice_match	MGLL	ENST00000398104	4187	8	1139	2419	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3934_CONTIG_1	10	+	802	1	genic_intron	novelGene_674	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6519_CONTIG_1	13	-	1359	1	incomplete-splice_match	VPS36	ENST00000378060	4417	14	2091	968	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3413_CONTIG_1	1	-	1408	1	incomplete-splice_match	ERRFI1	ENST00000377482	3104	4	1659	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8537_CONTIG_1	MT	+	1490	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-114	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5080_CONTIG_1	MT	+	236	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	206	1117	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4948_CONTIG_1	1	-	823	1	genic_intron	novelGene_829	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4689_CONTIG_1	16	-	319	1	incomplete-splice_match	PIEZO1	ENST00000518793	660	4	305	37	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1145_CONTIG_1	6	-	877	1	novel_in_catalog	BAG6	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	121	363	513	875	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2836_CONTIG_1	2	+	1021	1	genic_intron	novelGene_780	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7888_CONTIG_1	10	-	1284	1	genic_intron	novelGene_427	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1190_CONTIG_1	1	+	1338	1	genic	AL590714.1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_555_CONTIG_1	GL000220.1	+	563	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	1216	3291	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_116_CONTIG_1	MT	-	405	1	antisense	novelGene_MT-CO3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7874_CONTIG_1	GL000220.1	+	310	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1108	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3282_CONTIG_1	5	+	227	1	incomplete-splice_match	EGR1	ENST00000239938	3138	2	1426	1486	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4250_CONTIG_1	6	+	678	1	genic_intron	novelGene_17	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1037_CONTIG_1	12	+	575	1	genic_intron	novelGene_342	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4766_CONTIG_1	8	-	1977	1	incomplete-splice_match	PAG1	ENST00000220597	10744	9	2377	6391	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8474_CONTIG_1	MT	-	1028	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3041_CONTIG_1	4	-	405	1	incomplete-splice_match	UGT2B4	ENST00000506580	1453	5	876	173	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_776_CONTIG_1	10	-	1622	1	genic_intron	novelGene_198	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8360_CONTIG_1	19	+	1688	1	full-splice_match	JUNB	ENST00000302754	1815	1	-11	138	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	343	1029	300	1328	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7721_CONTIG_1	7	+	1086	1	novel_in_catalog	AC016831.7	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3044_CONTIG_1	5	-	843	1	novel_in_catalog	C6	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3147_CONTIG_1	10	-	347	1	incomplete-splice_match	C10orf10	ENST00000298295	2120	2	897	877	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2597_CONTIG_1	1	+	928	1	genic_intron	novelGene_43	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8006_CONTIG_1	GL000220.1	-	312	1	antisense	novelGene_RNA28S5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5910_CONTIG_1	MT	+	1666	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-290	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1035_CONTIG_1	1	+	1353	1	genic_intron	novelGene_215	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1357_CONTIG_1	9	-	1678	1	genic_intron	novelGene_582	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1186_CONTIG_1	1	-	934	1	genic_intron	novelGene_907	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6967_CONTIG_1	3	+	1319	1	genic_intron	novelGene_884	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	105	315	61	375	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1521_CONTIG_1	14	-	924	1	genic_intron	novelGene_539	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1892_CONTIG_1	7	+	391	1	incomplete-splice_match	IGFBP1	ENST00000457280	1601	4	128	1083	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4435_CONTIG_1	11	+	984	1	antisense	novelGene_SAA2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5020_CONTIG_1	1	+	406	1	genic_intron	novelGene_278	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4817_CONTIG_1	2	+	2015	1	antisense	novelGene_PID1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1754_CONTIG_1	GL000220.1	+	680	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	287	902	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2287_CONTIG_1	17	+	1303	1	genic_intron	novelGene_103	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1234_CONTIG_1	MT	+	1043	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	246	270	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6846_CONTIG_1	18	-	1508	1	novel_in_catalog	CYB5A	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2036_CONTIG_1	1	+	740	1	genic_intron	novelGene_406	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8612_CONTIG_1	11	+	282	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	4303	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5708_CONTIG_1	MT	+	963	1	full-splice_match	MT-ND1	ENST00000361390	956	1	-2	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_821_CONTIG_1	1	-	1979	1	novel_in_catalog	HNRNPR	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8676_CONTIG_1	MT	-	459	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6559_CONTIG_1	1	+	1313	1	genic_intron	novelGene_7	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7710_CONTIG_1	8	+	1167	1	genic	CTD-2647L4.4	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3906_CONTIG_1	5	-	1121	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	1109	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_176_CONTIG_1	1	-	1688	1	genic_intron	novelGene_898	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2049_CONTIG_1	19	+	642	1	incomplete-splice_match	APOE	ENST00000252486	1208	4	380	187	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	178	534	107	640	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7967_CONTIG_1	11	-	1280	1	novel_in_catalog	SAA2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4819_CONTIG_1	18	+	1466	1	genic_intron	novelGene_161	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7045_CONTIG_1	MT	-	261	1	antisense	novelGene_MT-ATP6_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_743_CONTIG_1	14	+	745	1	genic_intron	novelGene_220	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1123_CONTIG_1	11	+	542	1	incomplete-splice_match	APLP2	ENST00000278756	3687	17	2898	248	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_440_CONTIG_1	14	-	280	1	incomplete-splice_match	SEL1L	ENST00000336735	7925	21	5712	1934	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4596_CONTIG_1	21	-	1953	1	genic_intron	novelGene_321	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6167_CONTIG_1	MT	-	1661	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6718_CONTIG_1	3	-	1018	1	full-splice_match	CYP8B1	ENST00000316161	3950	1	2758	174	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5605_CONTIG_1	17	-	1512	1	incomplete-splice_match	SOCS3	ENST00000330871	2729	2	1083	135	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	118	354	539	892	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8231_CONTIG_1	MT	-	541	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4963_CONTIG_1	4	+	975	1	novel_in_catalog	FAM193A	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5356_CONTIG_1	11	+	1256	1	genic_intron	novelGene_338	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6861_CONTIG_1	11	+	489	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	4096	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3315_CONTIG_1	MT	+	492	1	full-splice_match	MT-ATP6	ENST00000361899	681	1	181	8	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5983_CONTIG_1	3	-	1167	1	novel_in_catalog	RP11-432B6.3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7865_CONTIG_1	MT	+	287	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	260	1012	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3065_CONTIG_1	16	+	766	1	incomplete-splice_match	HP	ENST00000398131	1252	5	484	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	170	601	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8386_CONTIG_1	16	+	380	1	incomplete-splice_match	HP	ENST00000565574	1187	5	624	184	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	123	369	10	378	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4137_CONTIG_1	MT	+	1540	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	19	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2999_CONTIG_1	10	+	1297	1	genic_intron	novelGene_763	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5699_CONTIG_1	3	-	448	1	genic_intron	novelGene_381	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5903_CONTIG_1	1	-	259	1	genic_intron	novelGene_899	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_8689_CONTIG_1	3	+	1236	1	genic_intron	novelGene_835	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3919_CONTIG_1	12	-	860	1	full-splice_match	RPLP0	ENST00000551217	677	1	-251	68	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8289_CONTIG_1	10	-	1075	1	incomplete-splice_match	C10orf10	ENST00000298295	2120	2	839	207	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_600_CONTIG_1	9	-	2383	1	novel_in_catalog	ALDOB	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1722_CONTIG_1	MT	+	705	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-21	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6473_CONTIG_1	10	-	2335	1	genic_intron	novelGene_724	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7019_CONTIG_1	5	-	1053	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	1186	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3440_CONTIG_1	9	-	338	1	genic_intron	novelGene_747	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3535_CONTIG_1	17	+	341	1	incomplete-splice_match	SENP3-EIF4A1	ENST00000579777	3520	21	3150	30	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1025_CONTIG_1	MT	+	1659	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-290	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1381_CONTIG_1	6	-	1543	1	genic_intron	novelGene_857	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3034_CONTIG_1	11	-	633	1	incomplete-splice_match	SLC43A3	ENST00000352187	2595	14	1938	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_91_CONTIG_1	6	-	2157	1	novel_in_catalog	DST	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4041_CONTIG_1	3	-	1417	1	genic_intron	novelGene_791	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_5598_CONTIG_1	10	+	1745	1	genic_intron	novelGene_634	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6938_CONTIG_1	3	+	453	1	incomplete-splice_match	PHLDB2	ENST00000486886	2943	6	1208	1283	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2883_CONTIG_1	9	+	1210	1	genic_intron	novelGene_711	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6970_CONTIG_1	15	+	1348	1	genic_intron	novelGene_602	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3241_CONTIG_1	MT	+	708	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-24	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1868_CONTIG_1	17	-	487	1	genic_intron	novelGene_361	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2431_CONTIG_1	12	-	326	1	genic_intron	novelGene_76	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_576_CONTIG_1	11	-	1180	1	antisense	novelGene_MALAT1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4545_CONTIG_1	12	-	1578	1	incomplete-splice_match	SLC38A4	ENST00000447411	3789	16	2090	122	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1147_CONTIG_1	4	-	1159	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1065	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	498	947	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4727_CONTIG_1	1	+	1605	1	incomplete-splice_match	TARDBP	ENST00000240185	2748	6	1121	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1643_CONTIG_1	19	-	424	1	antisense	novelGene_RELB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6796_CONTIG_1	5	-	980	1	novel_in_catalog	RP11-43F13.1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6050_CONTIG_1	5	-	1655	1	novel_in_catalog	C6	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7000_CONTIG_1	15	-	1661	1	antisense	novelGene_PIAS1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8285_CONTIG_1	11	+	281	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	4304	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7708_CONTIG_1	MT	+	616	1	full-splice_match	MT-ND2	ENST00000361453	1042	1	395	31	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2937_CONTIG_1	8	-	1053	1	genic_intron	novelGene_119	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6444_CONTIG_1	15	-	1295	1	incomplete-splice_match	RAB27A	ENST00000336787	2799	7	1464	41	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7968_CONTIG_1	10	-	934	1	incomplete-splice_match	ABLIM1	ENST00000369266	6836	18	1633	4270	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3614_CONTIG_1	15	-	700	1	incomplete-splice_match	BNIP2	ENST00000478981	1415	4	661	55	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1978_CONTIG_1	20	+	344	1	incomplete-splice_match	SLC2A4RG	ENST00000473157	991	5	645	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6177_CONTIG_1	17	+	1214	1	antisense	novelGene_RP11-515O17.2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6447_CONTIG_1	X	+	632	1	incomplete-splice_match	SYAP1	ENST00000380155	6129	9	1358	4140	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_472_CONTIG_1	13	+	1094	1	antisense	novelGene_FGF14_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8264_CONTIG_1	17	-	1143	1	full-splice_match	H3F3B	ENST00000586518	1701	1	1110	-552	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4151_CONTIG_1	9	+	1614	1	genic_intron	novelGene_616	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2648_CONTIG_1	5	-	1835	1	genic_intron	novelGene_821	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2006_CONTIG_1	3	-	1083	1	genic_intron	novelGene_745	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3773_CONTIG_1	20	-	648	1	genic_intron	novelGene_82	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2334_CONTIG_1	MT	+	1663	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-288	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1670_CONTIG_1	3	-	1306	1	genic_intron	novelGene_390	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5221_CONTIG_1	1	+	2040	1	antisense	novelGene_RP1-39G22.7_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1073_CONTIG_1	7	+	1659	1	genic_intron	novelGene_464	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7323_CONTIG_1	2	+	1113	1	genic_intron	novelGene_873	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1780_CONTIG_1	16	+	637	1	incomplete-splice_match	HP	ENST00000398131	1252	5	615	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	39	470	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3798_CONTIG_1	16	+	703	1	incomplete-splice_match	HP	ENST00000398131	1252	5	541	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	113	544	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7332_CONTIG_1	17	+	883	1	intergenic	novelGene_208	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5222_CONTIG_1	19	+	73	1	antisense	novelGene_RPS16_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3878_CONTIG_1	14	-	1286	1	incomplete-splice_match	RDH11	ENST00000381346	2588	7	1210	93	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4433_CONTIG_1	15	+	868	1	intergenic	novelGene_383	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5776_CONTIG_1	12	-	427	1	full-splice_match	UBC	ENST00000536769	3745	1	2084	1234	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	83	249	178	426	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8025_CONTIG_1	15	-	958	1	full-splice_match	DKFZP779J2370	ENST00000378904	2122	1	1399	-235	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4609_CONTIG_1	16	-	1120	1	antisense	novelGene_DHODH_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1965_CONTIG_1	10	-	1709	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	949	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2967_CONTIG_1	GL000220.1	+	471	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1186	212	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7191_CONTIG_1	MT	-	513	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5495_CONTIG_1	10	-	306	1	genic_intron	novelGene_725	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6071_CONTIG_1	15	+	1535	1	incomplete-splice_match	OIP5-AS1	ENST00000500949	8829	4	2721	4574	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5759_CONTIG_1	10	-	1173	1	incomplete-splice_match	PIP4K2A	ENST00000376573	3802	10	1999	631	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8353_CONTIG_1	3	-	1327	1	incomplete-splice_match	TMF1	ENST00000398559	6849	17	3471	2052	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5104_CONTIG_1	6	-	877	1	incomplete-splice_match	ELOVL5	ENST00000304434	2827	8	1923	28	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3161_CONTIG_1	4	-	913	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1163	173	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	400	849	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8297_CONTIG_1	5	+	1532	1	genic_intron	novelGene_792	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_294_CONTIG_1	19	-	379	1	incomplete-splice_match	EEF2	ENST00000309311	3164	15	2474	312	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8398_CONTIG_1	14	-	800	1	genic_intron	novelGene_484	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7414_CONTIG_1	10	-	333	1	incomplete-splice_match	C10orf10	ENST00000298295	2120	2	1127	661	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6040_CONTIG_1	18	+	1975	1	novel_in_catalog	NDUFV2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_251_CONTIG_1	11	-	445	1	novel_in_catalog	SLC1A2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8575_CONTIG_1	6	+	406	1	genic_intron	novelGene_772	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3083_CONTIG_1	8	-	427	1	genic_intron	novelGene_738	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8296_CONTIG_1	5	-	1572	1	genic_intron	novelGene_228	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3675_CONTIG_1	5	+	1974	1	novel_in_catalog	IQGAP2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4580_CONTIG_1	4	-	866	1	genic	ADH4	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1335_CONTIG_1	7	-	1503	1	genic_intron	novelGene_348	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3152_CONTIG_1	1	-	358	1	incomplete-splice_match	TPM3	ENST00000341372	2007	8	1460	190	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6597_CONTIG_1	16	-	1712	1	antisense	novelGene_IQCK_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7691_CONTIG_1	1	-	655	1	incomplete-splice_match	ALDH4A1	ENST00000538839	2957	14	2178	125	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7677_CONTIG_1	2	+	1867	1	genic_intron	novelGene_443	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_306_CONTIG_1	MT	-	955	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_853_CONTIG_1	1	+	853	1	incomplete-splice_match	GPSM2	ENST00000406462	7433	16	2947	3634	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2103_CONTIG_1	10	+	213	1	incomplete-splice_match	ZSWIM8	ENST00000466354	630	3	252	166	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2851_CONTIG_1	4	+	539	1	novel_in_catalog	FGB	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5114_CONTIG_1	11	+	644	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3941	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4975_CONTIG_1	22	-	715	1	genic_intron	novelGene_146	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6169_CONTIG_1	14	-	1116	1	genic_intron	novelGene_222	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6871_CONTIG_1	10	+	1352	1	genic_intron	novelGene_683	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_325_CONTIG_1	17	-	642	1	genic_intron	novelGene_19	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1701_CONTIG_1	10	-	568	1	genic_intron	novelGene_685	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4092_CONTIG_1	18	-	1226	1	genic_intron	novelGene_162	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7337_CONTIG_1	17	+	1079	1	genic_intron	novelGene_281	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_391_CONTIG_1	19	+	546	1	genic_intron	novelGene_272	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2705_CONTIG_1	11	+	1958	1	full-splice_match	MALAT1	ENST00000544868	4585	1	-1283	3910	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_515_CONTIG_1	MT	+	1536	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-289	131	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2100_CONTIG_1	7	+	383	1	genic_intron	novelGene_787	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5696_CONTIG_1	17	+	622	1	full-splice_match	RPS7P1	ENST00000465875	585	1	-44	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	192	576	45	620	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4924_CONTIG_1	GL000220.1	+	356	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	938	575	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_430_CONTIG_1	10	-	1362	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1063	237	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4789_CONTIG_1	4	-	436	1	full-splice_match	AC004057.1	ENST00000539199	442	1	8	-2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	95	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6640_CONTIG_1	16	-	811	1	genic_intron	novelGene_93	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3379_CONTIG_1	16	+	812	1	incomplete-splice_match	HP	ENST00000398131	1252	5	434	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	144	432	220	651	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6042_CONTIG_1	17	-	397	1	genic_intron	novelGene_538	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5841_CONTIG_1	1	+	535	1	genic_intron	novelGene_428	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3725_CONTIG_1	3	+	626	1	genic_intron	novelGene_889	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7578_CONTIG_1	7	-	1384	1	genic_intron	novelGene_702	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8071_CONTIG_1	GL000220.1	+	498	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	914	457	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2561_CONTIG_1	MT	+	1141	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3918_CONTIG_1	GL000220.1	+	368	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	230	1271	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4457_CONTIG_1	MT	+	366	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	988	24	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4453_CONTIG_1	1	+	1127	1	genic_intron	novelGene_887	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7051_CONTIG_1	GL000220.1	+	294	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1126	449	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8359_CONTIG_1	MT	-	415	1	antisense	novelGene_MT-CO3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6292_CONTIG_1	10	-	1561	1	incomplete-splice_match	NT5C2	ENST00000404739	3365	17	1799	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_976_CONTIG_1	12	-	2455	1	full-splice_match	GOLGA2P5	ENST00000546413	2935	1	374	106	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1790_CONTIG_1	16	+	895	1	incomplete-splice_match	HP	ENST00000398131	1252	5	355	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	228	684	47	730	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_66_CONTIG_1	5	-	709	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	1444	91	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8052_CONTIG_1	6	+	1533	1	genic_intron	novelGene_42	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_8739_CONTIG_1	MT	+	1140	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5112_CONTIG_1	1	-	1721	1	incomplete-splice_match	PPAP2B	ENST00000371250	3292	6	1555	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4355_CONTIG_1	GL000220.1	+	265	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1157	447	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2646_CONTIG_1	MT	+	747	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	812	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6077_CONTIG_1	11	+	676	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3909	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6142_CONTIG_1	2	-	1370	1	antisense	novelGene_AC073410.1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7029_CONTIG_1	MT	-	1579	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2897_CONTIG_1	19	+	483	1	genic_intron	novelGene_18	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1688_CONTIG_1	16	+	1482	1	genic_intron	novelGene_585	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5566_CONTIG_1	12	+	1493	1	antisense	novelGene_A2M_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3323_CONTIG_1	7	-	1016	1	incomplete-splice_match	NAMPT	ENST00000222553	4582	11	1720	1847	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4603_CONTIG_1	2	+	1723	1	antisense	novelGene_COBLL1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2843_CONTIG_1	1	-	1616	1	antisense	novelGene_CFHR3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4391_CONTIG_1	MT	+	1558	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_86_CONTIG_1	9	-	949	1	incomplete-splice_match	RAB14	ENST00000373840	4145	8	1966	1231	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1470_CONTIG_1	19	-	245	1	genic_intron	novelGene_37	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_45_CONTIG_1	3	+	579	1	genic_intron	novelGene_457	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5562_CONTIG_1	6	-	572	1	genic_intron	novelGene_606	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1862_CONTIG_1	6	+	1597	1	genic_intron	novelGene_822	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8627_CONTIG_1	15	+	966	1	genic	CYP1A2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1723_CONTIG_1	5	+	1847	1	antisense	novelGene_CTB-89H12.4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5865_CONTIG_1	3	-	378	1	novel_in_catalog	SCAP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3889_CONTIG_1	MT	-	1668	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2365_CONTIG_1	5	+	2047	1	genic_intron	novelGene_297	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7498_CONTIG_1	19	+	489	1	incomplete-splice_match	SPHK2	ENST00000600537	2136	7	1527	121	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	114	342	122	463	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1209_CONTIG_1	20	+	901	1	genic_intron	novelGene_91	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6845_CONTIG_1	8	-	1701	1	genic_intron	novelGene_302	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1296_CONTIG_1	14	-	2286	1	genic_intron	novelGene_624	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3069_CONTIG_1	9	-	499	1	intergenic	novelGene_708	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1576_CONTIG_1	2	+	1385	1	genic_intron	novelGene_909	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8073_CONTIG_1	1	+	458	1	incomplete-splice_match	HFE2	ENST00000475797	1381	2	912	12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2152_CONTIG_1	11	+	572	1	antisense	novelGene_HPX_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2792_CONTIG_1	19	-	1051	1	novel_in_catalog	KHSRP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8403_CONTIG_1	15	+	404	1	incomplete-splice_match	RP11-697E2.6	ENST00000561573	3838	13	3363	72	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7608_CONTIG_1	MT	+	484	1	full-splice_match	MT-CO3	ENST00000362079	784	1	266	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7044_CONTIG_1	MT	+	805	1	full-splice_match	MT-ND1	ENST00000361390	956	1	129	22	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_198_CONTIG_1	17	-	564	1	genic_intron	novelGene_181	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4783_CONTIG_1	MT	-	708	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1816_CONTIG_1	4	+	806	1	genic_intron	novelGene_12	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_752_CONTIG_1	X	+	600	1	novel_in_catalog	PLS3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5323_CONTIG_1	1	+	815	1	genic_intron	novelGene_507	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_680_CONTIG_1	10	+	738	1	incomplete-splice_match	WBP1L	ENST00000448841	4085	4	3277	71	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5266_CONTIG_1	GL000220.1	+	679	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	328	862	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2180_CONTIG_1	6	+	1374	1	genic_intron	novelGene_703	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3939_CONTIG_1	9	+	819	1	genic_intron	novelGene_265	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8448_CONTIG_1	1	-	626	1	genic_intron	novelGene_906	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_592_CONTIG_1	GL000220.1	+	863	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	402	604	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8696_CONTIG_1	MT	+	658	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	38	863	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_242_CONTIG_1	6	+	1138	1	incomplete-splice_match	E2F3	ENST00000535432	4145	7	1586	1422	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6681_CONTIG_1	3	+	1389	1	novel_in_catalog	LINC00969	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7546_CONTIG_1	12	+	1769	1	genic_intron	novelGene_133	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7032_CONTIG_1	3	-	2303	1	genic_intron	novelGene_442	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8487_CONTIG_1	GL000220.1	+	486	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	135	1248	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8432_CONTIG_1	12	+	524	1	genic_intron	novelGene_632	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5254_CONTIG_1	11	+	512	1	genic_intron	novelGene_21	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1832_CONTIG_1	20	-	385	1	antisense	novelGene_LBP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3884_CONTIG_1	MT	+	770	1	full-splice_match	MT-CO3	ENST00000362079	784	1	0	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_274_CONTIG_1	17	-	1193	1	novel_in_catalog	C17orf58	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2248_CONTIG_1	7	+	424	1	genic_intron	novelGene_787	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_7821_CONTIG_1	4	-	1582	1	antisense	novelGene_FGB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1599_CONTIG_1	11	-	925	1	genic_intron	novelGene_728	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4127_CONTIG_1	7	+	913	1	incomplete-splice_match	EIF4H	ENST00000353999	2503	6	1582	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1569_CONTIG_1	MT	+	475	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	75	1009	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2778_CONTIG_1	2	-	1709	1	novel_in_catalog	CWC22	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5550_CONTIG_1	MT	+	1505	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	54	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6098_CONTIG_1	2	-	1088	1	genic_intron	novelGene_912	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7325_CONTIG_1	16	+	1093	1	antisense	novelGene_CARHSP1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	coding	159	477	209	685	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4372_CONTIG_1	4	+	776	1	genic_intron	novelGene_805	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_393_CONTIG_1	MT	-	921	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3304_CONTIG_1	2	-	1324	1	genic_intron	novelGene_902	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1259_CONTIG_1	5	-	658	1	incomplete-splice_match	CSNK1A1	ENST00000377843	3065	10	1643	765	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6354_CONTIG_1	12	+	1231	1	antisense	novelGene_SDS_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3802_CONTIG_1	16	-	435	1	intergenic	novelGene_219	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2329_CONTIG_1	5	-	1159	1	genic_intron	novelGene_486	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3588_CONTIG_1	1	+	1383	1	genic_intron	novelGene_408	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5383_CONTIG_1	GL000220.1	+	364	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1054	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2159_CONTIG_1	MT	+	1642	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-288	24	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3738_CONTIG_1	12	-	1008	1	novel_in_catalog	CCNT1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1616_CONTIG_1	X	-	1211	1	genic	POF1B	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_869_CONTIG_1	13	-	1060	1	genic_intron	novelGene_239	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1437_CONTIG_1	9	+	669	1	genic_intron	novelGene_639	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3703_CONTIG_1	11	-	1890	1	genic	C11orf71	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4560_CONTIG_1	13	-	766	1	incomplete-splice_match	EDNRB	ENST00000446573	2530	7	1720	45	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_522_CONTIG_1	3	-	1878	1	genic_intron	novelGene_836	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	166	498	911	1408	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_345_CONTIG_1	11	+	1106	1	genic	CDC42EP2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	122	366	192	557	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_81_CONTIG_1	1	-	1521	1	genic_intron	novelGene_440	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1298_CONTIG_1	20	-	1677	1	genic_intron	novelGene_373	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8466_CONTIG_1	14	-	1075	1	incomplete-splice_match	ZFP36L1	ENST00000555997	3094	2	731	1289	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	73	219	270	488	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6005_CONTIG_1	12	+	655	1	genic_intron	novelGene_343	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5088_CONTIG_1	5	-	481	1	incomplete-splice_match	TMEM167A	ENST00000502346	4630	4	3914	236	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_60_CONTIG_1	X	+	1078	1	genic_intron	novelGene_315	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5632_CONTIG_1	21	-	1687	1	incomplete-splice_match	RIPK4	ENST00000332512	3889	8	2187	16	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7875_CONTIG_1	GL000220.1	+	549	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	4015	506	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6111_CONTIG_1	5	-	649	1	genic_intron	novelGene_813	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8164_CONTIG_1	6	-	942	1	genic_intron	novelGene_393	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_765_CONTIG_1	10	-	1821	1	genic_intron	novelGene_681	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_1830_CONTIG_1	12	+	2355	1	genic_intron	novelGene_700	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	100	300	389	688	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2630_CONTIG_1	6	+	1646	1	genic_intron	novelGene_838	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8581_CONTIG_1	2	-	322	1	genic_intron	novelGene_782	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1565_CONTIG_1	20	-	564	1	intergenic	novelGene_22	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2011_CONTIG_1	20	+	938	1	intergenic	novelGene_262	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7297_CONTIG_1	9	-	884	1	incomplete-splice_match	BAAT	ENST00000259407	3377	4	2465	29	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7382_CONTIG_1	20	+	435	1	full-splice_match	RPL41P1	ENST00000546176	306	1	-1	-128	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8086_CONTIG_1	GL000220.1	+	211	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1194	464	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6162_CONTIG_1	15	-	1870	1	genic_intron	novelGene_608	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3765_CONTIG_1	4	-	932	1	novel_in_catalog	CFI	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8439_CONTIG_1	MT	-	585	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5954_CONTIG_1	22	+	759	1	incomplete-splice_match	SERPIND1	ENST00000215727	2437	5	1617	62	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8582_CONTIG_1	6	-	527	1	genic	UNC5CL	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3121_CONTIG_1	3	+	1115	1	genic_intron	novelGene_540	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2714_CONTIG_1	21	+	246	1	intergenic	novelGene_55	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6129_CONTIG_1	7	-	1218	1	genic_intron	novelGene_97	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_912_CONTIG_1	11	-	779	1	incomplete-splice_match	PPP2R1B	ENST00000527614	5587	15	2213	2596	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1784_CONTIG_1	5	-	1187	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	865	192	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3831_CONTIG_1	MT	+	1558	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2510_CONTIG_1	1	-	895	1	incomplete-splice_match	NRAS	ENST00000369535	4449	7	3526	29	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_611_CONTIG_1	1	-	1685	1	incomplete-splice_match	IRF2BP2	ENST00000366610	4615	2	1395	1536	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6850_CONTIG_1	3	+	1363	1	novel_in_catalog	EIF1B	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3638_CONTIG_1	4	-	1588	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	623	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	419	1257	133	1389	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6583_CONTIG_1	19	+	272	1	incomplete-splice_match	FTL	ENST00000331825	878	4	6	601	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5559_CONTIG_1	MT	+	1564	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7485_CONTIG_1	MT	+	699	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3322_CONTIG_1	MT	+	1545	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3925_CONTIG_1	6	+	553	1	incomplete-splice_match	AKAP12	ENST00000359755	6190	3	3913	1725	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4868_CONTIG_1	18	+	2103	1	genic_intron	novelGene_487	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7179_CONTIG_1	4	-	945	1	genic_intron	novelGene_694	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1872_CONTIG_1	8	-	710	1	genic_intron	novelGene_115	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3897_CONTIG_1	3	+	1475	1	antisense	novelGene_ALDH1L1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	100	300	1048	1347	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8638_CONTIG_1	7	-	1551	1	novel_in_catalog	BCL7B	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_777_CONTIG_1	2	-	294	1	genic_intron	novelGene_880	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8453_CONTIG_1	MT	+	1521	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3587_CONTIG_1	2	+	895	1	genic_intron	novelGene_910	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1767_CONTIG_1	4	-	1034	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1181	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	382	831	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8748_CONTIG_1	MT	+	1124	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_299_CONTIG_1	8	-	1205	1	genic_intron	novelGene_118	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4089_CONTIG_1	7	-	1512	1	genic_intron	novelGene_680	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1141_CONTIG_1	2	+	588	1	genic_intron	novelGene_877	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4697_CONTIG_1	12	+	1962	1	genic	INHBC	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4696_CONTIG_1	7	+	1917	1	novel_in_catalog	CAV2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3819_CONTIG_1	13	-	1290	1	genic_intron	novelGene_653	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6872_CONTIG_1	10	+	2445	1	genic_intron	novelGene_654	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1909_CONTIG_1	MT	+	1529	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	30	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2023_CONTIG_1	4	-	1595	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	592	62	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	419	1257	164	1420	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_925_CONTIG_1	GL000220.1	+	353	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	568	948	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7315_CONTIG_1	3	-	563	1	genic_intron	novelGene_885	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2942_CONTIG_1	GL000220.1	+	484	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	4033	553	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3267_CONTIG_1	2	+	1257	1	antisense	novelGene_AC011747.7_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5861_CONTIG_1	GL000220.1	+	345	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	336	1188	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2721_CONTIG_1	2	+	1862	1	antisense	novelGene_PNPT1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8534_CONTIG_1	12	-	2167	1	novel_in_catalog	HAL	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3509_CONTIG_1	1	+	343	1	incomplete-splice_match	VWA1	ENST00000338660	2147	3	1389	416	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5039_CONTIG_1	5	-	550	1	genic_intron	novelGene_779	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2082_CONTIG_1	11	+	1934	1	antisense	novelGene_RP11-91P24.7_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6664_CONTIG_1	MT	+	1438	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	121	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6561_CONTIG_1	MT	+	1558	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2043_CONTIG_1	19	-	1529	1	incomplete-splice_match	LRG1	ENST00000306390	3036	2	892	616	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	84	252	360	611	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7852_CONTIG_1	17	+	1570	1	full-splice_match	C17orf100	ENST00000391428	1821	1	112	139	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5374_CONTIG_1	17	-	693	1	novel_in_catalog	KANSL1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8323_CONTIG_1	21	-	1306	1	antisense	novelGene_IFNGR2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_634_CONTIG_1	1	-	917	1	genic_intron	novelGene_893	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_856_CONTIG_1	8	-	341	1	incomplete-splice_match	BIN3	ENST00000276416	1835	9	1329	166	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5745_CONTIG_1	19	-	1011	1	genic_intron	novelGene_106	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8001_CONTIG_1	MT	+	1559	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3915_CONTIG_1	13	-	1581	1	novel_in_catalog	ZC3H13	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2010_CONTIG_1	12	-	506	1	full-splice_match	UBC	ENST00000536769	3745	1	2226	1013	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	157	471	36	506	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1894_CONTIG_1	22	+	1301	1	full-splice_match	H1F0	ENST00000340857	2329	1	689	339	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_642_CONTIG_1	11	+	379	1	genic_intron	novelGene_714	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2476_CONTIG_1	8	+	1003	1	genic_intron	novelGene_159	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7795_CONTIG_1	16	+	794	1	incomplete-splice_match	HP	ENST00000565574	1187	5	310	84	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	228	684	72	755	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7603_CONTIG_1	6	+	920	1	full-splice_match	FKBP1C	ENST00000370659	1579	1	91	568	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	coding	108	324	21	344	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4271_CONTIG_1	GL000220.1	+	278	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1140	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3541_CONTIG_1	MT	+	1465	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	94	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_297_CONTIG_1	MT	-	675	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3332_CONTIG_1	MT	+	1367	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	192	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5686_CONTIG_1	MT	-	1140	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5292_CONTIG_1	17	-	758	1	genic_intron	novelGene_454	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2229_CONTIG_1	14	-	708	1	genic_intron	novelGene_221	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1591_CONTIG_1	12	-	1049	1	incomplete-splice_match	GXYLT1	ENST00000398675	7497	8	4912	1537	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3484_CONTIG_1	11	+	748	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3837	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7443_CONTIG_1	19	+	984	1	antisense	novelGene_EEF2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1310_CONTIG_1	19	+	1457	1	full-splice_match	IER2	ENST00000588173	2934	1	1465	12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	128	384	33	416	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6246_CONTIG_1	1	-	605	1	novel_in_catalog	HECTD3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2069_CONTIG_1	7	-	351	1	incomplete-splice_match	IGFBP3	ENST00000381086	2217	6	1267	600	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_222_CONTIG_1	17	+	529	1	genic_intron	novelGene_86	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7871_CONTIG_1	13	-	1750	1	incomplete-splice_match	LCP1	ENST00000323076	3787	16	1990	48	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6944_CONTIG_1	16	+	326	1	incomplete-splice_match	CES1P1	ENST00000427184	945	6	610	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5001_CONTIG_1	10	-	882	1	incomplete-splice_match	YME1L1	ENST00000376016	3856	19	2920	55	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2920_CONTIG_1	1	+	2183	1	genic	SDHC	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8084_CONTIG_1	1	-	1420	1	antisense	novelGene_CFHR3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5524_CONTIG_1	2	-	184	1	incomplete-splice_match	RNF149	ENST00000295317	2458	7	1667	608	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3540_CONTIG_1	8	-	382	1	genic_intron	novelGene_148	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_655_CONTIG_1	10	-	927	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1733	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3118_CONTIG_1	12	-	1037	1	novel_in_catalog	CCNT1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6410_CONTIG_1	19	+	1033	1	genic_intron	novelGene_33	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4254_CONTIG_1	10	+	283	1	genic_intron	novelGene_778	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5762_CONTIG_1	1	+	534	1	genic_intron	novelGene_588	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7404_CONTIG_1	13	+	442	1	incomplete-splice_match	ITM2B	ENST00000378565	2104	6	947	716	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3233_CONTIG_1	4	-	761	1	genic_intron	novelGene_837	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5639_CONTIG_1	13	+	2246	1	novel_in_catalog	COG3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7995_CONTIG_1	18	-	964	1	incomplete-splice_match	ZNF24	ENST00000399061	6282	4	2268	3051	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2073_CONTIG_1	11	+	1502	1	genic_intron	novelGene_58	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4873_CONTIG_1	10	+	440	1	incomplete-splice_match	DHTKD1	ENST00000263035	5159	17	4581	139	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2470_CONTIG_1	MT	+	471	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	96	992	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_676_CONTIG_1	1	-	1400	1	incomplete-splice_match	NADK	ENST00000341991	3098	12	1664	35	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_973_CONTIG_1	15	+	1423	1	antisense	novelGene_RP11-330L19.2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5393_CONTIG_1	12	-	1604	1	genic_intron	novelGene_742	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1518_CONTIG_1	7	-	723	1	genic_intron	novelGene_818	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7863_CONTIG_1	MT	+	1477	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	82	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6168_CONTIG_1	6	+	522	1	genic_intron	novelGene_809	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3222_CONTIG_1	10	-	833	1	incomplete-splice_match	ANK3	ENST00000373827	7202	44	6274	96	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5468_CONTIG_1	19	-	361	1	incomplete-splice_match	C19orf10	ENST00000262947	1018	6	656	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	5	15	322	336	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4379_CONTIG_1	16	+	319	1	incomplete-splice_match	HP	ENST00000565574	1187	5	600	269	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	95	285	34	318	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2295_CONTIG_1	19	+	430	1	incomplete-splice_match	PTBP1	ENST00000350092	2201	7	1740	32	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5600_CONTIG_1	MT	+	1560	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6687_CONTIG_1	MT	-	709	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3560_CONTIG_1	MT	+	1539	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	20	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4700_CONTIG_1	2	+	508	1	genic_intron	novelGene_923	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8172_CONTIG_1	10	-	609	1	genic_intron	novelGene_15	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5962_CONTIG_1	MT	-	1548	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2168_CONTIG_1	MT	-	1178	1	antisense	novelGene_MT-ND5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_867_CONTIG_1	12	-	609	1	full-splice_match	UBC	ENST00000536769	3745	1	2689	447	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	193	579	29	607	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_63_CONTIG_1	2	+	1272	1	intergenic	novelGene_131	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_906_CONTIG_1	MT	-	730	1	full-splice_match	MT-ND6	ENST00000361681	525	1	200	-405	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7160_CONTIG_1	12	+	613	1	incomplete-splice_match	C1S	ENST00000402681	2522	11	1511	399	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	175	525	88	612	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1412_CONTIG_1	11	-	1548	1	antisense	novelGene_HINFP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_409_CONTIG_1	1	-	481	1	incomplete-splice_match	AGT	ENST00000366667	2291	5	1504	307	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2238_CONTIG_1	19	+	699	1	novel_in_catalog	ANGPTL4	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	117	351	167	517	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5256_CONTIG_1	X	-	1212	1	genic_intron	novelGene_237	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5253_CONTIG_1	4	+	314	1	genic_intron	novelGene_849	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5863_CONTIG_1	MT	-	939	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7713_CONTIG_1	6	-	1534	1	genic_intron	novelGene_808	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3874_CONTIG_1	11	+	1936	1	full-splice_match	MALAT1	ENST00000544868	4585	1	-1283	3932	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1866_CONTIG_1	2	+	159	1	genic_intron	novelGene_894	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_476_CONTIG_1	MT	+	1217	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	160	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2001_CONTIG_1	1	+	1112	1	genic_intron	novelGene_855	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3076_CONTIG_1	10	-	1132	1	incomplete-splice_match	PSAP	ENST00000394934	2825	14	1692	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6027_CONTIG_1	22	-	1021	1	incomplete-splice_match	ST13	ENST00000216218	3595	12	2391	184	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5117_CONTIG_1	2	+	909	1	genic_intron	novelGene_268	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4400_CONTIG_1	4	-	706	1	genic_intron	novelGene_800	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1350_CONTIG_1	1	-	1261	1	incomplete-splice_match	CRP	ENST00000255030	2015	2	751	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7971_CONTIG_1	12	+	396	1	genic_intron	novelGene_630	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4602_CONTIG_1	15	+	333	1	genic	CYP1A2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7371_CONTIG_1	9	-	1110	1	genic_intron	novelGene_99	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2772_CONTIG_1	13	+	616	1	genic_intron	novelGene_292	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6622_CONTIG_1	X	+	669	1	incomplete-splice_match	IL13RA1	ENST00000371666	4036	11	3362	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4968_CONTIG_1	11	+	637	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3948	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6079_CONTIG_1	8	+	780	1	genic_intron	novelGene_116	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1575_CONTIG_1	12	+	1356	1	genic_intron	novelGene_727	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5180_CONTIG_1	12	-	508	1	genic_intron	novelGene_368	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6179_CONTIG_1	GL000220.1	+	217	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	227	1425	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_941_CONTIG_1	11	+	2047	1	incomplete-splice_match	TSPAN18	ENST00000520358	3316	10	1250	20	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6807_CONTIG_1	3	+	271	1	genic_intron	novelGene_437	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1395_CONTIG_1	17	-	291	1	incomplete-splice_match	ACOX1	ENST00000293217	7514	14	2833	4391	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_268_CONTIG_1	6	+	1237	1	genic_intron	novelGene_447	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7869_CONTIG_1	16	-	2241	1	full-splice_match	SEPHS2	ENST00000478753	2551	1	307	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	330	990	502	1491	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8169_CONTIG_1	15	+	833	1	genic_intron	novelGene_612	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_117_CONTIG_1	9	+	1386	1	genic_intron	novelGene_238	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_897_CONTIG_1	MT	-	975	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2065_CONTIG_1	3	-	872	1	genic_intron	novelGene_858	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2132_CONTIG_1	MT	-	1092	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8209_CONTIG_1	MT	-	1392	1	antisense	novelGene_MT-ND5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2933_CONTIG_1	18	+	1240	1	genic_intron	novelGene_303	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4085_CONTIG_1	11	-	543	1	genic_intron	novelGene_243	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3892_CONTIG_1	1	-	947	1	incomplete-splice_match	ERO1LB	ENST00000354619	4567	16	2911	710	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4751_CONTIG_1	MT	+	1478	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	81	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6740_CONTIG_1	7	-	1022	1	incomplete-splice_match	RAPGEF5	ENST00000401957	6159	16	5065	73	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4087_CONTIG_1	4	+	1236	1	intergenic	novelGene_844	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5599_CONTIG_1	MT	-	917	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_829_CONTIG_1	MT	+	1664	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-289	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_121_CONTIG_1	12	-	1147	1	genic_intron	novelGene_164	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1847_CONTIG_1	8	+	340	1	genic_intron	novelGene_147	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4361_CONTIG_1	12	+	1506	1	incomplete-splice_match	TMBIM6	ENST00000547798	2494	8	886	103	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2319_CONTIG_1	17	+	660	1	full-splice_match	RPS7P1	ENST00000393464	647	1	-18	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	194	582	45	626	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4031_CONTIG_1	20	+	975	1	incomplete-splice_match	SLC2A10	ENST00000359271	4368	5	2386	1008	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_990_CONTIG_1	MT	+	658	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	26	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8050_CONTIG_1	MT	-	702	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2667_CONTIG_1	14	+	473	1	novel_in_catalog	RP11-986E7.7	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6487_CONTIG_1	4	-	1303	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	909	37	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	654	1103	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3904_CONTIG_1	12	-	1072	1	novel_in_catalog	CCNT1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7484_CONTIG_1	8	+	589	1	genic_intron	novelGene_71	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3811_CONTIG_1	4	-	751	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2910	18	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4094_CONTIG_1	3	+	1761	1	genic_intron	novelGene_825	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7161_CONTIG_1	17	-	729	1	incomplete-splice_match	SOCS3	ENST00000330871	2729	2	1967	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1093_CONTIG_1	GL000220.1	+	1337	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	73	459	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6733_CONTIG_1	19	-	1431	1	genic_intron	novelGene_332	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4536_CONTIG_1	8	+	1281	1	full-splice_match	RP11-116B19.2	ENST00000522790	310	1	-172	-799	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_587_CONTIG_1	18	-	1489	1	genic_intron	novelGene_195	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7826_CONTIG_1	2	-	1260	1	genic_intron	novelGene_548	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_199_CONTIG_1	17	-	381	1	antisense	novelGene_TAOK1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2131_CONTIG_1	MT	+	510	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	328	540	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_390_CONTIG_1	7	-	1741	1	genic_intron	novelGene_768	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_296_CONTIG_1	1	+	1162	1	antisense	novelGene_DPYD_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4432_CONTIG_1	13	+	1803	1	genic_intron	novelGene_346	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4259_CONTIG_1	13	-	395	1	genic_intron	novelGene_662	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2025_CONTIG_1	7	-	1322	1	genic_intron	novelGene_525	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6720_CONTIG_1	12	+	1009	1	antisense	novelGene_TNFRSF1A_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8675_CONTIG_1	12	-	1179	1	novel_in_catalog	SCAF11	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6506_CONTIG_1	4	+	661	1	genic_intron	novelGene_280	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3473_CONTIG_1	16	+	265	1	genic_intron	novelGene_601	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8413_CONTIG_1	2	-	624	1	genic_intron	novelGene_781	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7762_CONTIG_1	22	+	832	1	incomplete-splice_match	PPARA	ENST00000262735	9965	8	6697	2437	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6033_CONTIG_1	14	-	269	1	incomplete-splice_match	DAD1	ENST00000250498	731	3	43	420	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4444_CONTIG_1	4	-	1828	1	novel_in_catalog	FGA	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3431_CONTIG_1	10	-	1277	1	genic_intron	novelGene_377	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2491_CONTIG_1	17	+	1154	1	genic_intron	novelGene_360	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7938_CONTIG_1	MT	+	1561	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5582_CONTIG_1	MT	+	1138	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5679_CONTIG_1	7	+	407	1	genic_intron	novelGene_787	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5223_CONTIG_1	19	+	1141	1	incomplete-splice_match	ATF5	ENST00000423777	2069	3	813	116	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	106	318	93	410	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4537_CONTIG_1	17	+	1581	1	novel_in_catalog	SLC47A1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1972_CONTIG_1	MT	+	265	1	full-splice_match	MT-CO1	ENST00000361624	1542	1	275	1002	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5790_CONTIG_1	MT	+	2239	1	full-splice_match	MT-ND5	ENST00000361567	1812	1	0	-427	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5569_CONTIG_1	5	+	1478	1	genic_intron	novelGene_832	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6222_CONTIG_1	20	-	1986	1	incomplete-splice_match	SDC4	ENST00000372733	2613	5	555	73	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1435_CONTIG_1	5	+	677	1	genic_intron	novelGene_875	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_203_CONTIG_1	4	-	2216	1	genic_intron	novelGene_799	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_418_CONTIG_1	12	-	1668	1	novel_in_catalog	A2M	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8346_CONTIG_1	GL000220.1	+	277	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1141	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4807_CONTIG_1	1	-	382	1	genic_intron	novelGene_410	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_377_CONTIG_1	13	+	1316	1	intergenic	novelGene_288	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_6784_CONTIG_1	5	-	544	1	genic_intron	novelGene_498	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3722_CONTIG_1	MT	-	2597	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8348_CONTIG_1	MT	-	457	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4297_CONTIG_1	MT	-	610	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8508_CONTIG_1	16	+	617	1	incomplete-splice_match	HP	ENST00000565574	1187	5	456	115	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	178	609	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4663_CONTIG_1	12	+	1603	1	antisense	novelGene_A2M_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3784_CONTIG_1	GL000220.1	+	532	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	136	1201	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4152_CONTIG_1	MT	+	782	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	777	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6835_CONTIG_1	19	+	633	1	incomplete-splice_match	FOSB	ENST00000443841	3346	2	2609	105	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_886_CONTIG_1	14	-	1715	1	genic_intron	novelGene_624	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2139_CONTIG_1	14	+	961	1	genic_intron	novelGene_523	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2296_CONTIG_1	17	-	600	1	incomplete-splice_match	TEX2	ENST00000584498	5124	3	2654	1871	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2598_CONTIG_1	8	-	1113	1	genic_intron	novelGene_301	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4405_CONTIG_1	22	-	384	1	genic_intron	novelGene_137	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1459_CONTIG_1	13	+	1102	1	intergenic	novelGene_605	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_310_CONTIG_1	11	-	1820	1	genic_intron	novelGene_419	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_8253_CONTIG_1	20	+	1032	1	genic_intron	novelGene_256	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5581_CONTIG_1	7	-	486	1	genic_intron	novelGene_190	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_833_CONTIG_1	6	+	2126	1	genic_intron	novelGene_795	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8600_CONTIG_1	2	-	1571	1	genic_intron	novelGene_395	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7510_CONTIG_1	5	+	865	1	incomplete-splice_match	MAN2A1	ENST00000503970	5599	2	4441	294	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5182_CONTIG_1	18	+	312	1	novel_in_catalog	MYL12B	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_899_CONTIG_1	20	+	402	1	full-splice_match	RPL41P1	ENST00000546176	306	1	-1	-95	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1174_CONTIG_1	5	+	991	1	full-splice_match	CTC-505O3.2	ENST00000512900	643	1	-253	-95	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8741_CONTIG_1	5	+	1627	1	incomplete-splice_match	F2RL1	ENST00000296677	2914	2	1219	69	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3104_CONTIG_1	16	+	1232	1	genic	RP11-77H9.2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7082_CONTIG_1	MT	+	996	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	260	303	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8318_CONTIG_1	X	-	1018	1	incomplete-splice_match	ZDHHC9	ENST00000357166	4569	11	1894	1658	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3728_CONTIG_1	MT	+	464	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1095	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3516_CONTIG_1	15	-	1562	1	genic_intron	novelGene_667	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7336_CONTIG_1	16	-	338	1	incomplete-splice_match	MBTPS1	ENST00000562906	2923	2	2545	41	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7288_CONTIG_1	9	+	1288	1	genic_intron	novelGene_774	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8390_CONTIG_1	17	+	937	1	full-splice_match	DDX42	ENST00000581767	2244	1	1101	206	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7581_CONTIG_1	3	-	2009	1	genic_intron	novelGene_551	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3317_CONTIG_1	3	+	1326	1	incomplete-splice_match	RPL15	ENST00000436146	1990	3	656	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1344_CONTIG_1	MT	+	505	1	full-splice_match	MT-ATP6	ENST00000361899	681	1	159	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3070_CONTIG_1	17	+	660	1	full-splice_match	RPS7P1	ENST00000393464	647	1	-18	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	194	582	45	626	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6739_CONTIG_1	10	+	1968	1	novel_in_catalog	C10orf11	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7033_CONTIG_1	GL000220.1	+	396	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	209	1264	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_951_CONTIG_1	19	+	1230	1	incomplete-splice_match	ICAM1	ENST00000264832	3252	7	1944	79	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	101	303	875	1177	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4526_CONTIG_1	22	-	293	1	intergenic	novelGene_186	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4921_CONTIG_1	10	+	1114	1	genic_intron	novelGene_170	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4830_CONTIG_1	10	-	686	1	incomplete-splice_match	SLC16A12	ENST00000371790	4617	8	3859	73	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4826_CONTIG_1	MT	+	927	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	211	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4933_CONTIG_1	6	+	312	1	novel_in_catalog	MICC	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8434_CONTIG_1	12	+	928	1	antisense	novelGene_A2M_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2442_CONTIG_1	8	-	1255	1	incomplete-splice_match	KLF10	ENST00000285407	3097	4	1835	8	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1901_CONTIG_1	17	-	922	1	incomplete-splice_match	ARHGDIA	ENST00000269321	1906	6	906	79	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	155	465	415	879	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6477_CONTIG_1	1	-	643	1	genic_intron	novelGene_898	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6374_CONTIG_1	21	-	1681	1	antisense	novelGene_EVA1C_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5969_CONTIG_1	20	+	590	1	incomplete-splice_match	PCK1	ENST00000319441	2686	10	1930	167	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8058_CONTIG_1	2	-	1067	1	incomplete-splice_match	APOB	ENST00000233242	14121	29	12898	157	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7215_CONTIG_1	4	-	841	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2719	119	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3933_CONTIG_1	GL000220.1	+	571	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	4033	466	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3518_CONTIG_1	2	+	398	1	incomplete-splice_match	EML4	ENST00000406175	4622	14	4004	221	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6812_CONTIG_1	1	-	738	1	incomplete-splice_match	TOR1AIP2	ENST00000367612	7905	6	4807	2361	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1772_CONTIG_1	16	+	981	1	genic_intron	novelGene_192	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6847_CONTIG_1	6	-	589	1	genic_intron	novelGene_598	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2089_CONTIG_1	10	-	299	1	incomplete-splice_match	PANK1	ENST00000322191	2513	6	2153	62	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1326_CONTIG_1	MT	+	1557	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4144_CONTIG_1	1	+	1338	1	intergenic	novelGene_917	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4382_CONTIG_1	GL000220.1	+	950	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	587	332	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7805_CONTIG_1	8	-	994	1	novel_in_catalog	SLC20A2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2108_CONTIG_1	GL000220.1	+	297	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1049	523	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2123_CONTIG_1	6	-	1560	1	novel_in_catalog	DDO	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7738_CONTIG_1	5	-	781	1	genic_intron	novelGene_36	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1115_CONTIG_1	4	-	680	1	novel_in_catalog	CXCL2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8625_CONTIG_1	9	-	1827	1	incomplete-splice_match	SURF4	ENST00000371989	2984	6	1116	42	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5564_CONTIG_1	11	-	924	1	genic_intron	novelGene_729	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	98	294	41	334	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4290_CONTIG_1	3	-	690	1	genic_intron	novelGene_746	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_550_CONTIG_1	4	-	1385	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	835	29	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	391	1173	5	1177	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4741_CONTIG_1	8	+	431	1	genic_intron	novelGene_737	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1271_CONTIG_1	3	-	238	1	incomplete-splice_match	CSRNP1	ENST00000514182	2593	5	323	2033	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_511_CONTIG_1	6	+	678	1	genic	PLG	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2104_CONTIG_1	9	-	1972	1	genic_intron	novelGene_520	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2716_CONTIG_1	15	-	1324	1	genic_intron	novelGene_471	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8559_CONTIG_1	MT	-	1369	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_127_CONTIG_1	8	+	1154	1	genic_intron	novelGene_126	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5497_CONTIG_1	3	+	413	1	genic_intron	novelGene_824	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4991_CONTIG_1	13	-	1392	1	antisense	novelGene_GPC6_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3209_CONTIG_1	16	-	652	1	genic_intron	novelGene_509	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6930_CONTIG_1	8	-	1026	1	novel_in_catalog	PSD3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_137_CONTIG_1	15	-	1068	1	incomplete-splice_match	IMP3	ENST00000314852	2028	2	889	72	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	184	552	57	608	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3195_CONTIG_1	MT	-	1028	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5742_CONTIG_1	10	+	1070	1	novel_in_catalog	CCSER2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1411_CONTIG_1	17	-	1766	1	incomplete-splice_match	SOCS3	ENST00000330871	2729	2	924	40	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	coding	118	354	698	1051	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5311_CONTIG_1	8	+	394	1	incomplete-splice_match	INTS10	ENST00000520670	623	3	207	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7123_CONTIG_1	7	-	1648	1	genic_intron	novelGene_350	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_414_CONTIG_1	15	-	498	1	genic_intron	novelGene_326	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2421_CONTIG_1	MT	-	311	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4007_CONTIG_1	10	-	1098	1	genic_intron	novelGene_722	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1405_CONTIG_1	MT	-	1138	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3967_CONTIG_1	11	+	668	1	full-splice_match	MALAT1	ENST00000544868	4585	1	1	3916	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1630_CONTIG_1	13	-	1443	1	incomplete-splice_match	SLC46A3	ENST00000475385	2133	2	651	40	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1724_CONTIG_1	15	+	817	1	incomplete-splice_match	AEN	ENST00000332810	3117	4	2268	33	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5828_CONTIG_1	4	-	1105	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1065	79	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	498	947	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7854_CONTIG_1	10	-	1757	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	903	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3445_CONTIG_1	20	+	1632	1	novel_in_catalog	LBP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3391_CONTIG_1	20	+	1098	1	genic_intron	novelGene_431	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7294_CONTIG_1	13	-	1971	1	genic	PCCA-AS1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6840_CONTIG_1	13	-	285	1	full-splice_match	GJB2	ENST00000382844	2309	1	1034	990	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5164_CONTIG_1	11	+	748	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3837	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7462_CONTIG_1	21	-	818	1	genic_intron	novelGene_234	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_3169_CONTIG_1	GL000220.1	+	577	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	844	448	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_54_CONTIG_1	2	-	1318	1	genic_intron	novelGene_334	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_225_CONTIG_1	12	+	1987	1	antisense	novelGene_IGF1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6508_CONTIG_1	10	-	852	1	genic_intron	novelGene_664	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6731_CONTIG_1	7	-	311	1	antisense	novelGene_ACTR3B_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1284_CONTIG_1	11	+	2245	1	genic_intron	novelGene_217	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5725_CONTIG_1	9	-	578	1	incomplete-splice_match	TMEM2	ENST00000377057	2637	5	1878	182	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8155_CONTIG_1	Y	-	1563	1	genic_intron	novelGene_13	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6063_CONTIG_1	6	-	1943	1	genic_intron	novelGene_269	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1252_CONTIG_1	15	+	1425	1	incomplete-splice_match	FURIN	ENST00000268171	4244	16	2818	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4268_CONTIG_1	5	-	561	1	genic_intron	novelGene_788	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1981_CONTIG_1	MT	+	1648	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-289	19	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_473_CONTIG_1	7	-	766	1	genic_intron	novelGene_842	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_61_CONTIG_1	MT	+	1552	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7629_CONTIG_1	8	-	1724	1	genic_intron	novelGene_769	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3388_CONTIG_1	1	-	1679	1	full-splice_match	JUN	ENST00000371222	3321	1	453	1189	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	327	981	603	1583	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2671_CONTIG_1	8	+	1814	1	genic	TNFRSF10C	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5031_CONTIG_1	MT	-	1011	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_237_CONTIG_1	5	-	547	1	genic_intron	novelGene_559	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8553_CONTIG_1	10	-	1065	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1543	54	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1800_CONTIG_1	11	+	989	1	novel_in_catalog	ARHGEF12	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_189_CONTIG_1	7	+	498	1	incomplete-splice_match	ZKSCAN1	ENST00000324306	9418	6	4707	4214	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3972_CONTIG_1	12	-	384	1	genic_intron	novelGene_477	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4226_CONTIG_1	10	-	757	1	genic_intron	novelGene_633	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6765_CONTIG_1	2	+	991	1	genic_intron	novelGene_882	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1601_CONTIG_1	MT	+	1159	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	373	27	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6377_CONTIG_1	6	-	602	1	genic_intron	novelGene_776	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5018_CONTIG_1	1	+	1840	1	genic_intron	novelGene_600	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3493_CONTIG_1	GL000220.1	+	327	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	281	1261	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5415_CONTIG_1	18	-	875	1	genic_intron	novelGene_401	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7002_CONTIG_1	1	-	1938	1	full-splice_match	PIGM	ENST00000368090	4322	1	130	2254	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	245	735	659	1393	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6602_CONTIG_1	19	+	708	1	incomplete-splice_match	APOE	ENST00000252486	1208	4	495	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	175	525	43	567	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6445_CONTIG_1	5	+	1493	1	incomplete-splice_match	THG1L	ENST00000231198	3107	6	1014	601	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4245_CONTIG_1	2	+	703	1	full-splice_match	RHOB	ENST00000272233	2366	1	1460	203	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5589_CONTIG_1	16	-	486	1	genic_intron	novelGene_139	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1769_CONTIG_1	11	+	1479	1	genic_intron	novelGene_20	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2896_CONTIG_1	13	+	612	1	incomplete-splice_match	MBNL2	ENST00000397601	4487	7	3275	601	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2941_CONTIG_1	4	-	1196	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1019	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	544	993	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_286_CONTIG_1	22	-	1818	1	incomplete-splice_match	PITPNB	ENST00000320996	2826	11	1005	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1438_CONTIG_1	MT	-	1569	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_724_CONTIG_1	MT	+	1554	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_312_CONTIG_1	1	+	999	1	genic_intron	novelGene_225	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8620_CONTIG_1	6	-	1320	1	genic_intron	novelGene_758	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4210_CONTIG_1	MT	+	1187	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	806	-434	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3486_CONTIG_1	5	-	1799	1	genic_intron	novelGene_575	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6976_CONTIG_1	1	-	547	1	full-splice_match	HIST2H2AA3	ENST00000369161	974	1	161	266	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	130	390	53	442	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7026_CONTIG_1	7	-	1144	1	genic_intron	novelGene_753	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_493_CONTIG_1	3	-	637	1	incomplete-splice_match	CLDN1	ENST00000295522	3481	4	2590	255	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7596_CONTIG_1	17	+	1357	1	intergenic	novelGene_259	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2413_CONTIG_1	3	+	406	1	genic_intron	novelGene_644	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_665_CONTIG_1	11	+	264	1	full-splice_match	MALAT1	ENST00000544868	4585	1	1	4320	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6759_CONTIG_1	11	-	558	1	incomplete-splice_match	AHNAK	ENST00000378024	18787	5	17708	522	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_285_CONTIG_1	16	-	1768	1	genic	RP11-883G14.4	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5194_CONTIG_1	X	+	1651	1	genic_intron	novelGene_532	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1228_CONTIG_1	9	-	605	1	genic_intron	novelGene_691	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_645_CONTIG_1	15	+	843	1	novel_in_catalog	EIF2AK4	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1864_CONTIG_1	2	-	660	1	incomplete-splice_match	TFPI	ENST00000392365	3649	8	2981	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_958_CONTIG_1	X	+	1995	1	genic_intron	novelGene_31	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3865_CONTIG_1	16	+	1680	1	full-splice_match	FAHD1	ENST00000427358	1684	1	-5	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	134	402	282	683	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7926_CONTIG_1	1	-	1001	1	incomplete-splice_match	CYP4A11	ENST00000475477	2138	9	1137	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2394_CONTIG_1	12	-	1126	1	incomplete-splice_match	SLC38A4	ENST00000447411	3789	16	2589	75	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3998_CONTIG_1	7	+	1849	1	genic_intron	novelGene_193	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_5150_CONTIG_1	MT	-	1666	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7477_CONTIG_1	MT	+	1395	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	149	15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1142_CONTIG_1	16	-	1296	1	incomplete-splice_match	IGFALS	ENST00000215539	2116	2	792	29	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	239	717	419	1135	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_28_CONTIG_1	10	-	624	1	genic_intron	novelGene_109	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7756_CONTIG_1	4	+	1193	1	intergenic	novelGene_613	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4278_CONTIG_1	16	-	878	1	antisense	novelGene_MT2A_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_674_CONTIG_1	17	-	221	1	full-splice_match	H3F3B	ENST00000586518	1701	1	1120	360	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5991_CONTIG_1	MT	+	1560	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4514_CONTIG_1	MT	+	1560	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2252_CONTIG_1	10	-	1843	1	genic_intron	novelGene_784	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4407_CONTIG_1	2	+	986	1	incomplete-splice_match	TCF7L1	ENST00000282111	2968	12	1978	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2478_CONTIG_1	4	-	1156	1	incomplete-splice_match	ADH1B	ENST00000394887	4059	9	1314	1590	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6611_CONTIG_1	3	+	1757	1	incomplete-splice_match	MYD88	ENST00000421516	2687	5	922	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	80	240	149	388	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8743_CONTIG_1	4	-	304	1	incomplete-splice_match	SMIM14	ENST00000295958	6483	5	4422	1758	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3766_CONTIG_1	13	+	1191	1	antisense	novelGene_RAD17P2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8040_CONTIG_1	3	-	1338	1	incomplete-splice_match	SLC2A2	ENST00000314251	3210	11	1792	81	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2692_CONTIG_1	10	+	1150	1	genic_intron	novelGene_631	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_3356_CONTIG_1	7	-	1171	1	intergenic	novelGene_636	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3887_CONTIG_1	5	-	1514	1	genic_intron	novelGene_306	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2047_CONTIG_1	1	-	675	1	genic_intron	novelGene_856	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2258_CONTIG_1	5	-	650	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	1522	72	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4906_CONTIG_1	4	-	914	1	incomplete-splice_match	G3BP2	ENST00000357854	2609	11	1644	52	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4383_CONTIG_1	3	+	1468	1	genic_intron	novelGene_463	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6815_CONTIG_1	11	+	768	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3817	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7461_CONTIG_1	10	+	1180	1	genic_intron	novelGene_707	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2153_CONTIG_1	10	+	1460	1	genic_intron	novelGene_158	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_7402_CONTIG_1	1	-	604	1	genic_intron	novelGene_891	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7021_CONTIG_1	MT	-	889	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4931_CONTIG_1	1	+	1379	1	genic_intron	novelGene_845	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7251_CONTIG_1	16	+	2208	1	incomplete-splice_match	CDH1	ENST00000261769	4889	16	2670	12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3596_CONTIG_1	16	-	1795	1	intergenic	novelGene_370	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	coding	136	408	305	712	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8007_CONTIG_1	14	+	1303	1	genic_intron	novelGene_426	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1028_CONTIG_1	16	-	1241	1	genic_intron	novelGene_94	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2084_CONTIG_1	6	+	805	1	genic_intron	novelGene_576	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_834_CONTIG_1	6	-	1889	1	novel_in_catalog	SYNCRIP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8586_CONTIG_1	15	-	631	1	genic_intron	novelGene_318	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_982_CONTIG_1	11	-	882	1	genic_intron	novelGene_123	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_5305_CONTIG_1	GL000220.1	+	313	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	182	1374	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7135_CONTIG_1	14	+	1119	1	genic_intron	novelGene_141	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8611_CONTIG_1	MT	-	1155	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_786_CONTIG_1	2	-	736	1	genic_intron	novelGene_756	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3506_CONTIG_1	14	-	1508	1	genic_intron	novelGene_142	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7965_CONTIG_1	GL000220.1	+	444	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	73	1352	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_271_CONTIG_1	2	+	1919	1	genic	CIAO1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1737_CONTIG_1	MT	+	1564	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1985_CONTIG_1	8	+	1329	1	genic_intron	novelGene_120	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6290_CONTIG_1	11	-	1136	1	genic_intron	novelGene_493	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3539_CONTIG_1	7	-	332	1	incomplete-splice_match	AZGP1	ENST00000483612	679	2	303	45	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2343_CONTIG_1	17	-	1175	1	incomplete-splice_match	RASD1	ENST00000225688	1746	2	504	68	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	95	285	268	552	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2603_CONTIG_1	19	-	1344	1	novel_in_catalog	UQCR11	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7729_CONTIG_1	11	-	492	1	genic_intron	novelGene_423	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2931_CONTIG_1	10	-	400	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	2133	129	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1505_CONTIG_1	11	+	389	1	full-splice_match	NEAT1	ENST00000601801	1457	1	1065	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_846_CONTIG_1	4	-	463	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1685	101	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	109	327	1	327	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_210_CONTIG_1	22	+	1339	1	genic	PEX26	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3767_CONTIG_1	MT	+	1506	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	53	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5351_CONTIG_1	4	+	416	1	intergenic	novelGene_844	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1942_CONTIG_1	19	+	533	1	incomplete-splice_match	GADD45B	ENST00000215631	1373	4	836	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2046_CONTIG_1	18	-	2555	1	genic_intron	novelGene_162	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7312_CONTIG_1	19	+	740	1	full-splice_match	GLTSCR1	ENST00000602258	3312	1	2413	159	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1108_CONTIG_1	2	+	999	1	incomplete-splice_match	BOK	ENST00000318407	2650	5	1644	8	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4109_CONTIG_1	MT	+	650	1	full-splice_match	MT-ND2	ENST00000361453	1042	1	360	32	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3805_CONTIG_1	MT	+	1549	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3733_CONTIG_1	9	-	350	1	genic_intron	novelGene_755	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1524_CONTIG_1	6	-	293	1	genic_intron	novelGene_776	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8407_CONTIG_1	10	-	1198	1	incomplete-splice_match	ITPRIP	ENST00000358187	3981	2	2729	55	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3981_CONTIG_1	21	-	1504	1	incomplete-splice_match	ZBTB21	ENST00000398505	6846	4	5259	84	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3285_CONTIG_1	20	+	1612	1	novel_in_catalog	LBP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5975_CONTIG_1	MT	+	1145	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	415	-1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_194_CONTIG_1	GL000220.1	+	235	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1130	504	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5240_CONTIG_1	12	+	1101	1	novel_in_catalog	MGST1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3035_CONTIG_1	17	-	433	1	genic_intron	novelGene_127	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6156_CONTIG_1	16	+	848	1	genic_intron	novelGene_28	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7165_CONTIG_1	3	-	1251	1	genic_intron	novelGene_754	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6041_CONTIG_1	15	-	734	1	intergenic	novelGene_382	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6058_CONTIG_1	MT	+	950	1	full-splice_match	MT-ND1	ENST00000361390	956	1	-2	8	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1517_CONTIG_1	4	-	1134	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1088	27	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	475	924	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1566_CONTIG_1	1	+	1356	1	genic_intron	novelGene_407	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_413_CONTIG_1	MT	+	1643	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-289	24	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_703_CONTIG_1	2	+	1103	1	genic_intron	novelGene_764	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1957_CONTIG_1	MT	-	1083	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6822_CONTIG_1	MT	+	1467	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	92	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2672_CONTIG_1	12	-	1685	1	incomplete-splice_match	MED13L	ENST00000281928	9530	31	7081	765	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6741_CONTIG_1	2	-	1363	1	novel_in_catalog	STK39	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_192_CONTIG_1	12	-	1259	1	genic_intron	novelGene_64	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4841_CONTIG_1	19	-	887	1	genic_intron	novelGene_403	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2167_CONTIG_1	5	+	798	1	full-splice_match	CTC-505O3.2	ENST00000512900	643	1	-270	115	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5428_CONTIG_1	5	-	1547	1	genic_intron	novelGene_860	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3783_CONTIG_1	12	-	1609	1	novel_in_catalog	EIF2B1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_216_CONTIG_1	16	+	354	1	incomplete-splice_match	HP	ENST00000562526	685	5	327	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5189_CONTIG_1	MT	+	324	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	38	1197	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3443_CONTIG_1	5	-	1281	1	incomplete-splice_match	NR3C1	ENST00000415690	3789	9	2461	48	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4704_CONTIG_1	6	+	651	1	novel_in_catalog	TRIM15	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5456_CONTIG_1	5	+	994	1	novel_in_catalog	NDST1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_999_CONTIG_1	MT	+	926	1	full-splice_match	MT-CO1	ENST00000361624	1542	1	687	-71	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7597_CONTIG_1	7	-	950	1	genic	AASS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_300_CONTIG_1	17	+	331	1	incomplete-splice_match	ALKBH5	ENST00000490106	2146	2	1317	499	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7950_CONTIG_1	16	-	1050	1	intergenic	novelGene_183	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7226_CONTIG_1	6	+	1225	1	genic_intron	novelGene_98	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4264_CONTIG_1	6	-	1461	1	genic_intron	novelGene_387	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5265_CONTIG_1	18	-	736	1	genic_intron	novelGene_75	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6526_CONTIG_1	1	+	623	1	genic	RP11-253A20.1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5643_CONTIG_1	MT	+	951	1	full-splice_match	MT-ND1	ENST00000361390	956	1	-2	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4503_CONTIG_1	2	+	1307	1	incomplete-splice_match	MAT2A	ENST00000306434	2819	9	1468	45	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2697_CONTIG_1	13	+	2012	1	genic_intron	novelGene_661	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3029_CONTIG_1	MT	+	609	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	920	30	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5098_CONTIG_1	9	-	1287	1	genic_intron	novelGene_660	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7268_CONTIG_1	4	+	2056	1	antisense	novelGene_PPP3CA_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2643_CONTIG_1	MT	+	709	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_754_CONTIG_1	8	-	1454	1	genic_intron	novelGene_645	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4508_CONTIG_1	3	-	821	1	genic_intron	novelGene_515	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2269_CONTIG_1	5	-	370	1	incomplete-splice_match	GOLPH3	ENST00000265070	2721	4	2275	77	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4575_CONTIG_1	9	+	923	1	incomplete-splice_match	FUBP3	ENST00000319725	3124	19	2175	27	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3921_CONTIG_1	MT	+	368	1	full-splice_match	MT-CO1	ENST00000361624	1542	1	714	460	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3807_CONTIG_1	15	-	666	1	genic_intron	novelGene_421	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5025_CONTIG_1	MT	+	845	1	full-splice_match	MT-RNR1	ENST00000389680	954	1	103	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8304_CONTIG_1	2	+	843	1	incomplete-splice_match	SEPT2	ENST00000407971	3267	12	1812	613	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5354_CONTIG_1	14	+	620	1	novel_in_catalog	TTLL5	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2731_CONTIG_1	11	+	936	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3649	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6577_CONTIG_1	MT	-	1619	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_425_CONTIG_1	X	+	857	1	novel_in_catalog	TIMP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8749_CONTIG_1	11	+	1124	1	genic_intron	novelGene_513	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1473_CONTIG_1	11	+	564	1	antisense	novelGene_SAA4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3128_CONTIG_1	MT	-	238	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4717_CONTIG_1	12	-	1684	1	genic	IGF1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6955_CONTIG_1	12	+	1002	1	incomplete-splice_match	ATP2A2	ENST00000313432	5575	2	3568	1006	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	112	336	220	555	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4798_CONTIG_1	19	+	429	1	incomplete-splice_match	APOE	ENST00000252486	1208	4	679	101	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	82	246	138	383	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4667_CONTIG_1	MT	-	344	1	antisense	novelGene_MT-CO3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2506_CONTIG_1	2	-	1799	1	genic_intron	novelGene_44	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1127_CONTIG_1	12	+	892	1	genic_intron	novelGene_187	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5758_CONTIG_1	11	-	2024	1	intergenic	novelGene_352	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2237_CONTIG_1	MT	+	1138	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	96	325	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_492_CONTIG_1	18	-	1241	1	genic_intron	novelGene_3	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2812_CONTIG_1	16	-	1140	1	genic_intron	novelGene_169	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_488_CONTIG_1	15	+	755	1	antisense	novelGene_GATM_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6899_CONTIG_1	15	-	837	1	genic_intron	novelGene_420	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6205_CONTIG_1	MT	-	1099	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6540_CONTIG_1	1	+	1744	1	genic_intron	novelGene_848	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5949_CONTIG_1	4	+	506	1	incomplete-splice_match	FNIP2	ENST00000264433	6925	17	5830	590	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5347_CONTIG_1	MT	+	622	1	full-splice_match	MT-CO1	ENST00000361624	1542	1	464	456	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5501_CONTIG_1	3	+	1122	1	incomplete-splice_match	HRG	ENST00000232003	2015	7	856	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	143	429	108	536	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3536_CONTIG_1	GL000220.1	+	445	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	977	447	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2949_CONTIG_1	11	-	1882	1	genic_intron	novelGene_492	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1059_CONTIG_1	14	-	1722	1	incomplete-splice_match	ELMSAN1	ENST00000476562	5314	7	1992	1601	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5794_CONTIG_1	3	-	1635	1	genic_intron	novelGene_876	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4319_CONTIG_1	16	-	2554	1	antisense	novelGene_DPPA2P4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	4	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7757_CONTIG_1	12	-	1511	1	genic_intron	novelGene_689	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_1739_CONTIG_1	17	+	892	1	novel_in_catalog	AATF	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4036_CONTIG_1	4	-	622	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2839	218	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3396_CONTIG_1	19	+	757	1	incomplete-splice_match	ILF3	ENST00000586544	3859	3	3017	86	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6568_CONTIG_1	MT	+	1124	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4762_CONTIG_1	4	-	1143	1	incomplete-splice_match	ADH1B	ENST00000394887	4059	9	1389	1528	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2928_CONTIG_1	16	-	1167	1	incomplete-splice_match	IGFALS	ENST00000215539	2116	2	947	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	239	717	264	980	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8345_CONTIG_1	3	-	726	1	genic_intron	novelGene_584	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1603_CONTIG_1	12	+	1204	1	genic_intron	novelGene_172	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5798_CONTIG_1	3	+	631	1	incomplete-splice_match	KNG1	ENST00000265023	3435	10	1883	922	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3093_CONTIG_1	7	-	763	1	incomplete-splice_match	NAMPT	ENST00000222553	4582	11	2706	1114	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4897_CONTIG_1	MT	+	1564	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7136_CONTIG_1	17	-	556	1	incomplete-splice_match	PER1	ENST00000581082	4521	22	3669	297	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6891_CONTIG_1	14	-	694	1	genic_intron	novelGene_218	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_358_CONTIG_1	14	-	701	1	genic_intron	novelGene_221	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2127_CONTIG_1	2	+	323	1	novel_in_catalog	FOSL2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2135_CONTIG_1	8	-	610	1	genic_intron	novelGene_583	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7282_CONTIG_1	1	+	1524	1	novel_in_catalog	SNAP47	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_805_CONTIG_1	4	-	1251	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	971	27	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	592	1041	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3318_CONTIG_1	12	-	398	1	full-splice_match	UBC	ENST00000536769	3745	1	3198	149	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	65	195	204	398	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6451_CONTIG_1	1	-	1585	1	incomplete-splice_match	ERRFI1	ENST00000377482	3104	4	576	944	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8199_CONTIG_1	7	+	989	1	incomplete-splice_match	SERPINE1	ENST00000445463	3135	10	2017	130	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4343_CONTIG_1	7	+	1616	1	incomplete-splice_match	INSIG1	ENST00000344756	2623	6	884	124	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1632_CONTIG_1	14	+	848	1	genic_intron	novelGene_506	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1286_CONTIG_1	17	+	1211	1	incomplete-splice_match	NGFR	ENST00000172229	3417	6	2197	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1172_CONTIG_1	7	+	852	1	antisense	novelGene_AC007000.12_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8650_CONTIG_1	5	-	1331	1	antisense	novelGene_LEAP2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7979_CONTIG_1	1	-	1533	1	antisense	novelGene_RNPEP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1865_CONTIG_1	11	+	2081	1	antisense	novelGene_SAA2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_69_CONTIG_1	4	-	981	1	genic_intron	novelGene_696	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2386_CONTIG_1	16	+	327	1	incomplete-splice_match	NAA60	ENST00000575785	2238	10	1553	359	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8020_CONTIG_1	21	+	1973	1	genic_intron	novelGene_254	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6252_CONTIG_1	1	-	1736	1	genic_intron	novelGene_307	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1457_CONTIG_1	15	-	915	1	incomplete-splice_match	BNIP2	ENST00000478981	1415	4	423	78	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8691_CONTIG_1	16	-	1189	1	genic_intron	novelGene_194	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_47_CONTIG_1	11	+	347	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	4238	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2789_CONTIG_1	17	-	578	1	incomplete-splice_match	PIP4K2B	ENST00000269554	5734	10	4281	876	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1224_CONTIG_1	3	-	1531	1	incomplete-splice_match	CPN2	ENST00000323830	3028	2	1441	57	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3461_CONTIG_1	5	+	1000	1	genic_intron	novelGene_61	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4057_CONTIG_1	10	-	1868	1	genic_intron	novelGene_732	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	223	669	846	1514	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_653_CONTIG_1	20	+	1424	1	genic_intron	novelGene_171	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	122	366	604	969	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5058_CONTIG_1	MT	+	762	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	799	-2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3276_CONTIG_1	1	-	260	1	novel_in_catalog	ECHDC2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1649_CONTIG_1	7	-	1449	1	genic_intron	novelGene_461	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2187_CONTIG_1	13	-	2132	1	intergenic	novelGene_604	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_273_CONTIG_1	10	+	816	1	genic_intron	novelGene_555	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4402_CONTIG_1	9	-	878	1	genic_intron	novelGene_25	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4029_CONTIG_1	6	+	2120	1	incomplete-splice_match	SMLR1	ENST00000541421	2512	2	357	36	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3890_CONTIG_1	3	-	1099	1	genic_intron	novelGene_230	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3259_CONTIG_1	11	-	1359	1	genic_intron	novelGene_122	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3273_CONTIG_1	1	+	568	1	genic_intron	novelGene_807	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5974_CONTIG_1	17	-	1123	1	genic_intron	novelGene_320	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2376_CONTIG_1	8	+	569	1	genic_intron	novelGene_734	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6128_CONTIG_1	8	-	540	1	antisense	novelGene_XPO7_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4026_CONTIG_1	MT	+	1240	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	319	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8189_CONTIG_1	MT	-	1661	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6692_CONTIG_1	6	+	1411	1	genic_intron	novelGene_850	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5843_CONTIG_1	11	+	652	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3933	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7614_CONTIG_1	17	+	369	1	genic_intron	novelGene_177	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1976_CONTIG_1	X	-	501	1	genic_intron	novelGene_759	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_84_CONTIG_1	19	+	661	1	incomplete-splice_match	ATF5	ENST00000423777	2069	3	801	608	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	coding	106	318	105	422	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6478_CONTIG_1	21	+	339	1	genic_intron	novelGene_203	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6855_CONTIG_1	20	+	368	1	genic_intron	novelGene_357	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6013_CONTIG_1	MT	+	1547	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4275_CONTIG_1	1	+	532	1	genic_intron	novelGene_833	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2873_CONTIG_1	2	+	2111	1	novel_in_catalog	CNOT11	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6882_CONTIG_1	11	-	1984	1	novel_in_catalog	SAA2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_276_CONTIG_1	13	-	1254	1	genic_intron	novelGene_617	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2094_CONTIG_1	3	-	442	1	genic_intron	novelGene_786	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2037_CONTIG_1	12	+	933	1	genic_intron	novelGene_682	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2467_CONTIG_1	12	-	314	1	full-splice_match	UBC	ENST00000536769	3745	1	3271	160	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	61	183	131	313	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7577_CONTIG_1	4	+	1879	1	genic_intron	novelGene_816	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	95	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_2261_CONTIG_1	9	+	2233	1	genic_intron	novelGene_270	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1680_CONTIG_1	16	-	913	1	genic_intron	novelGene_359	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5924_CONTIG_1	20	-	874	1	antisense	novelGene_RP5-827A12.2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6634_CONTIG_1	MT	+	1017	1	full-splice_match	MT-ND2	ENST00000361453	1042	1	11	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8268_CONTIG_1	5	-	453	1	incomplete-splice_match	LPCAT1	ENST00000503252	2694	3	2204	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1210_CONTIG_1	MT	+	568	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	991	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7344_CONTIG_1	7	+	1942	1	genic_intron	novelGene_325	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6190_CONTIG_1	6	-	384	1	genic_intron	novelGene_773	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7208_CONTIG_1	MT	+	1436	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	123	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4293_CONTIG_1	MT	-	963	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7210_CONTIG_1	9	-	1760	1	genic_intron	novelGene_29	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_449_CONTIG_1	X	+	589	1	incomplete-splice_match	AR	ENST00000374690	10065	8	8360	1117	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3603_CONTIG_1	GL000220.1	+	412	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	0	4658	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8262_CONTIG_1	8	+	433	1	genic_intron	novelGene_56	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1378_CONTIG_1	GL000220.1	+	326	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1092	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4774_CONTIG_1	19	-	302	1	genic_intron	novelGene_23	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1778_CONTIG_1	12	-	977	1	incomplete-splice_match	TUBA1B	ENST00000336023	1627	4	524	127	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	298	894	32	925	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1888_CONTIG_1	19	+	1841	1	incomplete-splice_match	CYP4F3	ENST00000221307	5050	13	1590	1620	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1244_CONTIG_1	5	+	1700	1	incomplete-splice_match	ABLIM3	ENST00000326685	4164	21	2326	139	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_410_CONTIG_1	1	+	1412	1	incomplete-splice_match	KMO	ENST00000366557	4888	14	3391	86	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5502_CONTIG_1	11	+	1429	1	incomplete-splice_match	C11orf54	ENST00000331239	2522	9	1080	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6075_CONTIG_1	17	+	1060	1	incomplete-splice_match	TMEM97	ENST00000336687	2115	4	1052	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7411_CONTIG_1	5	+	819	1	antisense	novelGene_MRPS27_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5537_CONTIG_1	5	+	1496	1	genic_intron	novelGene_629	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6958_CONTIG_1	MT	+	1551	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	8	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7398_CONTIG_1	GL000220.1	+	396	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	869	604	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8495_CONTIG_1	3	+	1259	1	genic_intron	novelGene_544	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8397_CONTIG_1	6	-	790	1	genic_intron	novelGene_402	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2748_CONTIG_1	13	+	837	1	genic_intron	novelGene_646	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6901_CONTIG_1	22	+	1194	1	antisense	novelGene_DDX17_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5555_CONTIG_1	2	-	1619	1	incomplete-splice_match	APOB	ENST00000233242	14121	29	12286	217	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3680_CONTIG_1	MT	+	1170	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	205	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8044_CONTIG_1	MT	-	809	1	antisense	novelGene_MT-ATP6_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5395_CONTIG_1	7	-	2359	1	genic_intron	novelGene_595	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4477_CONTIG_1	6	+	312	1	antisense	novelGene_CMAHP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7339_CONTIG_1	15	-	976	1	genic_intron	novelGene_314	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7240_CONTIG_1	15	+	1165	1	incomplete-splice_match	IVD	ENST00000479013	4251	11	3044	43	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4194_CONTIG_1	1	-	1175	1	incomplete-splice_match	ALDH4A1	ENST00000538839	2957	14	1688	95	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_461_CONTIG_1	11	-	693	1	incomplete-splice_match	LRRC32	ENST00000260061	4207	3	3280	235	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	57	171	177	347	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4325_CONTIG_1	11	-	1803	1	genic_intron	novelGene_721	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6089_CONTIG_1	6	+	292	1	genic_intron	novelGene_449	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7685_CONTIG_1	14	+	1540	1	antisense	novelGene_SERPINA1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	133	399	834	1232	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4721_CONTIG_1	12	-	367	1	incomplete-splice_match	IGF1	ENST00000337514	7359	4	2696	4297	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1479_CONTIG_1	2	-	1073	1	novel_in_catalog	PELI1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7947_CONTIG_1	MT	+	1558	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5729_CONTIG_1	12	-	772	1	incomplete-splice_match	SLC41A2	ENST00000258538	4449	10	1838	1840	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1581_CONTIG_1	MT	+	300	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1259	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_357_CONTIG_1	MT	-	1596	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7505_CONTIG_1	2	+	1548	1	genic_intron	novelGene_656	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8186_CONTIG_1	10	-	2034	1	genic_intron	novelGene_628	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6342_CONTIG_1	1	-	1330	1	novel_in_catalog	DPH5	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2425_CONTIG_1	6	+	1532	1	full-splice_match	AL009178.1	ENST00000597278	2718	1	1133	53	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8500_CONTIG_1	1	+	338	1	incomplete-splice_match	LMNA	ENST00000470199	551	3	0	214	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	43	129	209	337	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2401_CONTIG_1	3	-	778	1	full-splice_match	CGGBP1	ENST00000398392	5298	1	2880	1640	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6600_CONTIG_1	3	+	817	1	genic_intron	novelGene_740	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2071_CONTIG_1	MT	-	1026	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1753_CONTIG_1	MT	-	682	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8661_CONTIG_1	7	-	481	1	novel_in_catalog	PON2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7679_CONTIG_1	19	+	474	1	incomplete-splice_match	APOE	ENST00000252486	1208	4	438	297	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	142	426	49	474	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5844_CONTIG_1	9	-	1438	1	incomplete-splice_match	BAAT	ENST00000259407	3377	4	1929	11	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2317_CONTIG_1	X	+	279	1	genic_intron	novelGene_316	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5371_CONTIG_1	1	+	1576	1	incomplete-splice_match	RHOU	ENST00000366691	4372	3	2763	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4777_CONTIG_1	10	+	991	1	incomplete-splice_match	SLK	ENST00000335753	7673	18	6670	13	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2947_CONTIG_1	3	-	576	1	genic_intron	novelGene_462	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5372_CONTIG_1	2	+	729	1	genic_intron	novelGene_892	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5824_CONTIG_1	14	-	1732	1	incomplete-splice_match	CFL2	ENST00000298159	3129	4	1274	124	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2116_CONTIG_1	6	+	1501	1	full-splice_match	HSPA1A	ENST00000375651	2427	1	909	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	261	783	475	1257	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2219_CONTIG_1	1	-	1148	1	incomplete-splice_match	PEX19	ENST00000472750	3504	7	1013	1344	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7858_CONTIG_1	7	-	592	1	incomplete-splice_match	PARP12	ENST00000488726	2574	10	1976	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7405_CONTIG_1	6	-	1326	1	incomplete-splice_match	ZBTB2	ENST00000325144	3090	3	1737	28	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_880_CONTIG_1	16	+	462	1	genic_intron	novelGene_568	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7694_CONTIG_1	19	-	819	1	antisense	novelGene_NDUFA3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5246_CONTIG_1	MT	-	1386	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3792_CONTIG_1	1	-	1485	1	genic_intron	novelGene_927	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1915_CONTIG_1	1	+	513	1	genic_intron	novelGene_843	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4081_CONTIG_1	6	+	1296	1	incomplete-splice_match	SENP6	ENST00000447266	6501	24	3714	1492	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6429_CONTIG_1	22	-	587	1	incomplete-splice_match	MFNG	ENST00000416983	2034	7	1215	233	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2293_CONTIG_1	GL000220.1	+	371	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	0	4699	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_27_CONTIG_1	17	+	780	1	novel_in_catalog	CDK12	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6312_CONTIG_1	1	-	432	1	genic_intron	novelGene_179	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7195_CONTIG_1	4	-	389	1	genic_intron	novelGene_797	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_347_CONTIG_1	11	-	752	1	genic	AC132217.4	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5210_CONTIG_1	7	-	1572	1	incomplete-splice_match	PDK4	ENST00000005178	3576	11	1967	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6496_CONTIG_1	9	+	1849	1	genic_intron	novelGene_88	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8476_CONTIG_1	7	+	993	1	genic_intron	novelGene_257	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4885_CONTIG_1	15	+	1103	1	incomplete-splice_match	PLEKHO2	ENST00000323544	3720	6	2608	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4655_CONTIG_1	19	+	804	1	intergenic	novelGene_413	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8_CONTIG_1	17	+	442	1	incomplete-splice_match	UBB	ENST00000395839	1012	2	557	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	77	231	79	309	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3847_CONTIG_1	X	-	1200	1	incomplete-splice_match	ZBED1	ENST00000381218	2832	2	1548	85	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	274	822	12	833	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3398_CONTIG_1	9	+	818	1	incomplete-splice_match	HSDL2	ENST00000398803	2983	9	2161	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1094_CONTIG_1	MT	+	1537	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	22	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_431_CONTIG_1	MT	-	561	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5568_CONTIG_1	9	-	911	1	incomplete-splice_match	STOM	ENST00000286713	3010	7	2046	54	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4977_CONTIG_1	3	-	1246	1	genic_intron	novelGene_866	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5125_CONTIG_1	12	-	638	1	antisense	novelGene_C12orf23_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7530_CONTIG_1	3	+	1364	1	antisense	novelGene_GNB4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4864_CONTIG_1	11	+	1425	1	genic_intron	novelGene_249	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6248_CONTIG_1	12	+	1007	1	genic_intron	novelGene_409	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6588_CONTIG_1	5	-	1494	1	genic_intron	novelGene_571	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1842_CONTIG_1	3	-	445	1	full-splice_match	RP11-384L8.1	ENST00000565519	1891	1	1451	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6516_CONTIG_1	7	+	1054	1	genic_intron	novelGene_611	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2028_CONTIG_1	16	+	908	1	full-splice_match	MT2A	ENST00000562017	903	1	-11	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7152_CONTIG_1	10	-	314	1	incomplete-splice_match	CUL2	ENST00000374746	3903	19	2338	1252	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7454_CONTIG_1	5	+	2289	1	genic_intron	novelGene_384	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2822_CONTIG_1	MT	+	254	1	full-splice_match	MT-ND5	ENST00000361567	1812	1	1691	-133	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_134_CONTIG_1	16	+	286	1	incomplete-splice_match	DHODH	ENST00000219240	2065	9	1225	555	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5274_CONTIG_1	16	+	1507	1	genic_intron	novelGene_566	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2879_CONTIG_1	11	-	2078	1	antisense	novelGene_SAA1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7218_CONTIG_1	17	-	1546	1	genic_intron	novelGene_581	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	106	318	353	670	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6184_CONTIG_1	16	+	877	1	incomplete-splice_match	HP	ENST00000398131	1252	5	340	36	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	228	684	62	745	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4672_CONTIG_1	MT	+	1364	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	129	66	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4645_CONTIG_1	3	+	1554	1	full-splice_match	PSMC1P1	ENST00000478110	1320	1	-16	-218	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	294	882	17	898	90	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_841_CONTIG_1	20	-	1616	1	incomplete-splice_match	NSFL1C	ENST00000555944	2588	8	956	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7177_CONTIG_1	MT	+	1584	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-289	83	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7059_CONTIG_1	5	+	1234	1	genic	IPO11	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1902_CONTIG_1	8	+	2116	1	novel_in_catalog	FAM92A1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7838_CONTIG_1	2	+	590	1	genic_intron	novelGene_913	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5541_CONTIG_1	15	-	1800	1	novel_in_catalog	USP3-AS1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4166_CONTIG_1	7	-	305	1	genic_intron	novelGene_766	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5416_CONTIG_1	7	-	716	1	incomplete-splice_match	PUS7	ENST00000356362	3480	16	2616	149	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6838_CONTIG_1	4	-	982	1	genic_intron	novelGene_841	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6716_CONTIG_1	X	-	324	1	intergenic	novelGene_479	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1000_CONTIG_1	22	+	465	1	genic_intron	novelGene_132	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4044_CONTIG_1	12	-	1349	1	genic_intron	novelGene_134	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4476_CONTIG_1	4	+	1020	1	novel_in_catalog	SLC25A4	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3870_CONTIG_1	17	+	680	1	novel_in_catalog	MYO15B	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	142	426	31	456	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3973_CONTIG_1	10	-	999	1	genic_intron	novelGene_748	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_855_CONTIG_1	8	-	320	1	genic_intron	novelGene_541	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1597_CONTIG_1	11	+	1493	1	genic_intron	novelGene_594	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_568_CONTIG_1	3	-	849	1	full-splice_match	RP11-362K14.5	ENST00000602342	3143	1	2745	-451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3609_CONTIG_1	GL000220.1	+	711	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	502	656	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7953_CONTIG_1	21	-	501	1	genic_intron	novelGene_155	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7153_CONTIG_1	15	+	1282	1	novel_in_catalog	B2M	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4414_CONTIG_1	15	-	1231	1	genic_intron	novelGene_397	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6676_CONTIG_1	8	-	1263	1	incomplete-splice_match	KIF13B	ENST00000524189	8745	40	7337	146	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2291_CONTIG_1	12	-	337	1	antisense	novelGene_KIAA1033_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5854_CONTIG_1	2	+	1254	1	incomplete-splice_match	RMND5A	ENST00000283632	6301	9	4786	262	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_604_CONTIG_1	GL000220.1	+	636	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	361	872	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1594_CONTIG_1	10	+	1503	1	incomplete-splice_match	CSGALNACT2	ENST00000374466	3730	8	2134	94	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_389_CONTIG_1	3	-	1524	1	antisense	novelGene_TMEM43_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1689_CONTIG_1	MT	+	1028	1	full-splice_match	MT-ND2	ENST00000361453	1042	1	0	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4143_CONTIG_1	16	+	844	1	incomplete-splice_match	HP	ENST00000398131	1252	5	377	32	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	228	684	25	708	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3043_CONTIG_1	6	+	1577	1	antisense	novelGene_BACH2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5079_CONTIG_1	16	+	423	1	genic_intron	novelGene_67	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_6524_CONTIG_1	11	-	1730	1	genic_intron	novelGene_78	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1030_CONTIG_1	19	-	932	1	incomplete-splice_match	PLIN5	ENST00000381848	2470	8	1347	192	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6257_CONTIG_1	15	+	362	1	genic_intron	novelGene_547	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2477_CONTIG_1	8	+	488	1	genic_intron	novelGene_801	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4512_CONTIG_1	14	-	390	1	genic_intron	novelGene_503	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_340_CONTIG_1	2	-	1346	1	genic_intron	novelGene_101	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5751_CONTIG_1	1	+	1318	1	antisense	novelGene_EDEM3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1750_CONTIG_1	2	-	373	1	incomplete-splice_match	HSPD1	ENST00000345042	2299	12	1916	11	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1602_CONTIG_1	5	-	1708	1	genic_intron	novelGene_820	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_626_CONTIG_1	3	-	1133	1	genic_intron	novelGene_771	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2525_CONTIG_1	MT	+	1514	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	45	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7903_CONTIG_1	MT	+	1536	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_902_CONTIG_1	16	+	1032	1	genic_intron	novelGene_108	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4739_CONTIG_1	3	+	406	1	incomplete-splice_match	NBEAL2	ENST00000292309	8275	52	7864	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5560_CONTIG_1	MT	-	391	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5905_CONTIG_1	14	-	156	1	genic_intron	novelGene_504	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2747_CONTIG_1	MT	+	1561	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7286_CONTIG_1	7	+	806	1	novel_in_catalog	SERPINE1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8340_CONTIG_1	2	-	1051	1	novel_in_catalog	FABP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2375_CONTIG_1	8	-	731	1	genic_intron	novelGene_446	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2531_CONTIG_1	9	-	505	1	novel_in_catalog	C5	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3899_CONTIG_1	MT	+	1559	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_890_CONTIG_1	16	+	730	1	genic_intron	novelGene_152	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5363_CONTIG_1	12	+	478	1	incomplete-splice_match	MGST1	ENST00000010404	901	4	395	29	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4971_CONTIG_1	GL000220.1	+	289	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	281	1299	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3096_CONTIG_1	5	-	836	1	incomplete-splice_match	GOLPH3	ENST00000265070	2721	4	1795	91	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5040_CONTIG_1	MT	-	505	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5420_CONTIG_1	6	-	2309	1	genic_intron	novelGene_609	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5767_CONTIG_1	1	-	541	1	genic_intron	novelGene_906	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2111_CONTIG_1	1	-	2295	1	novel_in_catalog	CRP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	coding	203	609	449	1057	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1979_CONTIG_1	5	-	1489	1	genic_intron	novelGene_229	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6194_CONTIG_1	MT	+	1565	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4364_CONTIG_1	8	-	1026	1	novel_in_catalog	TNFRSF10D	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8438_CONTIG_1	4	+	1225	1	intergenic	novelGene_48	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1502_CONTIG_1	7	-	499	1	genic_intron	novelGene_839	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2739_CONTIG_1	MT	-	1607	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7275_CONTIG_1	10	-	1929	1	novel_in_catalog	MAT1A	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	coding	101	303	1549	1851	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_132_CONTIG_1	9	-	648	1	incomplete-splice_match	RALGDS	ENST00000372047	3598	18	2937	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	115	345	62	406	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6777_CONTIG_1	3	+	1901	1	antisense	novelGene_IQCG_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5348_CONTIG_1	3	-	917	1	genic_intron	novelGene_417	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_7570_CONTIG_1	3	-	775	1	full-splice_match	UBE2FP1	ENST00000416536	447	1	222	-550	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1203_CONTIG_1	19	-	1237	1	genic	LRG1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5772_CONTIG_1	10	+	1457	1	incomplete-splice_match	ACADSB	ENST00000358776	5859	11	4362	41	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4939_CONTIG_1	5	+	305	1	incomplete-splice_match	CANX	ENST00000452673	4207	15	2910	993	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7284_CONTIG_1	18	+	2147	1	genic_intron	novelGene_32	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5707_CONTIG_1	20	-	1896	1	genic_intron	novelGene_211	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2890_CONTIG_1	9	-	825	1	incomplete-splice_match	BAAT	ENST00000259407	3377	4	1920	633	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6348_CONTIG_1	2	-	1753	1	novel_in_catalog	FABP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_157_CONTIG_1	11	-	287	1	genic_intron	novelGene_527	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2224_CONTIG_1	MT	+	861	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	397	301	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4073_CONTIG_1	5	-	1133	1	genic_intron	novelGene_228	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5389_CONTIG_1	5	-	1566	1	incomplete-splice_match	DIAPH1	ENST00000476339	2606	2	1004	37	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2172_CONTIG_1	MT	+	1234	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	280	45	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1992_CONTIG_1	MT	-	699	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3712_CONTIG_1	11	-	915	1	genic_intron	novelGene_122	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7039_CONTIG_1	2	-	2143	1	genic_intron	novelGene_840	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_288_CONTIG_1	11	+	1564	1	full-splice_match	MALAT1	ENST00000544868	4585	1	-835	3856	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6570_CONTIG_1	7	-	1048	1	genic_intron	novelGene_247	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2453_CONTIG_1	3	-	516	1	incomplete-splice_match	CP	ENST00000460674	2269	5	1478	276	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1535_CONTIG_1	19	+	1401	1	genic_intron	novelGene_38	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8028_CONTIG_1	MT	+	1000	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	137	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8227_CONTIG_1	MT	+	1544	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2674_CONTIG_1	17	+	615	1	antisense	novelGene_ASGR1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	150	450	45	494	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_415_CONTIG_1	17	+	1470	1	genic_intron	novelGene_416	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_494_CONTIG_1	7	+	1633	1	antisense	novelGene_HNRNPA2B1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_764_CONTIG_1	MT	+	1534	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2315_CONTIG_1	7	+	439	1	genic_intron	novelGene_524	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5498_CONTIG_1	MT	-	955	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_444_CONTIG_1	MT	+	705	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-21	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5947_CONTIG_1	14	-	1063	1	novel_in_catalog	NUMB	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	coding	108	324	459	782	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_630_CONTIG_1	8	-	812	1	incomplete-splice_match	ST3GAL1	ENST00000522652	2580	10	1752	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1686_CONTIG_1	GL000220.1	+	386	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	0	4684	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5062_CONTIG_1	15	-	1044	1	genic_intron	novelGene_435	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4107_CONTIG_1	MT	-	515	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1685_CONTIG_1	11	+	1418	1	antisense	novelGene_SAA2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7728_CONTIG_1	GL000220.1	+	220	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1196	453	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_182_CONTIG_1	11	+	374	1	genic_intron	novelGene_339	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1157_CONTIG_1	9	+	964	1	genic_intron	novelGene_798	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_369_CONTIG_1	MT	-	1662	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3945_CONTIG_1	6	-	1129	1	incomplete-splice_match	C6orf62	ENST00000378119	4134	5	2941	65	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3912_CONTIG_1	1	+	1401	1	novel_in_catalog	PRRC2C	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5407_CONTIG_1	12	+	632	1	incomplete-splice_match	METTL7A	ENST00000332160	3390	2	1946	813	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7147_CONTIG_1	1	-	913	1	genic_intron	novelGene_104	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_818_CONTIG_1	6	+	853	1	genic_intron	novelGene_775	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4498_CONTIG_1	MT	+	1032	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	121	225	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6913_CONTIG_1	5	-	1089	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	1143	12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6715_CONTIG_1	3	+	1894	1	genic_intron	novelGene_430	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6486_CONTIG_1	1	-	1128	1	incomplete-splice_match	PPAP2B	ENST00000371250	3292	6	1793	372	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_937_CONTIG_1	8	+	941	1	incomplete-splice_match	SLC39A14	ENST00000359741	4641	9	3695	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7065_CONTIG_1	5	+	935	1	incomplete-splice_match	GPX3	ENST00000388825	1636	5	700	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8182_CONTIG_1	1	+	840	1	genic_intron	novelGene_657	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3061_CONTIG_1	MT	-	1557	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_281_CONTIG_1	17	-	1232	1	incomplete-splice_match	CDC42EP4	ENST00000439510	2879	3	1589	59	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2934_CONTIG_1	10	+	1522	1	antisense	novelGene_ANK3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2422_CONTIG_1	10	-	1222	1	incomplete-splice_match	KLF6	ENST00000542957	4537	3	2724	592	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_618_CONTIG_1	15	+	1393	1	genic_intron	novelGene_587	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3954_CONTIG_1	8	+	804	1	incomplete-splice_match	LETM2	ENST00000519476	2240	3	1183	254	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3055_CONTIG_1	12	+	774	1	full-splice_match	HBCBP	ENST00000600202	591	1	-700	517	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2780_CONTIG_1	17	-	573	1	genic_intron	novelGene_117	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4244_CONTIG_1	16	+	569	1	incomplete-splice_match	HP	ENST00000398131	1252	5	681	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	107	321	84	404	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5688_CONTIG_1	3	-	626	1	incomplete-splice_match	CLDN1	ENST00000295522	3481	4	2591	265	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4787_CONTIG_1	16	+	368	1	incomplete-splice_match	HP	ENST00000565574	1187	5	341	479	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	109	327	41	367	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3607_CONTIG_1	9	+	2170	1	antisense	novelGene_NFIL3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1694_CONTIG_1	5	+	1808	1	genic_intron	novelGene_573	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_338_CONTIG_1	10	+	1232	1	genic_intron	novelGene_550	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7802_CONTIG_1	12	-	489	1	novel_in_catalog	ITGA5	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6228_CONTIG_1	2	-	1751	1	novel_in_catalog	AC018462.2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5792_CONTIG_1	2	+	420	1	genic_intron	novelGene_671	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8314_CONTIG_1	9	-	635	1	genic_intron	novelGene_579	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_820_CONTIG_1	2	+	975	1	genic_intron	novelGene_882	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2926_CONTIG_1	20	-	483	1	genic_intron	novelGene_356	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3165_CONTIG_1	3	+	779	1	genic_intron	novelGene_380	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2759_CONTIG_1	3	-	547	1	genic_intron	novelGene_436	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8141_CONTIG_1	5	-	816	1	incomplete-splice_match	PDGFRB	ENST00000261799	5717	23	4594	308	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5631_CONTIG_1	MT	+	910	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	96	553	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1792_CONTIG_1	14	-	1251	1	incomplete-splice_match	ZFP36L1	ENST00000555997	3094	2	1837	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3211_CONTIG_1	15	+	755	1	full-splice_match	EID1	ENST00000530028	2298	1	260	1283	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	187	561	32	592	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2465_CONTIG_1	16	-	761	1	genic_intron	novelGene_345	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8417_CONTIG_1	4	-	1183	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1026	40	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	537	986	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5170_CONTIG_1	12	+	674	1	genic_intron	novelGene_499	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_8573_CONTIG_1	14	-	935	1	genic_intron	novelGene_502	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1489_CONTIG_1	7	+	272	1	incomplete-splice_match	COL1A2	ENST00000297268	5411	52	4525	615	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8229_CONTIG_1	GL000220.1	+	743	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	538	588	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8160_CONTIG_1	GL000220.1	+	372	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	928	569	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2948_CONTIG_1	1	+	1712	1	genic_intron	novelGene_46	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2788_CONTIG_1	10	-	807	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1845	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2973_CONTIG_1	2	-	697	1	genic_intron	novelGene_895	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3330_CONTIG_1	11	-	908	1	incomplete-splice_match	RELA	ENST00000308639	2681	11	1765	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8664_CONTIG_1	7	+	540	1	genic_intron	novelGene_366	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_742_CONTIG_1	3	+	1378	1	novel_in_catalog	ARHGEF26	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6818_CONTIG_1	3	-	960	1	genic_intron	novelGene_441	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_261_CONTIG_1	20	+	297	1	genic_intron	novelGene_207	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4384_CONTIG_1	7	-	572	1	incomplete-splice_match	TMED4	ENST00000289577	2203	4	1514	118	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3679_CONTIG_1	22	-	927	1	genic	THOC5	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4882_CONTIG_1	17	-	1250	1	incomplete-splice_match	CRK	ENST00000398970	3675	3	2362	64	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7671_CONTIG_1	GL000220.1	+	378	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	0	4692	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3308_CONTIG_1	1	-	1005	1	incomplete-splice_match	ERRFI1	ENST00000377482	3104	4	2090	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4179_CONTIG_1	12	+	840	1	novel_in_catalog	WNK1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	83	249	253	501	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2713_CONTIG_1	11	+	1412	1	full-splice_match	RP11-137N23.1	ENST00000537438	499	1	-120	-793	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	7	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2882_CONTIG_1	17	-	951	1	genic_intron	novelGene_9	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1103_CONTIG_1	19	+	796	1	novel_in_catalog	SNAPC2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	97	291	28	318	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6235_CONTIG_1	1	-	916	1	intergenic	novelGene_919	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4010_CONTIG_1	5	-	1571	1	genic_intron	novelGene_455	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7441_CONTIG_1	MT	+	1536	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1038_CONTIG_1	2	+	1234	1	genic_intron	novelGene_922	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5271_CONTIG_1	16	+	280	1	genic_intron	novelGene_47	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3652_CONTIG_1	7	+	1183	1	genic_intron	novelGene_563	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1929_CONTIG_1	9	-	1309	1	genic_intron	novelGene_522	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3555_CONTIG_1	20	+	1625	1	novel_in_catalog	LBP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	151	453	204	656	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1200_CONTIG_1	11	+	677	1	antisense	novelGene_SAA4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5830_CONTIG_1	12	+	1431	1	genic_intron	novelGene_701	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8597_CONTIG_1	11	+	1462	1	genic_intron	novelGene_478	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1341_CONTIG_1	5	-	1535	1	genic_intron	novelGene_473	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4071_CONTIG_1	1	+	338	1	incomplete-splice_match	ZBTB37	ENST00000367701	19128	4	17198	1593	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2924_CONTIG_1	13	-	654	1	genic_intron	novelGene_710	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2649_CONTIG_1	9	-	616	1	genic_intron	novelGene_747	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4544_CONTIG_1	5	-	443	1	genic_intron	novelGene_626	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6408_CONTIG_1	17	-	922	1	genic_intron	novelGene_450	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3004_CONTIG_1	4	-	381	1	incomplete-splice_match	ADH1B	ENST00000394887	4059	9	1447	2232	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7809_CONTIG_1	15	-	1266	1	intergenic	novelGene_319	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4052_CONTIG_1	1	-	562	1	genic_intron	novelGene_643	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3542_CONTIG_1	MT	+	1544	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2331_CONTIG_1	MT	+	799	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	760	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5667_CONTIG_1	2	+	458	1	genic_intron	novelGene_831	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7276_CONTIG_1	9	-	1079	1	novel_in_catalog	ECM2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1297_CONTIG_1	2	+	698	1	novel_in_catalog	ID2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	141	423	111	533	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6349_CONTIG_1	12	+	417	1	incomplete-splice_match	ISCU	ENST00000311893	994	5	513	65	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1938_CONTIG_1	18	-	353	1	genic_intron	novelGene_197	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8721_CONTIG_1	3	+	363	1	incomplete-splice_match	AHSG	ENST00000273784	1553	7	1017	174	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6525_CONTIG_1	GL000220.1	+	359	1	intergenic	novelGene_2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2771_CONTIG_1	3	-	1558	1	genic_intron	novelGene_853	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8363_CONTIG_1	12	-	1507	1	novel_in_catalog	IGF1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4877_CONTIG_1	4	+	731	1	genic_intron	novelGene_275	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8239_CONTIG_1	1	+	1562	1	antisense	novelGene_DUSP10_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7541_CONTIG_1	16	+	1509	1	genic_intron	novelGene_565	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5241_CONTIG_1	10	-	1455	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1204	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4102_CONTIG_1	MT	-	932	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7369_CONTIG_1	8	-	334	1	antisense	novelGene_SLC39A14_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5403_CONTIG_1	6	-	1772	1	full-splice_match	CBX3P9	ENST00000402326	552	1	-90	-1130	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	12	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1219_CONTIG_1	14	+	922	1	incomplete-splice_match	SERPINA5	ENST00000554276	2210	5	1262	27	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3879_CONTIG_1	5	+	1061	1	genic_intron	novelGene_783	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5886_CONTIG_1	5	-	1387	1	genic_intron	novelGene_305	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5344_CONTIG_1	12	-	776	1	incomplete-splice_match	SLC38A4	ENST00000447411	3789	16	3001	13	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2715_CONTIG_1	4	-	350	1	genic_intron	novelGene_10	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6749_CONTIG_1	16	+	409	1	antisense	novelGene_CNOT1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_7598_CONTIG_1	10	-	1207	1	genic_intron	novelGene_716	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_2981_CONTIG_1	6	+	504	1	genic_intron	novelGene_692	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3721_CONTIG_1	9	-	804	1	genic_intron	novelGene_580	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5920_CONTIG_1	4	-	1195	1	genic_intron	novelGene_110	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_2427_CONTIG_1	MT	-	684	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5436_CONTIG_1	MT	-	464	1	full-splice_match	MT-ND6	ENST00000361681	525	1	253	-192	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7374_CONTIG_1	9	+	397	1	novel_in_catalog	UBAP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_681_CONTIG_1	8	-	1245	1	incomplete-splice_match	TCEA1	ENST00000396401	2718	9	1348	126	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3639_CONTIG_1	10	-	1179	1	incomplete-splice_match	KLF6	ENST00000542957	4537	3	2345	1014	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8112_CONTIG_1	4	+	763	1	incomplete-splice_match	DCUN1D4	ENST00000381441	4207	10	2956	489	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_118_CONTIG_1	MT	+	1534	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4993_CONTIG_1	12	-	1071	1	genic_intron	novelGene_322	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1913_CONTIG_1	MT	+	696	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2866_CONTIG_1	15	-	424	1	genic_intron	novelGene_537	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6565_CONTIG_1	10	-	1361	1	incomplete-splice_match	MBL2	ENST00000373968	3569	4	2168	41	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6923_CONTIG_1	4	+	1227	1	genic_intron	novelGene_516	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6181_CONTIG_1	21	+	2096	1	genic_intron	novelGene_285	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2185_CONTIG_1	19	-	418	1	incomplete-splice_match	PGLYRP2	ENST00000340880	2230	5	772	1041	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	92	276	143	418	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4082_CONTIG_1	4	-	304	1	incomplete-splice_match	ADH4	ENST00000423445	1961	9	1534	124	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5263_CONTIG_1	5	-	1048	1	genic_intron	novelGene_789	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7196_CONTIG_1	3	+	291	1	incomplete-splice_match	HRG	ENST00000232003	2015	7	927	798	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4690_CONTIG_1	12	-	1501	1	genic_intron	novelGene_341	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	95	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_997_CONTIG_1	4	-	1439	1	incomplete-splice_match	HNRNPDL	ENST00000507721	1672	3	220	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3175_CONTIG_1	14	+	778	1	genic_intron	novelGene_480	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5242_CONTIG_1	10	-	1558	1	incomplete-splice_match	ERLIN1	ENST00000421367	5792	11	4116	119	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5879_CONTIG_1	GL000220.1	+	534	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	884	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5060_CONTIG_1	4	-	1082	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1128	39	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	435	884	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4661_CONTIG_1	17	-	533	1	genic_intron	novelGene_250	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7042_CONTIG_1	6	-	633	1	antisense	novelGene_TPD52L1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7290_CONTIG_1	12	-	1529	1	genic_intron	novelGene_73	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1890_CONTIG_1	MT	+	1558	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1245_CONTIG_1	6	-	2002	1	genic_intron	novelGene_749	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_337_CONTIG_1	1	+	1356	1	genic_intron	novelGene_453	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3760_CONTIG_1	22	-	1571	1	genic_intron	novelGene_328	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4118_CONTIG_1	7	+	2023	1	intergenic	novelGene_95	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4416_CONTIG_1	11	+	633	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3952	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6752_CONTIG_1	3	-	1219	1	genic_intron	novelGene_81	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3022_CONTIG_1	21	-	932	1	genic_intron	novelGene_210	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2581_CONTIG_1	X	-	1896	1	novel_in_catalog	HUWE1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3422_CONTIG_1	12	+	778	1	genic_intron	novelGene_80	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_212_CONTIG_1	12	+	530	1	incomplete-splice_match	MGST1	ENST00000010404	901	4	356	16	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2808_CONTIG_1	2	-	1082	1	genic_intron	novelGene_924	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1327_CONTIG_1	11	+	661	1	incomplete-splice_match	TSKU	ENST00000333090	2712	2	296	1756	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	210	630	32	661	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_459_CONTIG_1	11	+	721	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3864	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4552_CONTIG_1	9	+	1118	1	intergenic	novelGene_156	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6653_CONTIG_1	X	+	2527	1	novel_in_catalog	MAOA	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4310_CONTIG_1	17	-	1307	1	antisense	novelGene_TOM1L1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_163_CONTIG_1	4	+	1419	1	novel_in_catalog	FGB	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1908_CONTIG_1	22	+	491	1	genic_intron	novelGene_300	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2555_CONTIG_1	10	-	1630	1	novel_in_catalog	GDF2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6799_CONTIG_1	12	+	438	1	incomplete-splice_match	ERP29	ENST00000455836	1333	2	617	279	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1023_CONTIG_1	16	+	520	1	genic	ZNRF1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5626_CONTIG_1	10	-	1324	1	novel_in_catalog	CXCL12	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4404_CONTIG_1	7	+	1361	1	novel_in_catalog	SERPINE1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3324_CONTIG_1	22	+	515	1	genic_intron	novelGene_204	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7568_CONTIG_1	19	-	419	1	genic_intron	novelGene_34	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_894_CONTIG_1	MT	+	699	1	full-splice_match	MT-ATP6	ENST00000361899	681	1	-22	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3295_CONTIG_1	20	+	298	1	incomplete-splice_match	PCK1	ENST00000319441	2686	10	2055	334	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6060_CONTIG_1	11	-	1335	1	antisense	novelGene_NNMT_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6900_CONTIG_1	7	-	353	1	incomplete-splice_match	AZGP1	ENST00000483612	679	2	317	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8261_CONTIG_1	22	-	802	1	genic_intron	novelGene_344	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5515_CONTIG_1	3	-	1077	1	incomplete-splice_match	GOLGB1	ENST00000489400	3093	9	1726	291	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6576_CONTIG_1	16	-	913	1	antisense	novelGene_ACSM2A_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5331_CONTIG_1	1	-	1107	1	antisense	novelGene_NBPF12_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3861_CONTIG_1	5	-	909	1	genic	C9	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_585_CONTIG_1	GL000220.1	+	492	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	73	1304	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_30_CONTIG_1	MT	+	1502	1	full-splice_match	MT-ND1	ENST00000361390	956	1	-555	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2724_CONTIG_1	3	+	548	1	incomplete-splice_match	PAK2	ENST00000327134	6139	15	5254	338	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1833_CONTIG_1	11	-	2163	1	antisense	novelGene_RCE1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2546_CONTIG_1	2	-	1433	1	genic_intron	novelGene_916	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8459_CONTIG_1	3	+	856	1	incomplete-splice_match	FAM131A	ENST00000340957	2421	6	1504	62	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1051_CONTIG_1	6	-	404	1	genic_intron	novelGene_862	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3900_CONTIG_1	2	-	1608	1	genic_intron	novelGene_914	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3153_CONTIG_1	10	+	1074	1	incomplete-splice_match	PGAM1	ENST00000334828	1830	4	756	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2369_CONTIG_1	9	+	1135	1	genic_intron	novelGene_593	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4292_CONTIG_1	7	-	1951	1	genic_intron	novelGene_184	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3747_CONTIG_1	8	+	1316	1	antisense	novelGene_ADRA1A_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8205_CONTIG_1	GL000220.1	+	340	1	full-splice_match	RNA28S5	ENST00000607521	5070	1	0	4730	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6764_CONTIG_1	X	+	589	1	intergenic	novelGene_512	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5441_CONTIG_1	6	-	1640	1	incomplete-splice_match	FKBP5	ENST00000357266	3772	11	2127	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2482_CONTIG_1	3	-	772	1	genic_intron	novelGene_869	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8724_CONTIG_1	MT	-	1287	1	antisense	novelGene_MT-ND5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3895_CONTIG_1	2	-	1397	1	genic_intron	novelGene_895	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6513_CONTIG_1	13	-	1338	1	antisense	novelGene_SPATA13_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3299_CONTIG_1	6	+	1114	1	genic_intron	novelGene_294	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_6026_CONTIG_1	1	-	1068	1	incomplete-splice_match	ERRFI1	ENST00000377482	3104	4	567	1470	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	117	351	694	1044	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2791_CONTIG_1	3	-	290	1	genic_intron	novelGene_655	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5442_CONTIG_1	9	+	521	1	antisense	novelGene_PSMB7_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_482_CONTIG_1	1	+	1492	1	antisense	novelGene_AHDC1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1080_CONTIG_1	5	+	827	1	incomplete-splice_match	GPX3	ENST00000388825	1636	5	806	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2056_CONTIG_1	MT	-	1903	1	full-splice_match	MT-ND6	ENST00000361681	525	1	132	-1510	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7731_CONTIG_1	7	+	1705	1	incomplete-splice_match	EIF4H	ENST00000353999	2503	6	795	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7085_CONTIG_1	7	-	1324	1	genic_intron	novelGene_472	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8560_CONTIG_1	14	-	321	1	incomplete-splice_match	SERPINA1	ENST00000402629	1450	4	197	933	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	75	225	97	321	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5014_CONTIG_1	15	+	744	1	incomplete-splice_match	GLCE	ENST00000559420	4840	3	3337	760	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3302_CONTIG_1	1	+	1083	1	incomplete-splice_match	CD46	ENST00000360212	3081	10	1943	56	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6147_CONTIG_1	7	+	713	1	genic	AKR1D1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2483_CONTIG_1	12	+	298	1	antisense	novelGene_A2M_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2496_CONTIG_1	11	+	544	1	incomplete-splice_match	TIMM10B	ENST00000254616	2840	3	2134	163	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2534_CONTIG_1	14	+	1109	1	novel_in_catalog	ARID4A	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2020_CONTIG_1	2	+	1891	1	incomplete-splice_match	EPT1	ENST00000260585	8101	10	6199	12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2580_CONTIG_1	15	+	570	1	genic_intron	novelGene_592	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3697_CONTIG_1	20	+	584	1	genic_intron	novelGene_235	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7_CONTIG_1	7	+	2465	1	antisense	novelGene_CYP3A5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4650_CONTIG_1	7	-	266	1	incomplete-splice_match	TMED4	ENST00000289577	2203	4	1820	118	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7292_CONTIG_1	GL000220.1	+	305	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1018	546	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2227_CONTIG_1	21	-	1621	1	incomplete-splice_match	RCAN1	ENST00000399272	2164	4	526	18	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2800_CONTIG_1	5	-	1791	1	genic_intron	novelGene_385	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6596_CONTIG_1	13	-	2088	1	genic_intron	novelGene_378	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7421_CONTIG_1	MT	+	1536	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1439_CONTIG_1	3	+	628	1	incomplete-splice_match	CDV3	ENST00000264993	3307	5	2675	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6993_CONTIG_1	6	-	669	1	novel_in_catalog	VNN3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2950_CONTIG_1	11	-	415	1	incomplete-splice_match	THY1	ENST00000284240	3554	4	2328	812	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6708_CONTIG_1	MT	+	387	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	750	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3110_CONTIG_1	11	+	734	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3851	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4556_CONTIG_1	20	-	976	1	genic_intron	novelGene_404	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5994_CONTIG_1	19	-	1580	1	antisense	novelGene_RELB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4283_CONTIG_1	14	+	811	1	genic_intron	novelGene_223	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1804_CONTIG_1	6	+	2030	1	genic	MLIP-IT1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	4	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1158_CONTIG_1	10	+	429	1	genic_intron	novelGene_549	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_131_CONTIG_1	12	+	918	1	genic_intron	novelGene_324	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4205_CONTIG_1	X	-	1688	1	genic_intron	novelGene_309	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_83_CONTIG_1	5	-	459	1	genic_intron	novelGene_879	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2368_CONTIG_1	GL000220.1	+	262	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	787	820	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_375_CONTIG_1	MT	+	404	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	1154	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6338_CONTIG_1	8	-	369	1	genic_intron	novelGene_160	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_654_CONTIG_1	20	+	1248	1	genic_intron	novelGene_376	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5876_CONTIG_1	9	-	236	1	incomplete-splice_match	SHB	ENST00000377707	2783	6	2010	538	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3780_CONTIG_1	6	-	988	1	full-splice_match	TSPYL1	ENST00000368608	3326	1	2192	146	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7810_CONTIG_1	3	-	1344	1	genic_intron	novelGene_659	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4160_CONTIG_1	17	-	1590	1	genic	DDX5	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_9_CONTIG_1	1	+	2425	1	genic_intron	novelGene_819	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4949_CONTIG_1	3	+	987	1	genic_intron	novelGene_824	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1881_CONTIG_1	10	-	360	1	genic_intron	novelGene_620	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_1096_CONTIG_1	4	+	1230	1	genic_intron	novelGene_827	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4823_CONTIG_1	7	+	1000	1	incomplete-splice_match	EIF4H	ENST00000353999	2503	6	1400	104	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3481_CONTIG_1	9	-	1324	1	incomplete-splice_match	RAB14	ENST00000373840	4145	8	1616	1206	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1760_CONTIG_1	3	-	705	1	genic_intron	novelGene_323	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7003_CONTIG_1	MT	-	950	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3119_CONTIG_1	22	+	1014	1	intergenic	novelGene_293	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_18_CONTIG_1	1	-	268	1	novel_in_catalog	C1orf109	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2143_CONTIG_1	6	+	2164	1	novel_in_catalog	MTHFD1L	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1875_CONTIG_1	1	-	382	1	incomplete-splice_match	PUM1	ENST00000498419	3068	17	2657	30	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7326_CONTIG_1	11	+	724	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3861	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2083_CONTIG_1	MT	-	748	1	antisense	novelGene_MT-ND5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2122_CONTIG_1	3	+	2175	1	genic_intron	novelGene_418	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5075_CONTIG_1	10	-	1515	1	incomplete-splice_match	C10orf10	ENST00000298295	2120	2	423	183	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	115	345	88	432	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4440_CONTIG_1	19	-	318	1	incomplete-splice_match	AES	ENST00000586742	1666	6	1173	176	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7803_CONTIG_1	3	+	1049	1	genic_intron	novelGene_828	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4905_CONTIG_1	12	-	415	1	genic_intron	novelGene_678	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8176_CONTIG_1	8	+	1170	1	incomplete-splice_match	SLC39A14	ENST00000359741	4641	9	3411	61	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2660_CONTIG_1	6	-	1012	1	genic_intron	novelGene_59	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1582_CONTIG_1	1	+	1264	1	genic_intron	novelGene_274	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1105_CONTIG_1	14	-	840	1	genic_intron	novelGene_624	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1551_CONTIG_1	X	+	545	1	genic_intron	novelGene_530	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7233_CONTIG_1	12	-	855	1	genic_intron	novelGene_168	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5961_CONTIG_1	MT	+	354	1	full-splice_match	MT-ND1	ENST00000361390	956	1	530	72	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_260_CONTIG_1	11	+	1149	1	genic_intron	novelGene_129	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4461_CONTIG_1	12	+	357	1	incomplete-splice_match	NR4A1	ENST00000562373	838	3	328	154	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	99	297	59	355	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7610_CONTIG_1	12	+	2043	1	novel_in_catalog	LETMD1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2350_CONTIG_1	11	+	648	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3937	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7573_CONTIG_1	4	-	1327	1	incomplete-splice_match	ACSL1	ENST00000503407	2409	9	1015	68	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1499_CONTIG_1	19	+	625	1	incomplete-splice_match	SAMD4B	ENST00000314471	4519	16	3861	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1082_CONTIG_1	15	-	854	1	intergenic	novelGene_382	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4068_CONTIG_1	12	-	1631	1	novel_in_catalog	A2M	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7840_CONTIG_1	17	+	337	1	genic_intron	novelGene_103	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1211_CONTIG_1	3	-	1240	1	antisense	novelGene_MKRN2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3078_CONTIG_1	MT	+	967	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	169	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2513_CONTIG_1	MT	+	1557	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4023_CONTIG_1	12	+	1803	1	genic_intron	novelGene_165	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5401_CONTIG_1	4	-	1515	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2115	49	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7036_CONTIG_1	MT	+	1331	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	228	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7225_CONTIG_1	4	-	1779	1	genic_intron	novelGene_688	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3303_CONTIG_1	2	-	367	1	genic_intron	novelGene_883	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8678_CONTIG_1	2	-	463	1	genic_intron	novelGene_258	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7649_CONTIG_1	17	+	2001	1	incomplete-splice_match	HLF	ENST00000573945	2977	4	974	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7037_CONTIG_1	MT	+	688	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	210	661	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3177_CONTIG_1	8	+	1093	1	genic_intron	novelGene_151	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3401_CONTIG_1	6	+	298	1	incomplete-splice_match	CDKN1A	ENST00000244741	2180	3	1878	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4770_CONTIG_1	9	-	409	1	incomplete-splice_match	FBXW5	ENST00000487794	1932	5	1364	160	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6998_CONTIG_1	9	+	1475	1	genic	USP20	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6995_CONTIG_1	5	-	399	1	genic_intron	novelGene_255	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8608_CONTIG_1	13	+	790	1	genic_intron	novelGene_561	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_876_CONTIG_1	1	-	1639	1	novel_in_catalog	ENO1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4168_CONTIG_1	9	-	295	1	genic_intron	novelGene_528	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7283_CONTIG_1	9	-	2411	1	genic_intron	novelGene_26	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4670_CONTIG_1	6	+	1308	1	genic_intron	novelGene_865	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5902_CONTIG_1	MT	+	373	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	156	1030	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4131_CONTIG_1	MT	+	771	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	788	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5860_CONTIG_1	14	-	510	1	genic_intron	novelGene_624	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5702_CONTIG_1	3	-	1123	1	incomplete-splice_match	CLDN1	ENST00000295522	3481	4	2321	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1375_CONTIG_1	3	-	757	1	genic_intron	novelGene_501	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7413_CONTIG_1	13	-	1176	1	genic_intron	novelGene_638	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6682_CONTIG_1	MT	-	1584	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3002_CONTIG_1	MT	+	1547	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	12	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6424_CONTIG_1	14	+	1550	1	genic_intron	novelGene_625	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4231_CONTIG_1	2	+	945	1	full-splice_match	RHOB	ENST00000272233	2366	1	1290	131	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5610_CONTIG_1	12	+	1678	1	incomplete-splice_match	ERC1	ENST00000543086	9241	18	7560	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8583_CONTIG_1	11	-	421	1	antisense	novelGene_C11orf58_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1721_CONTIG_1	2	-	1802	1	antisense	novelGene_KYNU_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3079_CONTIG_1	MT	+	292	1	full-splice_match	MT-ND1	ENST00000361390	956	1	651	13	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8385_CONTIG_1	MT	-	832	1	antisense	novelGene_MT-ND2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_551_CONTIG_1	1	-	1009	1	genic_intron	novelGene_888	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2495_CONTIG_1	2	-	422	1	incomplete-splice_match	ADAM17	ENST00000310823	4349	19	3893	35	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2225_CONTIG_1	5	-	772	1	incomplete-splice_match	IL6ST	ENST00000381287	8667	14	3262	4634	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5613_CONTIG_1	11	+	617	1	genic_intron	novelGene_693	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6582_CONTIG_1	MT	-	1137	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2000_CONTIG_1	12	-	359	1	antisense	novelGene_HSP90B1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_583_CONTIG_1	1	-	1803	1	genic_intron	novelGene_847	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5406_CONTIG_1	MT	+	1040	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	38	481	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8571_CONTIG_1	3	-	1093	1	full-splice_match	EPM2AIP1	ENST00000322716	7439	1	2859	3487	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3051_CONTIG_1	11	-	664	1	genic_intron	novelGene_489	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3087_CONTIG_1	12	+	1351	1	genic_intron	novelGene_16	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3327_CONTIG_1	16	+	2236	1	novel_in_catalog	CYLD	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4797_CONTIG_1	17	+	635	1	incomplete-splice_match	RARA	ENST00000394086	2008	8	1240	134	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5041_CONTIG_1	8	-	1838	1	incomplete-splice_match	MFHAS1	ENST00000276282	6414	3	1748	2829	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	585	1755	83	1837	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3412_CONTIG_1	10	+	999	1	incomplete-splice_match	SLK	ENST00000335753	7673	18	6670	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4037_CONTIG_1	3	+	709	1	antisense	novelGene_PLD1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_373_CONTIG_1	1	-	1571	1	genic_intron	novelGene_410	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1710_CONTIG_1	4	-	1199	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1025	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	538	987	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_159_CONTIG_1	16	+	609	1	incomplete-splice_match	CLEC16A	ENST00000381822	4203	4	2909	686	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3369_CONTIG_1	4	+	294	1	incomplete-splice_match	FGB	ENST00000502545	1320	7	1012	15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2176_CONTIG_1	11	-	799	1	genic	AC132217.4	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4377_CONTIG_1	20	-	1956	1	antisense	novelGene_LBP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	110	330	819	1148	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1413_CONTIG_1	20	-	1766	1	antisense	novelGene_PCK1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8514_CONTIG_1	10	+	773	1	incomplete-splice_match	PDCD4	ENST00000280154	3602	12	1961	869	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1613_CONTIG_1	14	+	1166	1	incomplete-splice_match	HIF1A	ENST00000323441	3555	14	2389	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_245_CONTIG_1	10	-	1178	1	incomplete-splice_match	MAT1A	ENST00000485270	2661	3	1435	49	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_579_CONTIG_1	2	+	943	1	novel_in_catalog	NABP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_625_CONTIG_1	MT	+	478	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1081	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7640_CONTIG_1	6	+	2060	1	genic_intron	novelGene_817	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_230_CONTIG_1	8	+	1011	1	antisense	novelGene_PSD3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4965_CONTIG_1	13	+	1216	1	genic_intron	novelGene_290	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2889_CONTIG_1	1	+	1240	1	genic_intron	novelGene_51	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3404_CONTIG_1	9	-	821	1	genic_intron	novelGene_751	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1063_CONTIG_1	20	+	2049	1	genic_intron	novelGene_212	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5911_CONTIG_1	4	-	1945	1	genic_intron	novelGene_11	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2320_CONTIG_1	15	-	362	1	full-splice_match	NDN	ENST00000331837	1886	1	682	842	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	78	234	128	361	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8138_CONTIG_1	2	-	279	1	genic_intron	novelGene_709	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3787_CONTIG_1	9	-	2083	1	genic_intron	novelGene_24	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2741_CONTIG_1	MT	+	1555	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5231_CONTIG_1	9	+	1397	1	incomplete-splice_match	RXRA	ENST00000356384	5770	12	4301	73	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1703_CONTIG_1	6	+	665	1	incomplete-splice_match	ATAT1	ENST00000473441	929	3	259	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3072_CONTIG_1	MT	+	535	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	189	654	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6690_CONTIG_1	16	-	1237	1	novel_in_catalog	MT1G	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	111	333	532	864	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4470_CONTIG_1	6	+	1161	1	genic_intron	novelGene_514	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3287_CONTIG_1	8	+	423	1	genic_intron	novelGene_737	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3948_CONTIG_1	1	+	1626	1	genic_intron	novelGene_810	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2102_CONTIG_1	9	-	690	1	novel_in_catalog	SETX	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1682_CONTIG_1	14	+	1858	1	intergenic	novelGene_167	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_507_CONTIG_1	19	+	299	1	antisense	novelGene_POLR2E_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5228_CONTIG_1	X	-	1502	1	incomplete-splice_match	F8	ENST00000360256	9059	26	2315	5243	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7779_CONTIG_1	13	+	1172	1	genic_intron	novelGene_647	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3659_CONTIG_1	6	+	372	1	genic_intron	novelGene_794	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_320_CONTIG_1	GL000220.1	+	267	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	281	1321	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2689_CONTIG_1	2	-	982	1	genic_intron	novelGene_517	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2755_CONTIG_1	1	-	1268	1	incomplete-splice_match	IRF2BP2	ENST00000366610	4615	2	2493	855	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3063_CONTIG_1	16	-	2038	1	genic_intron	novelGene_481	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8624_CONTIG_1	20	-	1419	1	novel_in_catalog	TGM2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	169	507	788	1294	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3232_CONTIG_1	16	+	1839	1	genic_intron	novelGene_70	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8102_CONTIG_1	12	-	974	1	incomplete-splice_match	ARL1	ENST00000261636	3241	6	2116	152	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1993_CONTIG_1	20	-	1312	1	genic_intron	novelGene_276	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2699_CONTIG_1	12	+	964	1	incomplete-splice_match	TMBIM6	ENST00000395006	2598	9	1632	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3630_CONTIG_1	2	-	391	1	genic_intron	novelGene_741	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5690_CONTIG_1	7	-	1072	1	incomplete-splice_match	DOCK4	ENST00000486186	3304	5	1923	310	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_26_CONTIG_1	GL000220.1	+	400	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1020	449	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1333_CONTIG_1	4	-	1218	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	986	45	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	150	450	577	1026	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_341_CONTIG_1	GL000220.1	+	1110	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	306	453	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3880_CONTIG_1	5	+	431	1	full-splice_match	RP11-36C20.1	ENST00000467270	629	1	-23	221	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7522_CONTIG_1	14	+	1740	1	genic_intron	novelGene_482	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5936_CONTIG_1	5	-	1504	1	novel_in_catalog	ELL2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4952_CONTIG_1	2	-	925	1	incomplete-splice_match	APOB	ENST00000233242	14121	29	13151	46	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5123_CONTIG_1	5	+	1764	1	genic_intron	novelGene_812	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7758_CONTIG_1	11	-	784	1	antisense	novelGene_EIF3M_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8468_CONTIG_1	12	-	488	1	genic_intron	novelGene_497	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_882_CONTIG_1	2	-	506	1	genic_intron	novelGene_448	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6926_CONTIG_1	13	+	1477	1	incomplete-splice_match	SPATA13	ENST00000382095	6665	12	5152	37	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7425_CONTIG_1	16	-	686	1	genic_intron	novelGene_500	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4633_CONTIG_1	2	-	1630	1	incomplete-splice_match	APOB	ENST00000233242	14121	29	12489	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2057_CONTIG_1	11	-	901	1	incomplete-splice_match	SLC25A22	ENST00000320230	2894	10	1824	170	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	153	459	338	796	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4062_CONTIG_1	12	+	1280	1	antisense	novelGene_A2M_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4497_CONTIG_1	17	+	1216	1	genic_intron	novelGene_564	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3364_CONTIG_1	16	-	2025	1	intergenic	novelGene_54	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6318_CONTIG_1	17	-	1597	1	genic_intron	novelGene_182	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3545_CONTIG_1	3	-	2092	1	incomplete-splice_match	EHHADH	ENST00000231887	3850	7	1555	204	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4951_CONTIG_1	13	+	258	1	genic_intron	novelGene_637	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6141_CONTIG_1	GL000220.1	+	590	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	286	993	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8062_CONTIG_1	6	-	310	1	genic_intron	novelGene_40	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1691_CONTIG_1	1	+	1691	1	genic_intron	novelGene_806	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3898_CONTIG_1	1	+	1032	1	genic_intron	novelGene_388	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6670_CONTIG_1	X	+	2099	1	genic_intron	novelGene_214	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	4	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_43_CONTIG_1	9	+	1478	1	incomplete-splice_match	NEK6	ENST00000545174	2573	10	1038	58	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	52	156	191	346	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3149_CONTIG_1	16	+	353	1	novel_in_catalog	QPRT	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2990_CONTIG_1	MT	+	1501	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	58	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6505_CONTIG_1	5	-	1625	1	genic_intron	novelGene_861	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_25_CONTIG_1	16	-	647	1	genic_intron	novelGene_65	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7507_CONTIG_1	13	-	1237	1	genic_intron	novelGene_291	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8662_CONTIG_1	4	-	1845	1	novel_in_catalog	FGA	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1699_CONTIG_1	MT	+	345	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	1108	106	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5234_CONTIG_1	13	-	1032	1	intergenic	novelGene_690	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6794_CONTIG_1	1	-	1997	1	genic_intron	novelGene_135	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1282_CONTIG_1	MT	+	1560	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3414_CONTIG_1	11	-	294	1	genic_intron	novelGene_50	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1493_CONTIG_1	1	-	764	1	incomplete-splice_match	CRP	ENST00000255030	2015	2	527	725	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8238_CONTIG_1	16	-	1694	1	antisense	novelGene_HSD17B2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3511_CONTIG_1	10	+	752	1	genic_intron	novelGene_145	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1367_CONTIG_1	MT	+	816	1	full-splice_match	MT-ATP6	ENST00000361899	681	1	-138	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1146_CONTIG_1	8	-	852	1	genic_intron	novelGene_68	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	156	468	52	519	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1485_CONTIG_1	GL000220.1	+	820	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	182	867	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5516_CONTIG_1	16	+	1482	1	genic_intron	novelGene_508	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5783_CONTIG_1	17	-	2345	1	incomplete-splice_match	SOCS3	ENST00000330871	2729	2	368	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	coding	225	675	50	724	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8626_CONTIG_1	11	-	1385	1	genic	AC132217.4	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_609_CONTIG_1	16	-	410	1	genic_intron	novelGene_491	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2538_CONTIG_1	GL000220.1	+	576	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	866	427	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3623_CONTIG_1	2	+	2287	1	genic	AC009948.5	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	4	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2814_CONTIG_1	MT	+	1543	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	16	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8293_CONTIG_1	4	-	1638	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	592	19	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	419	1257	164	1420	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7554_CONTIG_1	MT	+	1573	1	full-splice_match	MT-CO1	ENST00000361624	1542	1	-3	-28	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4794_CONTIG_1	MT	+	1140	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4121_CONTIG_1	4	+	1393	1	genic_intron	novelGene_834	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7034_CONTIG_1	19	-	683	1	genic_intron	novelGene_125	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3647_CONTIG_1	5	-	480	1	incomplete-splice_match	SEPP1	ENST00000511224	1853	6	1202	172	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3019_CONTIG_1	12	+	2061	1	genic_intron	novelGene_698	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	0	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8354_CONTIG_1	14	-	1153	1	genic_intron	novelGene_398	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1667_CONTIG_1	1	-	1408	1	incomplete-splice_match	CRP	ENST00000255030	2015	2	521	87	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6628_CONTIG_1	1	+	1657	1	antisense	novelGene_ARID4B_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6949_CONTIG_1	MT	+	1126	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6483_CONTIG_1	3	-	750	1	incomplete-splice_match	PLOD2	ENST00000461497	3043	10	1938	356	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_399_CONTIG_1	14	-	891	1	genic_intron	novelGene_458	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8021_CONTIG_1	11	-	746	1	intergenic	novelGene_474	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_1920_CONTIG_1	20	-	1362	1	genic_intron	novelGene_358	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7142_CONTIG_1	16	+	716	1	incomplete-splice_match	HP	ENST00000570083	1270	5	554	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	117	548	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8515_CONTIG_1	16	+	1647	1	incomplete-splice_match	ABAT	ENST00000268251	4836	16	3157	33	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_397_CONTIG_1	18	+	260	1	incomplete-splice_match	ANKRD12	ENST00000577992	390	2	41	90	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2385_CONTIG_1	16	+	559	1	incomplete-splice_match	HP	ENST00000398131	1252	5	691	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	107	321	74	394	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4591_CONTIG_1	2	-	1055	1	novel_in_catalog	FN1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4516_CONTIG_1	9	+	1550	1	antisense	novelGene_CBWD5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6359_CONTIG_1	8	-	1476	1	incomplete-splice_match	PNMA2	ENST00000522362	4965	3	3429	61	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1664_CONTIG_1	17	-	1138	1	incomplete-splice_match	GRB2	ENST00000392563	2851	4	1595	119	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6843_CONTIG_1	3	+	1736	1	genic_intron	novelGene_114	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1399_CONTIG_1	7	-	726	1	genic_intron	novelGene_546	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_3631_CONTIG_1	16	+	934	1	novel_in_catalog	HP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	228	684	96	779	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2182_CONTIG_1	MT	+	1504	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	55	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4515_CONTIG_1	9	-	1229	1	genic_intron	novelGene_39	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4649_CONTIG_1	13	+	1813	1	intergenic	novelGene_232	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3911_CONTIG_1	11	-	363	1	full-splice_match	RP11-466H18.1	ENST00000459748	321	1	-29	-13	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	106	318	30	347	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_684_CONTIG_1	10	+	424	1	genic_intron	novelGene_536	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_145_CONTIG_1	2	+	803	1	novel_in_catalog	STRADB	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7848_CONTIG_1	9	+	1417	1	genic_intron	novelGene_521	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7311_CONTIG_1	3	-	983	1	incomplete-splice_match	SLC2A2	ENST00000314251	3210	11	2213	15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4598_CONTIG_1	1	+	1101	1	full-splice_match	RP4-798A10.7	ENST00000562878	1110	1	-2	11	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7446_CONTIG_1	6	-	1230	1	genic_intron	novelGene_811	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8522_CONTIG_1	MT	-	748	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1066_CONTIG_1	3	+	301	1	genic_intron	novelGene_867	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5380_CONTIG_1	3	-	1503	1	genic_intron	novelGene_429	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8482_CONTIG_1	11	+	758	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3827	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6124_CONTIG_1	22	-	1714	1	genic_intron	novelGene_267	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8504_CONTIG_1	5	+	1624	1	incomplete-splice_match	EGR1	ENST00000239938	3138	2	1498	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5640_CONTIG_1	1	-	1068	1	genic	RP11-206L10.1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	155	465	249	713	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5967_CONTIG_1	16	+	825	1	incomplete-splice_match	HP	ENST00000398131	1252	5	419	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	235	666	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4614_CONTIG_1	MT	-	1139	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5467_CONTIG_1	3	-	1499	1	incomplete-splice_match	EHHADH	ENST00000231887	3850	7	2269	83	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_220_CONTIG_1	15	+	2115	1	genic_intron	novelGene_658	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8365_CONTIG_1	12	+	1317	1	antisense	novelGene_A2M_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8287_CONTIG_1	X	-	994	1	intergenic	novelGene_687	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4957_CONTIG_1	7	-	831	1	incomplete-splice_match	ZNF680	ENST00000309683	3022	4	1257	935	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3223_CONTIG_1	2	-	883	1	incomplete-splice_match	APOB	ENST00000233242	14121	29	13196	43	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4561_CONTIG_1	GL000220.1	+	566	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	73	1230	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_284_CONTIG_1	7	-	1174	1	genic_intron	novelGene_679	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2125_CONTIG_1	2	-	981	1	full-splice_match	RP11-332H14.2	ENST00000610036	3449	1	-32	2500	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2232_CONTIG_1	21	+	1351	1	genic_intron	novelGene_254	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_500_CONTIG_1	11	-	2273	1	antisense	novelGene_PPP6R3_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5303_CONTIG_1	9	-	1006	1	genic_intron	novelGene_720	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2847_CONTIG_1	MT	-	709	1	antisense	novelGene_MT-CO2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3245_CONTIG_1	2	+	1445	1	genic_intron	novelGene_911	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1332_CONTIG_1	20	-	1576	1	antisense	novelGene_LBP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5219_CONTIG_1	11	+	709	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3876	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2634_CONTIG_1	10	-	1451	1	novel_in_catalog	CXCL12	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1133_CONTIG_1	MT	+	1127	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7828_CONTIG_1	10	-	1719	1	genic_intron	novelGene_736	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_979_CONTIG_1	16	+	665	1	genic_intron	novelGene_63	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_379_CONTIG_1	2	-	1733	1	genic_intron	novelGene_333	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2905_CONTIG_1	12	+	1623	1	incomplete-splice_match	RAN	ENST00000448750	2455	6	789	44	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_219_CONTIG_1	18	+	1965	1	novel_in_catalog	ZNF271	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5531_CONTIG_1	11	+	692	1	antisense	novelGene_HPX_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1265_CONTIG_1	9	-	2148	1	incomplete-splice_match	CDC14B	ENST00000412285	5266	15	3051	68	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6448_CONTIG_1	7	-	585	1	incomplete-splice_match	YWHAG	ENST00000307630	3745	2	1891	1270	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3750_CONTIG_1	MT	+	1554	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8048_CONTIG_1	11	+	1050	1	genic	APLP2	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_793_CONTIG_1	1	-	1114	1	incomplete-splice_match	TOR1AIP2	ENST00000367612	7905	6	4431	2361	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6941_CONTIG_1	11	+	701	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3884	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2471_CONTIG_1	8	-	482	1	genic_intron	novelGene_69	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4989_CONTIG_1	3	+	1429	1	incomplete-splice_match	EIF4A2	ENST00000485101	5327	4	3839	60	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1509_CONTIG_1	7	+	1045	1	genic_intron	novelGene_846	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_523_CONTIG_1	11	+	524	1	incomplete-splice_match	TTC17	ENST00000533072	2607	2	1692	392	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4258_CONTIG_1	GL000220.1	+	287	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1131	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3716_CONTIG_1	6	-	1575	1	genic_intron	novelGene_760	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1269_CONTIG_1	15	+	410	1	genic_intron	novelGene_287	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3910_CONTIG_1	1	-	1351	1	genic_intron	novelGene_5	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8344_CONTIG_1	11	-	929	1	incomplete-splice_match	LGR4	ENST00000389858	5163	17	3920	315	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1826_CONTIG_1	12	-	415	1	genic_intron	novelGene_391	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_699_CONTIG_1	1	+	940	1	genic_intron	novelGene_407	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1956_CONTIG_1	6	+	1640	1	incomplete-splice_match	PHF3	ENST00000393387	6947	15	4761	547	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7911_CONTIG_1	12	+	468	1	incomplete-splice_match	PEBP1	ENST00000261313	1697	4	1154	76	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3692_CONTIG_1	16	+	1720	1	incomplete-splice_match	CBFB	ENST00000290858	3136	6	1410	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2983_CONTIG_1	MT	+	296	1	full-splice_match	MT-CO3	ENST00000362079	784	1	0	488	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7969_CONTIG_1	4	-	1111	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2559	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8570_CONTIG_1	GL000220.1	+	519	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	182	1168	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1088_CONTIG_1	2	-	865	1	genic_intron	novelGene_495	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7717_CONTIG_1	22	+	1573	1	genic_intron	novelGene_304	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2439_CONTIG_1	MT	+	1062	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	486	11	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5433_CONTIG_1	20	-	1073	1	antisense	novelGene_LBP_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	coding	91	273	45	317	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7983_CONTIG_1	5	-	450	1	antisense	novelGene_LEAP2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1587_CONTIG_1	20	+	1269	1	novel_in_catalog	PCK1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5986_CONTIG_1	MT	+	1650	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-289	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6646_CONTIG_1	1	+	624	1	genic_intron	novelGene_920	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8123_CONTIG_1	16	-	885	1	full-splice_match	GFOD2	ENST00000602522	2951	1	2057	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_419_CONTIG_1	9	-	1068	1	genic_intron	novelGene_706	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5422_CONTIG_1	11	+	721	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3864	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7676_CONTIG_1	1	-	695	1	incomplete-splice_match	CYP4A11	ENST00000475477	2138	9	1394	50	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1339_CONTIG_1	13	-	2364	1	genic_intron	novelGene_640	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1165_CONTIG_1	16	+	812	1	genic_intron	novelGene_569	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_119_CONTIG_1	4	-	385	1	incomplete-splice_match	UGT2B4	ENST00000512583	1836	5	1420	32	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3505_CONTIG_1	1	-	1127	1	incomplete-splice_match	RP1-187B23.1	ENST00000436991	2224	2	1089	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7116_CONTIG_1	20	+	214	1	incomplete-splice_match	HM13	ENST00000468559	675	4	305	157	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6809_CONTIG_1	12	-	1108	1	novel_in_catalog	LRP6	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_396_CONTIG_1	MT	+	1555	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5705_CONTIG_1	1	+	901	1	genic_intron	novelGene_240	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4782_CONTIG_1	MT	-	743	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_757_CONTIG_1	MT	+	1544	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	15	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1281_CONTIG_1	11	-	822	1	genic_intron	novelGene_476	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_911_CONTIG_1	MT	+	600	1	full-splice_match	MT-RNR1	ENST00000389680	954	1	354	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5680_CONTIG_1	18	-	1342	1	genic	SS18	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8152_CONTIG_1	12	-	1982	1	novel_in_catalog	C12orf66	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6304_CONTIG_1	X	+	1507	1	genic_intron	novelGene_519	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7812_CONTIG_1	12	+	666	1	genic_intron	novelGene_340	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1189_CONTIG_1	14	-	1391	1	incomplete-splice_match	ENTPD5	ENST00000334696	5842	16	3888	564	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3942_CONTIG_1	1	-	691	1	full-splice_match	JUN	ENST00000371222	3321	1	2037	593	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5431_CONTIG_1	11	-	447	1	incomplete-splice_match	APOA1	ENST00000375329	927	2	474	7	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	96	288	107	394	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2612_CONTIG_1	MT	+	1554	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7672_CONTIG_1	14	-	1421	1	genic_intron	novelGene_624	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3336_CONTIG_1	2	-	553	1	incomplete-splice_match	IDH1	ENST00000446179	2298	10	1666	80	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4427_CONTIG_1	1	-	913	1	incomplete-splice_match	FMO5	ENST00000369272	2168	7	1256	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5065_CONTIG_1	1	+	872	1	incomplete-splice_match	CDC42	ENST00000400259	2148	6	1264	13	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6120_CONTIG_1	19	+	296	1	incomplete-splice_match	GADD45B	ENST00000215631	1373	4	795	283	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4312_CONTIG_1	7	-	1428	1	full-splice_match	CTB-152G17.6	ENST00000607968	2646	1	177	1041	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8609_CONTIG_1	GL000220.1	+	495	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	306	1068	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5682_CONTIG_1	11	-	573	1	genic_intron	novelGene_112	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1648_CONTIG_1	18	+	805	1	genic_intron	novelGene_394	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6242_CONTIG_1	21	+	918	1	genic_intron	novelGene_284	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8726_CONTIG_1	MT	-	1409	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6395_CONTIG_1	4	-	1405	1	incomplete-splice_match	FGA	ENST00000302053	3678	6	2200	74	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3950_CONTIG_1	3	+	372	1	incomplete-splice_match	EIF4A2	ENST00000497177	849	3	323	155	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_994_CONTIG_1	1	+	1163	1	genic_intron	novelGene_386	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2358_CONTIG_1	12	+	1850	1	genic_intron	novelGene_136	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	4	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2013_CONTIG_1	15	-	1948	1	genic_intron	novelGene_425	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7650_CONTIG_1	MT	+	539	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1020	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7358_CONTIG_1	1	-	1940	1	genic_intron	novelGene_904	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8429_CONTIG_1	14	-	2008	1	novel_in_catalog	DNAAF2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	4	NA	FALSE	NA	NA	NA	A	coding	187	561	185	745	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3463_CONTIG_1	9	+	1524	1	novel_in_catalog	C9orf3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_531_CONTIG_1	X	-	2780	1	novel_in_catalog	WNK3	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5952_CONTIG_1	7	+	1064	1	incomplete-splice_match	SUN1	ENST00000497943	2824	3	1727	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2443_CONTIG_1	17	-	1730	1	antisense	novelGene_TAF15_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4371_CONTIG_1	MT	+	1135	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	1	5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4870_CONTIG_1	6	+	915	1	genic_intron	novelGene_854	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7526_CONTIG_1	3	-	869	1	incomplete-splice_match	CLDN1	ENST00000295522	3481	4	2119	494	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4186_CONTIG_1	1	-	372	1	incomplete-splice_match	NUAK2	ENST00000367157	3405	7	2898	136	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_573_CONTIG_1	10	+	369	1	genic_intron	novelGene_138	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8649_CONTIG_1	10	-	1469	1	incomplete-splice_match	MRPS16	ENST00000479005	2580	3	1049	63	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2684_CONTIG_1	13	-	1087	1	genic_intron	novelGene_622	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8465_CONTIG_1	MT	-	1543	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5461_CONTIG_1	X	-	1122	1	incomplete-splice_match	ELK1	ENST00000247161	2695	6	1517	57	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7491_CONTIG_1	4	-	1796	1	incomplete-splice_match	SCARB2	ENST00000264896	4763	12	2954	14	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7516_CONTIG_1	14	-	350	1	genic_intron	novelGene_545	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4333_CONTIG_1	MT	+	701	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	858	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8680_CONTIG_1	17	-	2125	1	antisense	novelGene_YPEL2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2455_CONTIG_1	7	+	1598	1	genic_intron	novelGene_466	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8416_CONTIG_1	GL000220.1	+	396	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	1026	447	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_240_CONTIG_1	MT	+	770	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	789	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6906_CONTIG_1	3	-	452	1	genic_intron	novelGene_743	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1013_CONTIG_1	5	+	904	1	incomplete-splice_match	SFXN1	ENST00000321442	4231	11	1704	1624	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8672_CONTIG_1	20	+	925	1	genic_intron	novelGene_27	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3914_CONTIG_1	1	+	1766	1	novel_in_catalog	GALNT2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3708_CONTIG_1	3	+	1712	1	incomplete-splice_match	KAT2B	ENST00000263754	4833	18	3091	31	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7502_CONTIG_1	10	-	1548	1	genic	PDZD8	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6253_CONTIG_1	3	-	1349	1	novel_in_catalog	TOMM70A	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_3228_CONTIG_1	8	+	1375	1	genic_intron	novelGene_739	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7600_CONTIG_1	16	+	1980	1	antisense	novelGene_NUDT21_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8610_CONTIG_1	MT	+	1225	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	75	78	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1418_CONTIG_1	3	-	576	1	genic_intron	novelGene_263	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5443_CONTIG_1	MT	-	955	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4424_CONTIG_1	16	+	930	1	genic_intron	novelGene_347	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8666_CONTIG_1	MT	+	1500	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	59	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1266_CONTIG_1	10	+	1068	1	antisense	novelGene_RP11-499P20.2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1308_CONTIG_1	4	-	1381	1	incomplete-splice_match	UBE2D3	ENST00000394803	2227	8	834	13	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3882_CONTIG_1	MT	+	1561	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-2	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7130_CONTIG_1	11	-	995	1	genic_intron	novelGene_699	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5933_CONTIG_1	3	-	792	1	incomplete-splice_match	CPN2	ENST00000323830	3028	2	2155	82	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2243_CONTIG_1	MT	+	1124	1	full-splice_match	MT-CYB	ENST00000361789	1141	1	0	17	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3735_CONTIG_1	1	-	858	1	full-splice_match	RPL7P9	ENST00000468715	747	1	-20	-91	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4894_CONTIG_1	MT	+	1525	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	34	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6736_CONTIG_1	3	+	801	1	incomplete-splice_match	FLNB	ENST00000477629	2058	2	1254	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	85	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8257_CONTIG_1	MT	+	919	1	full-splice_match	MT-ND1	ENST00000361390	956	1	-2	39	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3698_CONTIG_1	7	-	1218	1	genic_intron	novelGene_686	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2015_CONTIG_1	7	-	782	1	genic_intron	novelGene_803	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6462_CONTIG_1	5	-	705	1	incomplete-splice_match	SEPP1	ENST00000514985	2243	5	1393	146	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7978_CONTIG_1	MT	+	1555	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	4	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_874_CONTIG_1	11	+	1387	1	genic_intron	novelGene_57	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	60	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1321_CONTIG_1	15	+	1747	1	genic_intron	novelGene_422	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1207_CONTIG_1	22	-	1526	1	genic_intron	novelGene_191	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_3554_CONTIG_1	5	+	1133	1	incomplete-splice_match	CDC42SE2	ENST00000395246	3485	5	1098	1255	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6308_CONTIG_1	4	+	385	1	genic_intron	novelGene_518	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7308_CONTIG_1	7	-	1217	1	genic_intron	novelGene_113	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2234_CONTIG_1	GL000220.1	+	548	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	870	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_571_CONTIG_1	5	+	802	1	genic_intron	novelGene_271	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2447_CONTIG_1	13	+	552	1	incomplete-splice_match	MBNL2	ENST00000397601	4487	7	3840	96	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1912_CONTIG_1	17	+	1118	1	full-splice_match	NDEL1	ENST00000578172	3927	1	2712	97	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_456_CONTIG_1	7	-	860	1	genic_intron	novelGene_154	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7460_CONTIG_1	5	+	1211	1	genic	MAT2B	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1766_CONTIG_1	17	+	962	1	novel_in_catalog	MSI2	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	coding	137	411	487	897	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7735_CONTIG_1	10	-	361	1	genic_intron	novelGene_726	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3296_CONTIG_1	MT	-	439	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4698_CONTIG_1	18	+	579	1	genic_intron	novelGene_196	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8033_CONTIG_1	19	-	489	1	incomplete-splice_match	CACTIN	ENST00000429344	3612	10	3113	11	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_693_CONTIG_1	10	+	1280	1	intergenic	novelGene_202	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6357_CONTIG_1	17	-	623	1	antisense	novelGene_AC025627.7_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7076_CONTIG_1	2	+	669	1	incomplete-splice_match	PLEKHA3	ENST00000234453	13880	8	5144	8068	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2711_CONTIG_1	11	-	1229	1	incomplete-splice_match	NUP98	ENST00000359171	6770	34	5517	25	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2255_CONTIG_1	GL000220.1	+	452	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	705	712	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5248_CONTIG_1	MT	-	946	1	antisense	novelGene_MT-ND1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5362_CONTIG_1	11	-	1874	1	antisense	novelGene_MS4A4A_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_639_CONTIG_1	GL000220.1	+	1207	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	328	334	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5906_CONTIG_1	MT	+	705	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-21	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3547_CONTIG_1	10	-	2036	1	antisense	novelGene_CYP2C9_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1882_CONTIG_1	3	+	444	1	novel_in_catalog	PPARG	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8494_CONTIG_1	14	-	479	1	incomplete-splice_match	SERPINA1	ENST00000440909	3144	5	2175	491	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	104	312	129	440	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5593_CONTIG_1	14	-	785	1	genic_intron	novelGene_670	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2870_CONTIG_1	12	-	826	1	novel_in_catalog	RND1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4979_CONTIG_1	15	+	2151	1	genic_intron	novelGene_434	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6122_CONTIG_1	20	+	1642	1	novel_in_catalog	LBP	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	151	453	282	734	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_735_CONTIG_1	MT	+	705	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-21	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4077_CONTIG_1	5	+	748	1	genic_intron	novelGene_872	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7643_CONTIG_1	X	-	1722	1	incomplete-splice_match	MID1	ENST00000380787	5973	10	4249	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6649_CONTIG_1	16	+	678	1	incomplete-splice_match	HP	ENST00000570083	1270	5	592	1	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	144	432	79	510	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5343_CONTIG_1	5	+	319	1	genic_intron	novelGene_266	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3348_CONTIG_1	GL000220.1	-	320	1	antisense	novelGene_RNA28S5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4177_CONTIG_1	10	-	498	1	incomplete-splice_match	ZCCHC24	ENST00000372336	4933	4	1132	3304	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_186_CONTIG_1	MT	+	465	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	1094	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4746_CONTIG_1	4	-	1084	1	genic_intron	novelGene_814	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5359_CONTIG_1	GL000220.1	+	567	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	851	451	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5813_CONTIG_1	15	-	1825	1	antisense	novelGene_ABHD2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1787_CONTIG_1	3	-	2102	1	full-splice_match	CYP8B1	ENST00000316161	3950	1	265	1583	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	501	1503	61	1563	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_262_CONTIG_1	5	-	2295	1	full-splice_match	TAF7	ENST00000313368	2274	1	-21	0	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8452_CONTIG_1	MT	+	315	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	1103	141	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6482_CONTIG_1	MT	+	564	1	full-splice_match	MT-ND1	ENST00000361390	956	1	389	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5825_CONTIG_1	9	+	1111	1	genic_intron	novelGene_705	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7172_CONTIG_1	3	+	1366	1	genic_intron	novelGene_886	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6805_CONTIG_1	4	+	190	1	incomplete-splice_match	ALB	ENST00000486939	345	2	85	71	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5278_CONTIG_1	MT	+	1429	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	130	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1807_CONTIG_1	MT	+	1536	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7109_CONTIG_1	6	-	417	1	incomplete-splice_match	TRIM26	ENST00000480999	3114	3	2695	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8211_CONTIG_1	GL000220.1	+	549	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	503	817	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6862_CONTIG_1	1	-	1953	1	genic_intron	novelGene_286	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_920_CONTIG_1	4	-	388	1	genic_intron	novelGene_163	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5716_CONTIG_1	19	-	1271	1	incomplete-splice_match	LRG1	ENST00000306390	3036	2	1065	701	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	84	252	187	438	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_93_CONTIG_1	9	+	1841	1	novel_in_catalog	ORM1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2267_CONTIG_1	9	+	1492	1	incomplete-splice_match	PALM2	ENST00000374531	4492	7	853	2148	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	coding	100	300	59	358	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4212_CONTIG_1	11	+	1099	1	incomplete-splice_match	TSKU	ENST00000333090	2712	2	1604	10	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6730_CONTIG_1	MT	-	283	1	antisense	novelGene_MT-CO1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8305_CONTIG_1	19	+	379	1	incomplete-splice_match	GRWD1	ENST00000253237	5571	7	2009	3184	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4489_CONTIG_1	16	+	629	1	antisense	novelGene_CARHSP1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1639_CONTIG_1	10	-	570	1	genic_intron	novelGene_77	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_6317_CONTIG_1	12	-	413	1	genic_intron	novelGene_697	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3116_CONTIG_1	14	+	1241	1	genic_intron	novelGene_216	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6782_CONTIG_1	11	+	1097	1	genic_intron	novelGene_490	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4883_CONTIG_1	18	+	697	1	genic_intron	novelGene_79	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3944_CONTIG_1	GL000218.1	-	1012	1	genic_intron	novelGene_1	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5336_CONTIG_1	3	-	511	1	antisense	novelGene_SKIL_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5670_CONTIG_1	15	+	1636	1	novel_in_catalog	ZFAND6	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6773_CONTIG_1	15	-	1052	1	genic_intron	novelGene_264	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	70	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6256_CONTIG_1	8	-	1945	1	genic_intron	novelGene_735	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1356_CONTIG_1	14	+	813	1	genic_intron	novelGene_396	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5287_CONTIG_1	1	-	622	1	genic_intron	novelGene_906	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4422_CONTIG_1	2	-	1401	1	antisense	novelGene_EPCAM_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8435_CONTIG_1	10	-	1245	1	incomplete-splice_match	C10orf10	ENST00000298295	2120	2	652	224	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_747_CONTIG_1	MT	+	788	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	771	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3658_CONTIG_1	MT	-	362	1	antisense	novelGene_MT-CYB_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4239_CONTIG_1	14	+	562	1	genic_intron	novelGene_531	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2833_CONTIG_1	13	+	650	1	genic_intron	novelGene_641	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5606_CONTIG_1	7	-	566	1	genic_intron	novelGene_665	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5760_CONTIG_1	20	-	1157	1	genic_intron	novelGene_242	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_483_CONTIG_1	6	-	1810	1	novel_in_catalog	DST	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	90	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_718_CONTIG_1	6	-	963	1	incomplete-splice_match	MAN1A1	ENST00000368468	5014	13	3009	1043	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3724_CONTIG_1	3	-	1273	1	genic_intron	novelGene_299	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7027_CONTIG_1	9	+	1645	1	genic_intron	novelGene_521	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3301_CONTIG_1	MT	+	1359	1	full-splice_match	MT-ND4	ENST00000361381	1378	1	-289	308	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5474_CONTIG_1	17	-	1027	1	incomplete-splice_match	ACOX1	ENST00000293217	7514	14	2413	4075	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_808_CONTIG_1	20	-	911	1	genic_intron	novelGene_261	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3570_CONTIG_1	10	+	1045	1	genic_intron	novelGene_224	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4846_CONTIG_1	MT	+	1550	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	9	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_910_CONTIG_1	4	-	819	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1407	23	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	coding	150	450	156	605	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1859_CONTIG_1	3	+	847	1	incomplete-splice_match	SNRK	ENST00000429705	5128	6	4276	6	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1684_CONTIG_1	12	+	1160	1	incomplete-splice_match	C1S	ENST00000443875	2550	11	1388	3	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	coding	204	612	169	780	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3926_CONTIG_1	9	-	1961	1	genic_intron	novelGene_752	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2165_CONTIG_1	19	+	909	1	genic_intron	novelGene_354	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_96_CONTIG_1	X	+	266	1	genic_intron	novelGene_209	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5612_CONTIG_1	1	+	1267	1	genic_intron	novelGene_896	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	3	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5384_CONTIG_1	GL000220.1	+	296	1	full-splice_match	RNA18S5	ENST00000606783	1869	1	227	1346	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3027_CONTIG_1	3	+	619	1	genic_intron	novelGene_353	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5049_CONTIG_1	12	-	898	1	incomplete-splice_match	KDM5A	ENST00000399788	10763	28	9401	465	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1036_CONTIG_1	MT	-	1666	1	antisense	novelGene_MT-ND4_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5283_CONTIG_1	16	+	1443	1	genic_intron	novelGene_566	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6347_CONTIG_1	14	+	1079	1	genic_intron	novelGene_483	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1026_CONTIG_1	MT	+	1092	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	436	31	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1855_CONTIG_1	19	+	678	1	antisense	novelGene_EEF2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5454_CONTIG_1	15	-	2190	1	antisense	novelGene_SNX1_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3737_CONTIG_1	4	-	296	1	incomplete-splice_match	FGA	ENST00000403106	2248	5	1629	324	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2138_CONTIG_1	6	+	578	1	antisense	novelGene_LPA_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_813_CONTIG_1	15	+	1697	1	antisense	novelGene_RP11-272D12.2_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	75	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3286_CONTIG_1	13	+	657	1	incomplete-splice_match	NDFIP2	ENST00000218652	4625	8	1674	2295	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2802_CONTIG_1	3	+	1064	1	incomplete-splice_match	MAP3K13	ENST00000448876	1681	3	580	38	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	45	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_6249_CONTIG_1	11	+	1053	1	full-splice_match	NEAT1	ENST00000601801	1457	1	-17	421	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3871_CONTIG_1	16	+	309	1	incomplete-splice_match	HP	ENST00000565574	1187	5	311	568	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	79	237	71	307	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3384_CONTIG_1	6	-	520	1	genic_intron	novelGene_762	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2529_CONTIG_1	6	+	1164	1	genic_intron	novelGene_8	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_8179_CONTIG_1	5	-	1374	1	genic_intron	novelGene_863	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	80	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7295_CONTIG_1	11	-	639	1	genic_intron	novelGene_526	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4459_CONTIG_1	X	+	1474	1	intergenic	novelGene_185	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	10	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3385_CONTIG_1	5	+	1367	1	novel_in_catalog	GPBP1	novel	NA	NA	NA	NA	mono-exon_by_intron_retention/s	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7439_CONTIG_1	8	+	1225	1	antisense	novelGene_UBR5_AS	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	20	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_5245_CONTIG_1	MT	+	1564	1	full-splice_match	MT-RNR2	ENST00000387347	1559	1	0	-5	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_629_CONTIG_1	2	+	414	1	full-splice_match	RHOB	ENST00000272233	2366	1	1749	203	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1794_CONTIG_1	2	+	855	1	incomplete-splice_match	RIF1	ENST00000243326	15003	35	9306	4843	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1443_CONTIG_1	11	-	967	1	genic_intron	novelGene_35	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3672_CONTIG_1	6	+	881	1	incomplete-splice_match	HMGA1	ENST00000347617	1773	5	777	116	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	5	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1589_CONTIG_1	2	-	1977	1	incomplete-splice_match	FAM126B	ENST00000286181	4778	14	2143	659	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	2	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2395_CONTIG_1	3	+	424	1	genic_intron	novelGene_83	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3439_CONTIG_1	3	+	2476	1	genic_intron	novelGene_825	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4195_CONTIG_1	15	-	529	1	intergenic	novelGene_382	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	B	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7433_CONTIG_1	11	+	1046	1	genic_intron	novelGene_87	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	50	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_489_CONTIG_1	MT	+	705	1	full-splice_match	MT-CO2	ENST00000361739	684	1	0	-21	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	35	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4707_CONTIG_1	11	+	653	1	full-splice_match	MALAT1	ENST00000544868	4585	1	0	3932	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	non_coding	NA	NA	NA	NA	55	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_7074_CONTIG_1	X	+	907	1	intergenic	novelGene_767	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	5	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	65	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1177_CONTIG_1	3	-	1938	1	genic_intron	novelGene_868	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_1372_CONTIG_1	2	-	753	1	genic_intron	novelGene_926	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	25	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_3337_CONTIG_1	19	-	481	1	genic_intron	novelGene_365	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	100	NA	NA	1exon	TRUE	Artifact
SAMPLE_1_MOLECULE_5646_CONTIG_1	14	-	331	1	incomplete-splice_match	SERPINA1	ENST00000556091	643	2	284	29	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	60	180	150	329	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_950_CONTIG_1	14	-	439	1	genic_intron	novelGene_505	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	1	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	30	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_4586_CONTIG_1	12	-	949	1	incomplete-splice_match	APOF	ENST00000541105	1682	2	658	76	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	C	coding	100	300	100	399	15	NA	NA	1exon	FALSE	Isoform
SAMPLE_1_MOLECULE_2228_CONTIG_1	16	+	897	1	genic_intron	novelGene_485	novel	NA	NA	NA	NA	mono-exon	FALSE	canonical	NA	NA	NA	NA	NA	0	NA	FALSE	NA	NA	NA	A	non_coding	NA	NA	NA	NA	40	NA	NA	1exon	FALSE	Isoform
